Clone MIP16821 Report

Search the DGRC for MIP16821

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:168
Well:21
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG14589-RA
Protein status:MIP16821.pep: gold
Sequenced Size:852

Clone Sequence Records

MIP16821.complete Sequence

852 bp assembled on 2011-03-15

GenBank Submission: BT126147.1

> MIP16821.complete
CCGTAATCTCAAGCAAACACAACAAAAACACGAGAATTTCAAGTACGGAA
AGCAACACATTAGAAGGACCAATGTGGAACGTATCCTCGATCCTGGAAGG
GCTAGAGCATGAGCAAGGAGTAAACGCGGACCTCCGCGGCAAGAACGTGT
TCAACTTGTGCGTGACCTTCTTGTGGATATTTCTGTGCATCTACGTCCTG
TCCAAGCTAACCCAACTCGTGGAGCTCTTTCTGTGCCAGCGGCTACTTGG
CCAGAAGCAATGGTACGACGTCCGCACGATCAAAAACGAGTGGGAGCAGA
CCCTCCAGCTTTATGAGGACGATAAAAGCCAGCTGGACGCACAGGTGCGC
GAGTTGCGAGAAAAGAACCTGAGTATGGAGCGCTTGATGGTGGACCTGCG
AGACTACAACATCCACTTGATCAGCGAAAACTATATGCTGTCCGTGATGC
ACGAACAGAAACCAAGGCCGGCCGAGCCGAACATCTACATCACCAACAGC
CACTTCCATCTCACTCGCCAGATGTTTCTGAACGATAGTCAAATCAATCT
GAACGTCCATGACCATGGCGAGAAAGGAGCTTCCGGGGAGGGCAAAAATG
TCTGGCTGCAGTATCTAAGGATGCGCAAGTGCTATATGAGCCCGATTGCC
GATCCGAATTCGATAGATCCCAGCAGCACCACCAAGCAGATTCTCCCAAT
TGTTATGAGCACCGAGCAGTTGGCCGAATTGCAAGGCATGATCTAGTTAG
TTTTAAGTTATATGCAAACATAAATCTCGATTGTTGTATTGATCGCAAAG
AAAAAAGCTCAAACAAATATATTTAAATTAAAAAAAAAAAAAAAAAAAAA
AA

MIP16821.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:29:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 2024451..2024908 1..458 2260 99.6 Plus
chr2R 21145070 chr2R 2025081..2025361 456..736 1405 100 Plus
chr2R 21145070 chr2R 2025411..2025506 734..829 480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:29:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6137356..6137813 1..458 2290 100 Plus
2R 25286936 2R 6137986..6138266 456..736 1405 100 Plus
2R 25286936 2R 6138316..6138413 734..831 490 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 6138555..6139012 1..458 2290 100 Plus
2R 25260384 2R 6139185..6139465 456..736 1405 100 Plus
2R 25260384 2R 6139515..6139612 734..831 490 100 Plus
Blast to na_te.dros performed on 2019-03-16 22:29:57 has no hits.

MIP16821.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:30:38 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 2024451..2024908 1..458 99 -> Plus
chr2R 2025084..2025360 459..735 100 -> Plus
chr2R 2025413..2025506 736..829 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-15 17:51:32 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14589-RA 1..675 72..746 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:22 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14589-RC 1..750 72..826 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:28:40 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14589-RC 1..750 72..826 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-15 17:51:32 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14589-RA 54..882 1..829 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:22 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14589-RA 54..882 1..829 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:40 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
CG14589-RA 54..882 1..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:38 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6137356..6137813 1..458 100 -> Plus
2R 6137989..6138265 459..735 100 -> Plus
2R 6138318..6138411 736..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:38 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6137356..6137813 1..458 100 -> Plus
2R 6137989..6138265 459..735 100 -> Plus
2R 6138318..6138411 736..829 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:38 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6137356..6137813 1..458 100 -> Plus
2R 6137989..6138265 459..735 100 -> Plus
2R 6138318..6138411 736..829 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:22 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2024861..2025318 1..458 100 -> Plus
arm_2R 2025494..2025770 459..735 100 -> Plus
arm_2R 2025823..2025916 736..829 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:58 Download gff for MIP16821.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6138555..6139012 1..458 100 -> Plus
2R 6139188..6139464 459..735 100 -> Plus
2R 6139517..6139610 736..829 100   Plus

MIP16821.hyp Sequence

Translation from 2 to 745

> MIP16821.hyp
VISSKHNKNTRISSTESNTLEGPMWNVSSILEGLEHEQGVNADLRGKNVF
NLCVTFLWIFLCIYVLSKLTQLVELFLCQRLLGQKQWYDVRTIKNEWEQT
LQLYEDDKSQLDAQVRELREKNLSMERLMVDLRDYNIHLISENYMLSVMH
EQKPRPAEPNIYITNSHFHLTRQMFLNDSQINLNVHDHGEKGASGEGKNV
WLQYLRMRKCYMSPIADPNSIDPSSTTKQILPIVMSTEQLAELQGMI*

MIP16821.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:08:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG14589-PA 224 CG14589-PA 1..224 24..247 1180 100 Plus
CG14589-PC 249 CG14589-PC 1..224 24..247 1164 98.2 Plus
CG14589-PB 186 CG14589-PB 1..186 24..247 940 83 Plus

MIP16821.pep Sequence

Translation from 2 to 745

> MIP16821.pep
VISSKHNKNTRISSTESNTLEGPMWNVSSILEGLEHEQGVNADLRGKNVF
NLCVTFLWIFLCIYVLSKLTQLVELFLCQRLLGQKQWYDVRTIKNEWEQT
LQLYEDDKSQLDAQVRELREKNLSMERLMVDLRDYNIHLISENYMLSVMH
EQKPRPAEPNIYITNSHFHLTRQMFLNDSQINLNVHDHGEKGASGEGKNV
WLQYLRMRKCYMSPIADPNSIDPSSTTKQILPIVMSTEQLAELQGMI*

MIP16821.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11046-PA 267 GF11046-PA 67..266 54..244 646 65.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23196-PA 223 GG23196-PA 1..223 24..247 951 81.2 Plus
Dere\GG18362-PA 239 GG18362-PA 34..229 50..244 543 53.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20934-PA 236 GH20934-PA 32..233 56..246 451 45.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14589-PA 224 CG14589-PA 1..224 24..247 1180 100 Plus
CG14589-PC 249 CG14589-PC 1..224 24..247 1164 98.2 Plus
CG14589-PB 186 CG14589-PB 1..186 24..247 940 83 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18371-PA 256 GI18371-PA 38..256 35..247 524 48.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16245-PA 154 GL16245-PA 2..141 108..244 207 37.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13099-PA 215 GA13099-PA 35..208 68..245 223 34.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16535-PA 223 GM16535-PA 1..223 24..247 1112 92 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10397-PA 223 GD10397-PA 1..223 24..247 1118 92.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21446-PA 261 GJ21446-PA 24..261 28..247 518 45.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21331-PA 219 GK21331-PA 1..219 40..247 490 45.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20714-PA 232 GE20714-PA 2..232 16..247 925 76.3 Plus
Dyak\GE17850-PA 230 GE17850-PA 29..230 48..247 562 52.9 Plus