Clone MIP16540 Report

Search the DGRC for MIP16540

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:165
Well:40
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptSend2-RA
Protein status:MIP16540.pep: gold
Sequenced Size:794

Clone Sequence Records

MIP16540.complete Sequence

794 bp assembled on 2010-01-28

GenBank Submission: BT120281.1

> MIP16540.complete
ACTGCAATTCAAAGTATCATACAAACTGGTCAAGATGTTCATCCAAAGCT
TCCTGTTGCTATTGGCGCTCAATTCCCTGTCCGCAGGACCAGTAATCCGG
CCGGAAGAACGCATTATCGGTGGACAACCCATTGGAATCGAGGAGGCACC
ATGGCAGGTGTCCATACAACGTGATGGCAAACATTTATGCGGTGGCTCCA
TTTACAGCGCAGATATCATCATTACTGCGGCCCATTGCGTCCAGGGCCAG
GGATATCAAGTTCGGGCAGGATCCGCCTTGAAGAACTCCAATGGAAGTGT
TGTCGATGTGGCCGCTATAAGGACGCATGAGGGATTAGGAAACGACATCG
CCATCGTGCGGCTAAGTAAGCCACTTGAGTTCACAAACCAAGTTCAGCCC
ATTCCATTGGCCAAGACAAATCCCCCGCCTGGATCGATTGCCTTCGTCTC
TGGCTGGGGAAGTTCTTCTTATTACTCACATCCCATCGATCTTCAAGGAG
TAAACCTTTACATTCAATGGCCGTACTATTGTGGATTAACTGAACCGTCA
AGAATATGCGCCGGATCTTTTGGAAGGGCGGCTTGTAAAGGAGACTCTGG
TGGACCGTTGGTGTTTGACCAACAACTTGTGGGTGTTGTATCCGGGGGTA
CAAAGGATTGCACGTATAGTTCAATCTACACTAGTGTCCCATATTTCCGT
GAATGGATCTTAAATGCTATCGATGAAATAATGTCAGCGAATCGAAACAA
ATAAATATTTACAATTGCACAACTAAAAAAAAAAAAAAAAAAAA

MIP16540.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG18125-RA 720 CG18125-RA 1..720 35..754 3600 100 Plus
CG17234-RA 756 CG17234-RA 1..203 35..237 445 81.2 Plus
CG17234-RA 756 CG17234-RA 345..465 340..460 365 86.7 Plus
CG17234-RA 756 CG17234-RA 237..310 247..320 205 85.1 Plus
CG17234-RA 756 CG17234-RA 575..669 555..649 205 81 Plus
CG17234-RA 756 CG17234-RA 703..740 683..720 160 94.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:02:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 14344715..14345488 774..1 3870 100 Minus
chr2L 23010047 chr2L 2252778..2253014 1..237 510 81 Plus
chr2L 23010047 chr2L 2253156..2253276 340..460 365 86.8 Plus
chr2L 23010047 chr2L 2253386..2253551 555..720 305 78.9 Plus
chr2L 23010047 chr2L 2253048..2253121 247..320 205 85.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:20:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14345913..14346688 776..1 3880 100 Minus
2L 23513712 2L 2253045..2253281 1..237 510 81 Plus
2L 23513712 2L 2253423..2253543 340..460 365 86.8 Plus
2L 23513712 2L 2253653..2253818 555..720 305 78.9 Plus
2L 23513712 2L 2253315..2253388 247..320 205 85.1 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 14345913..14346688 776..1 3880 100 Minus
2L 23513712 2L 2253045..2253281 1..237 510 81 Plus
2L 23513712 2L 2253423..2253543 340..460 365 86.7 Plus
2L 23513712 2L 2253315..2253388 247..320 205 85.1 Plus
2L 23513712 2L 2253653..2253747 555..649 205 81 Plus
2L 23513712 2L 2253781..2253818 683..720 160 94.7 Plus
Blast to na_te.dros performed on 2019-03-16 08:02:50 has no hits.

