Clone MIP16620 Report

Search the DGRC for MIP16620

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:166
Well:20
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG14367-RA
Protein status:MIP16620.pep: Imported from assembly
Sequenced Size:1247

Clone Sequence Records

MIP16620.complete Sequence

1247 bp assembled on 2010-01-28

GenBank Submission: BT120240.1

> MIP16620.complete
GTGGAAGACTCCTGGGTTTTCGATTCGCTGGTGTGCTTCCTGCACGGGCC
CATTTGGAATGCTCCGCTTCAGACGTTCATAGAGCAAAAGTCCTTAGTCT
TCGATCCCAACCAGCAGTTGGATGAGAACAATCCGGACATACTGCAGATA
CACGAGGAATACAAGAATCTGGTGGACTACATGCTCGGCAGCTTCATGGA
GGAGATGCAGATATCACCGGAGCAGTTCGAAATGGCCTGTCTGGAGGGTA
GGCAGCAGGGTCAGGGCGAGAATCCCTTTCATTTCCACCAGGTGCTTTTC
CAGCAGATATGGGCCGCCAACGATCTGAAGATATTCATACGGATGATGAC
GCAACGCAACGTGGAGCTTCAGCTGCAGGCCCTGGATCTCATAGAGAAAA
ATCAATTAGCCCCTGGTGGCGTCGAGGAGGGGGATGACCGCAGTGCGGAC
GCTAGCTCGGATCCAGGGGATACCGCCTCCGAGGTGGAACAAATGATAGC
CAAGACGGTGTCTGACGAACTGGAGAGCCCCGAAGCGGCCCTAACTCCAG
AGCAGGAGCCCAATCTGGAGCTGGTTAACGACAAGTTCCAGCGCCTGAAT
CTGTTCTTCGAGCAGGAGGATCGTGTGGACCCCAGTGATGTTGTCTCGCG
GCAGGAGTACCTGCGCCAACAGCGTGACAAGATTGTGGAGATAAAGAAGC
AGACGCGTGCAAAGCAACTGCAAGAGACCATGTCCCGCGGTACTCCACAT
GCACCGGAAGGAGCACGTCCCAGCTCCGCGTTGGTGGCCCAACAGCTGCT
CGAGAATGGCGGCCAGACTAAGGAGCTCTCCATGCCGGCACCACTAGAAG
CTGAGGAGAACGCTGCCCTGCAGCTCAGACGCAATCTTGCCAAGCGCTTG
CGCAGCGAAGTGGTTGAGCAGAAGTGAAAGAAAGGACGCACTTTTTTCCC
TACTATTCCCATTTATTGCAGATACTCAGCCAGGATTAACAACGTGCATT
AGGTATTGTGGCATGCAGACTAGTTTGGTTGGTTGATGCACGGTGTGTGT
CGTATGTTGTACTTGTAACGCCACCCCTCATCCATGTCCACAAACAGCCA
ATCCATAGATTGATTGTTTGTGGGCATGGTCGAGCGGATCTATCAATTTC
CATTACGCTATTCCTCAAAATAAACATATTGCTAGTGAAGTGTTTCTCAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP16620.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14367-RA 1463 CG14367-RA 17..1220 1..1204 6020 100 Plus
f-cup-RE 2294 f-cup-RE 2032..2294 1204..942 1315 100 Minus
f-cup.b 2449 f-cup.b 2187..2449 1204..942 1315 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9519675..9520406 467..1198 3615 99.6 Plus
chr3R 27901430 chr3R 9519101..9519316 96..311 1065 99.5 Plus
chr3R 27901430 chr3R 9519364..9519528 304..468 825 100 Plus
chr3R 27901430 chr3R 9518952..9519048 1..97 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:20:16 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13694782..13695519 467..1204 3690 100 Plus
3R 32079331 3R 13694208..13694423 96..311 1065 99.5 Plus
3R 32079331 3R 13694471..13694635 304..468 825 100 Plus
3R 32079331 3R 13694059..13694155 1..97 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13435613..13436350 467..1204 3690 100 Plus
3R 31820162 3R 13435039..13435254 96..311 1065 99.5 Plus
3R 31820162 3R 13435302..13435466 304..468 825 100 Plus
3R 31820162 3R 13434890..13434986 1..97 485 100 Plus
Blast to na_te.dros performed 2019-03-16 21:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dbuz\Osvaldo 9045 Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). 1923..1998 163..237 116 63.2 Plus

