Clone MIP16783 Report

Search the DGRC for MIP16783

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:167
Well:83
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptSfp84E-RA
Protein status:MIP16783.pep: gold
Sequenced Size:584

Clone Sequence Records

MIP16783.complete Sequence

584 bp assembled on 2010-01-27

GenBank Submission: BT120234.1

> MIP16783.complete
CGATTAAGATGCGTCACTTTACCGTGCTAGTATCCTGCATCCTGATAGTT
ATATTGCCATGCGTGTTAGGGGCTCACAGGACAGCTCTCAAGAGTCATTA
TAGAAGCTTTGTGAAACCAAAGCAGAATGTCATACGGGCTAGAACCAATC
AAACAACACAACTTACATTAGGAGACTATACGGAAAACTTTTATAAACAC
TGCATGGATATTTTCAAAGAGAAAAACTTGGTTGGTAAAGTGATCCATGG
CATGATCAGTGGAATTTTAGACAGGCTCAATGAAGTGTGCCTCGACAAGC
CCATTCACCCACTTATCCACAAAGTTTTCACGGAAATCCTTCTCTGTGGC
GGAAGCATGTCGGATGCAATCGATAGCGTCATTGACATATTATTTGGAAA
TTTGGAAAGAAATTGCAGGGAGAGGCCTGGATTCAATAGCTATTATATTT
TAACCAGTGCGGAAAACGAAATAGTTGAATCAAAAGGTTAAACAACAATC
TGAGAGCTTATATATTGATGTAACCAAAATAAAATAATTAGGGGTAGCAC
TAATACCTCTTATAAGACAAAAAAAAAAAAAAAA

MIP16783.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:39:56
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-RA 722 Sfp84E-RA 59..628 1..570 2850 100 Plus
Os-C.b 911 Os-C.b 769..911 570..428 715 100 Minus
Os-C-RC 956 Os-C-RC 814..956 570..428 715 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3805731..3806288 568..11 2775 99.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:20:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7979682..7980241 570..11 2800 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7720513..7721072 570..11 2800 100 Minus
Blast to na_te.dros performed 2019-03-15 15:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rt1b 5171 Rt1b RT1B 5150bp 3972..4068 65..161 125 58.8 Plus

MIP16783.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:06:57 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3805731..3806291 4..568 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-27 19:48:38 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 1..483 9..491 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:13:06 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 1..483 9..491 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:02:42 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 1..483 9..491 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:08 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 1..483 9..491 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-27 19:48:38 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 22..589 1..568 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:13:06 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 22..589 1..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:02:42 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 22..589 1..568 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:08 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
Sfp84E-RA 22..589 1..568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:57 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7979684..7980244 4..568 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:57 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7979684..7980244 4..568 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:06:57 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7979684..7980244 4..568 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:02:42 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3805406..3805966 4..568 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:03:50 Download gff for MIP16783.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7720515..7721075 4..568 99   Minus

MIP16783.pep Sequence

Translation from 2 to 490

> MIP16783.pep
IKMRHFTVLVSCILIVILPCVLGAHRTALKSHYRSFVKPKQNVIRARTNQ
TTQLTLGDYTENFYKHCMDIFKEKNLVGKVIHGMISGILDRLNEVCLDKP
IHPLIHKVFTEILLCGGSMSDAIDSVIDILFGNLERNCRERPGFNSYYIL
TSAENEIVESKG*

MIP16783.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-PA 160 CG42484-PA 1..160 3..162 838 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30261-PA 137 GA30261-PA 48..136 63..151 155 36 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11030-PA 153 GJ11030-PA 62..151 63..152 142 32.2 Plus

MIP16783.hyp Sequence

Translation from 203 to 490

> MIP16783.hyp
MDIFKEKNLVGKVIHGMISGILDRLNEVCLDKPIHPLIHKVFTEILLCGG
SMSDAIDSVIDILFGNLERNCRERPGFNSYYILTSAENEIVESKG*

MIP16783.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Sfp84E-PA 160 CG42484-PA 66..160 1..95 493 100 Plus