MIP16540.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:03:53 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 14344715..14345488 1..774 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 18:43:50 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
CG18125-RA 1..720 35..754 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:14:41 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
CG18125-RA 1..720 35..754 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 08:41:29 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
Send2-RA 1..720 35..754 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:33:53 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
Send2-RA 1..720 35..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 18:43:48 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
CG18125-RA 1..720 35..754 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:14:41 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
CG18125-RA 1..720 35..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:41:29 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
Send2-RA 1..774 1..774 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:33:53 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
Send2-RA 1..774 1..774 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:53 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14345915..14346688 1..774 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:53 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14345915..14346688 1..774 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:53 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14345915..14346688 1..774 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:41:29 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 14345915..14346688 1..774 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:04:58 Download gff for MIP16540.complete
Subject Subject Range Query Range Percent Splice Strand
2L 14345915..14346688 1..774 100   Minus

MIP16540.hyp Sequence

Translation from 0 to 753

> MIP16540.hyp
LQFKVSYKLVKMFIQSFLLLLALNSLSAGPVIRPEERIIGGQPIGIEEAP
WQVSIQRDGKHLCGGSIYSADIIITAAHCVQGQGYQVRAGSALKNSNGSV
VDVAAIRTHEGLGNDIAIVRLSKPLEFTNQVQPIPLAKTNPPPGSIAFVS
GWGSSSYYSHPIDLQGVNLYIQWPYYCGLTEPSRICAGSFGRAACKGDSG
GPLVFDQQLVGVVSGGTKDCTYSSIYTSVPYFREWILNAIDEIMSANRNK
*

MIP16540.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Send2-PA 239 CG18125-PA 1..239 12..250 1258 100 Plus
CG17234-PA 251 CG17234-PA 1..250 12..243 747 62.8 Plus
Send1-PA 255 CG17012-PA 1..244 12..241 523 47.1 Plus
alphaTry-PA 256 CG18444-PA 1..256 9..243 432 41.6 Plus
CG30025-PA 253 CG30025-PA 4..251 17..238 425 40.2 Plus

MIP16540.pep Sequence

Translation from 1 to 753

> MIP16540.pep
LQFKVSYKLVKMFIQSFLLLLALNSLSAGPVIRPEERIIGGQPIGIEEAP
WQVSIQRDGKHLCGGSIYSADIIITAAHCVQGQGYQVRAGSALKNSNGSV
VDVAAIRTHEGLGNDIAIVRLSKPLEFTNQVQPIPLAKTNPPPGSIAFVS
GWGSSSYYSHPIDLQGVNLYIQWPYYCGLTEPSRICAGSFGRAACKGDSG
GPLVFDQQLVGVVSGGTKDCTYSSIYTSVPYFREWILNAIDEIMSANRNK
*