MIP16620.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:11 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9518952..9519048 1..97 100 -> Plus
chr3R 9519103..9519311 98..306 100 -> Plus
chr3R 9519367..9519527 307..467 100 -> Plus
chr3R 9519676..9520406 468..1198 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 09:39:32 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..933 1..927 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:13:17 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..933 1..927 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:04:06 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..933 1..927 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:57 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..933 1..927 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 09:39:31 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..1204 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:13:17 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..1204 1..1198 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:06 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..1204 1..1198 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:57 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
CG14367-RA 7..1204 1..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:11 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13694059..13694155 1..97 100 -> Plus
3R 13694210..13694418 98..306 100 -> Plus
3R 13694474..13694634 307..467 100 -> Plus
3R 13694783..13695513 468..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:11 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13694059..13694155 1..97 100 -> Plus
3R 13694210..13694418 98..306 100 -> Plus
3R 13694474..13694634 307..467 100 -> Plus
3R 13694783..13695513 468..1198 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:11 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13694059..13694155 1..97 100 -> Plus
3R 13694210..13694418 98..306 100 -> Plus
3R 13694474..13694634 307..467 100 -> Plus
3R 13694783..13695513 468..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:06 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9519781..9519877 1..97 100 -> Plus
arm_3R 9519932..9520140 98..306 100 -> Plus
arm_3R 9520196..9520356 307..467 100 -> Plus
arm_3R 9520505..9521235 468..1198 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:03:58 Download gff for MIP16620.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13435041..13435249 98..306 100 -> Plus
3R 13435305..13435465 307..467 100 -> Plus
3R 13435614..13436344 468..1198 100   Plus
3R 13434890..13434986 1..97 100 -> Plus

MIP16620.pep Sequence

Translation from 0 to 926

> MIP16620.pep
VEDSWVFDSLVCFLHGPIWNAPLQTFIEQKSLVFDPNQQLDENNPDILQI
HEEYKNLVDYMLGSFMEEMQISPEQFEMACLEGRQQGQGENPFHFHQVLF
QQIWAANDLKIFIRMMTQRNVELQLQALDLIEKNQLAPGGVEEGDDRSAD
ASSDPGDTASEVEQMIAKTVSDELESPEAALTPEQEPNLELVNDKFQRLN
LFFEQEDRVDPSDVVSRQEYLRQQRDKIVEIKKQTRAKQLQETMSRGTPH
APEGARPSSALVAQQLLENGGQTKELSMPAPLEAEENAALQLRRNLAKRL
RSEVVEQK*

MIP16620.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:52:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16874-PA 311 GF16874-PA 3..311 1..308 1459 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19784-PA 310 GG19784-PA 3..310 1..308 1580 97.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:52:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14265-PA 304 GH14265-PA 4..303 2..307 1238 79.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG14367-PA 310 CG14367-PA 3..310 1..308 1578 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:52:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23157-PA 311 GI23157-PA 4..310 2..307 1177 76.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23082-PA 307 GL23082-PA 3..305 1..306 1360 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12937-PA 307 GA12937-PA 3..305 1..306 1360 84.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24123-PA 308 GM24123-PA 3..308 1..308 1588 98.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18921-PA 240 GD18921-PA 3..235 1..233 1205 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14470-PA 311 GJ14470-PA 4..310 2..307 1189 77.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:52:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14192-PA 310 GK14192-PA 3..309 1..307 1308 82.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26289-PA 310 GE26289-PA 3..310 1..308 1577 97.4 Plus

MIP16620.hyp Sequence

Translation from 0 to 926

> MIP16620.hyp
VEDSWVFDSLVCFLHGPIWNAPLQTFIEQKSLVFDPNQQLDENNPDILQI
HEEYKNLVDYMLGSFMEEMQISPEQFEMACLEGRQQGQGENPFHFHQVLF
QQIWAANDLKIFIRMMTQRNVELQLQALDLIEKNQLAPGGVEEGDDRSAD
ASSDPGDTASEVEQMIAKTVSDELESPEAALTPEQEPNLELVNDKFQRLN
LFFEQEDRVDPSDVVSRQEYLRQQRDKIVEIKKQTRAKQLQETMSRGTPH
APEGARPSSALVAQQLLENGGQTKELSMPAPLEAEENAALQLRRNLAKRL
RSEVVEQK*

MIP16620.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG14367-PA 310 CG14367-PA 3..310 1..308 1578 100 Plus