MIP16540.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19704-PA 251 GF19704-PA 22..251 36..243 468 45.2 Plus
Dana\GF15290-PA 247 GF15290-PA 2..247 17..243 463 43.5 Plus
Dana\GF12402-PA 256 GF12402-PA 30..256 37..243 406 41.9 Plus
Dana\GF12546-PA 256 GF12546-PA 4..256 17..243 404 41.3 Plus
Dana\GF12403-PA 256 GF12403-PA 4..256 17..243 398 42.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10155-PA 242 GG10155-PA 1..241 12..243 676 63.4 Plus
Dere\GG24537-PA 254 GG24537-PA 1..250 12..240 549 52.8 Plus
Dere\GG24539-PA 247 GG24539-PA 1..247 12..243 421 40 Plus
Dere\GG20381-PA 259 GG20381-PA 1..255 12..239 420 40.2 Plus
Dere\epsilonTry-PA 256 GG22660-PA 1..256 9..243 398 39.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22924-PA 256 GH22924-PA 4..256 17..243 409 39.5 Plus
Dgri\GH22926-PA 256 GH22926-PA 4..256 17..243 407 39.5 Plus
Dgri\GH22866-PA 255 GH22866-PA 4..255 17..243 403 39.5 Plus
Dgri\GH22928-PA 243 GH22928-PA 2..243 28..243 400 40.1 Plus
Dgri\GH13790-PA 261 GH13790-PA 1..249 12..237 398 45.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
Send2-PA 239 CG18125-PA 1..239 12..250 1258 100 Plus
CG17234-PA 251 CG17234-PA 1..250 12..243 747 62.8 Plus
Send1-PA 255 CG17012-PA 1..244 12..241 523 47.1 Plus
alphaTry-PA 256 CG18444-PA 1..256 9..243 432 41.6 Plus
CG30025-PA 253 CG30025-PA 4..251 17..238 425 40.2 Plus
betaTry-PB 253 CG18211-PB 4..251 17..238 422 41.1 Plus
betaTry-PA 253 CG18211-PA 4..251 17..238 422 41.1 Plus
gammaTry-PA 253 CG30028-PA 4..251 17..238 420 39.8 Plus
deltaTry-PA 253 CG12351-PA 4..251 17..238 420 39.8 Plus
CG30031-PA 253 CG30031-PA 4..251 17..238 420 39.8 Plus
Ser8-PA 260 CG4812-PA 1..256 10..239 413 39.7 Plus
epsilonTry-PA 256 CG18681-PA 9..256 16..243 401 39.9 Plus
Ser12-PA 245 CG17240-PA 1..245 12..243 394 39.9 Plus
CG17239-PB 248 CG17239-PB 1..244 12..243 386 39.5 Plus
CG17239-PA 248 CG17239-PA 1..244 12..243 386 39.5 Plus
iotaTry-PA 252 CG7754-PA 7..252 14..243 378 39.8 Plus
CG17571-PB 258 CG17571-PB 27..258 34..243 371 38.2 Plus
CG17571-PA 258 CG17571-PA 27..258 34..243 371 38.2 Plus
thetaTry-PA 262 CG12385-PA 8..262 18..243 347 36.1 Plus
CG31681-PA 264 CG31681-PA 5..249 18..236 324 38.9 Plus
CG13430-PB 267 CG13430-PB 12..267 18..244 315 34.8 Plus
CG13430-PA 267 CG13430-PA 12..267 18..244 315 34.8 Plus
CG11192-PB 279 CG11192-PB 1..264 12..241 313 34 Plus
CG1304-PA 260 CG1304-PA 8..258 12..241 311 34.6 Plus
Ser6-PA 259 CG2071-PA 1..253 5..236 310 34.1 Plus
CG17242-PA 245 CG17242-PA 1..236 12..240 307 35.5 Plus
CG17242-PB 245 CG17242-PB 1..236 12..240 307 35.5 Plus
CG32834-PB 556 CG32834-PB 6..264 17..247 304 34 Plus
lambdaTry-PA 272 CG12350-PA 9..268 19..248 295 34.5 Plus
CG31269-PB 273 CG31269-PB 7..262 18..247 295 35.1 Plus
CG8299-PA 260 CG8299-PA 28..252 38..236 292 37.6 Plus
zetaTry-PA 280 CG12387-PA 35..273 34..236 290 36.8 Plus
CG9676-PA 251 CG9676-PA 4..245 13..236 287 33.7 Plus
CG31954-PA 277 CG31954-PA 46..271 33..236 282 35.5 Plus
CG7829-PA 253 CG7829-PA 10..253 18..248 280 33.9 Plus
CG34458-PA 257 CG34458-PA 4..251 10..236 271 34.4 Plus
CG30288-PC 282 CG30288-PC 42..274 37..240 271 34.3 Plus
CG12951-PA 265 CG12951-PA 10..265 16..246 263 33 Plus
CG11836-PI 281 CG11836-PI 42..275 35..241 263 31.5 Plus
CG11836-PJ 333 CG11836-PJ 94..327 35..241 263 31.5 Plus
l(2)k05911-PC 639 CG31728-PC 383..638 21..240 262 33.3 Plus
CG16998-PA 258 CG16998-PA 8..253 18..247 261 31.9 Plus
CG30289-PA 316 CG30289-PA 42..273 38..238 261 34.2 Plus
sphe-PA 249 CG9675-PA 2..248 14..240 260 27.5 Plus
CG32270-PA 259 CG32270-PA 10..255 17..240 258 33.9 Plus
CG32523-PA 262 CG32523-PA 34..256 35..236 258 32.7 Plus
CG10405-PB 268 CG10405-PB 11..262 12..236 258 31.9 Plus
CG9673-PB 261 CG9673-PB 25..256 34..236 255 30.6 Plus
CG9673-PA 261 CG9673-PA 25..256 34..236 255 30.6 Plus
CG16749-PA 265 CG16749-PA 29..257 37..236 252 33.2 Plus
CG5246-PA 272 CG5246-PA 36..261 32..236 252 32.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21243-PA 255 GI21243-PA 7..255 18..243 436 43 Plus
Dmoj\GI18413-PA 256 GI18413-PA 4..256 17..243 405 42.1 Plus
Dmoj\GI21244-PA 256 GI21244-PA 4..256 17..243 402 41.7 Plus
Dmoj\GI18414-PA 256 GI18414-PA 4..256 17..243 399 41.7 Plus
Dmoj\GI20607-PA 261 GI20607-PA 33..256 35..238 395 42.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19408-PA 245 GL19408-PA 1..244 12..243 430 44.4 Plus
Dper\GL17339-PA 256 GL17339-PA 4..256 17..243 426 42.5 Plus
Dper\GL17338-PA 256 GL17338-PA 4..256 17..243 422 41.1 Plus
Dper\GL17142-PA 256 GL17142-PA 4..256 17..243 405 42.3 Plus
Dper\GL17143-PA 256 GL17143-PA 4..256 17..243 397 41.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14406-PA 245 GA14406-PA 1..244 12..243 446 45.2 Plus
Dpse\GA14937-PA 256 GA14937-PA 4..256 17..243 426 42.5 Plus
Dpse\GA15051-PA 256 GA15051-PA 4..256 17..243 423 41.5 Plus
Dpse\GA24979-PA 256 GA24979-PA 4..256 17..243 408 42.3 Plus
Dpse\GA24980-PA 256 GA24980-PA 4..256 17..243 396 41.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14874-PA 245 GM14874-PA 1..245 12..250 909 81.2 Plus
Dsec\GM18326-PA 251 GM18326-PA 1..250 12..243 603 60 Plus
Dsec\GM18245-PA 250 GM18245-PA 1..249 12..243 592 54.2 Plus
Dsec\GM18244-PA 255 GM18244-PA 1..246 12..243 562 49.4 Plus
Dsec\GM21468-PA 260 GM21468-PA 34..256 37..239 409 42.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22013-PA 245 GD22013-PA 1..245 12..250 909 81.2 Plus
Dsim\GD23142-PA 251 GD23142-PA 1..250 12..243 673 61.2 Plus
Dsim\GD22851-PA 250 GD22851-PA 1..249 12..243 598 54.6 Plus
Dsim\GD22850-PA 255 GD22850-PA 1..246 12..243 566 49.4 Plus
Dsim\GD22853-PA 245 GD22853-PA 1..245 12..243 418 41.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:58:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22325-PA 340 GJ22325-PA 1..251 12..243 470 43.4 Plus
Dvir\GJ21575-PA 256 GJ21575-PA 31..255 37..243 450 47.8 Plus
Dvir\GJ20754-PA 253 GJ20754-PA 7..250 17..243 416 41.8 Plus
Dvir\GJ21497-PA 309 GJ21497-PA 81..309 35..243 403 45.7 Plus
Dvir\GJ21573-PA 271 GJ21573-PA 1..262 12..245 397 40.8 Plus
Dvir\GJ21497-PA 309 GJ21497-PA 4..71 17..78 152 44.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21995-PA 256 GK21995-PA 4..256 17..243 427 42.5 Plus
Dwil\GK21994-PA 256 GK21994-PA 4..256 17..243 424 40.7 Plus
Dwil\GK19007-PA 261 GK19007-PA 1..257 12..239 414 40.7 Plus
Dwil\GK19675-PA 256 GK19675-PA 4..256 17..243 400 42.1 Plus
Dwil\GK19676-PA 244 GK19676-PA 18..244 37..243 395 45.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:58:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18073-PA 248 GE18073-PA 1..247 12..243 718 63.2 Plus
Dyak\GE25071-PA 249 GE25071-PA 1..249 12..243 699 63.9 Plus
Dyak\GE15153-PA 260 GE15153-PA 1..253 12..240 657 54.2 Plus
Dyak\GE15163-PA 259 GE15163-PA 1..253 12..241 649 58.1 Plus
Dyak\GE12542-PA 259 GE12542-PA 1..255 12..239 413 40.2 Plus