Clone MIP16835 Report

Search the DGRC for MIP16835

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:168
Well:35
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG16965-RC
Protein status:MIP16835.pep: gold
Sequenced Size:2294

Clone Sequence Records

MIP16835.complete Sequence

2294 bp assembled on 2010-01-28

GenBank Submission: BT120276.1

> MIP16835.complete
AGTAGATCGTGAAAATATGCGGAAAAGTATTGTTTTCATCGGTTTAATAG
CGCTTTTCCAGAGTTGCTTGGCTGAAACGCCGGAAACGTATCTCCTCAAA
ACACACAGTCTTCCCTCGGACCTGAATTTTATGCCCACCCTGGGCAATGG
CCACGTGGGATACACGATCTTCGGAGATGCGATCTTTATGAATGGAGTCT
ACAACGGAGCCGGCGGAAACAGCAAGCGTGCTCGCATTCCCAACTGGATA
AATATCAGCACGGAAGCTTGTGATCGGTTCGGTTGTGCCACTGACAGCGA
TGTGGTAAATGGAACCAGCTACGAGATGAATCTACGAGATGGCTACTTCC
GGGTTGTCACAACATACAGAGGACTAGGGATTTCAGTGGAACAGAGAACC
TATCCGCACAAGTACTACAATCGTGCTTTAGTCTATGAAGTGGTGGCTAA
TAGACTTGCTGGCCGAAACTCAAGGATTAACTCTCCAAAGTTCCTAAGGC
TAACACAATTCGCTGGTAACTTCAGTGATGCCTTCGACTTTGTGGTGGTC
AACAATGGCAGCTCAGCCAGCGGCAATTACCGCACACTTCGCGGACAAAC
AAAGGTGGTTGAGAACGAGCAGTTCCAACCAGATCCTCAGGAGATCTTTG
TCCTCTTCAGTGAATCCTTGGAGCAACCCCTTGAACTGCAGTGGCCCACG
TGGCAGGATCAATTAAGCCATCGAGTTATCATTGCCATAGACAGAGACGA
AAGTGTGACACGAAAGGAACTGCAGGATGTGCTTCAGTTGAGCTCCGATA
ATCTTCTCCAGAAGCACTCGCAATCGTGGAACAGTTTTTGGGACGATGAG
TTCTCCATTGAAATCAAGGGTGATGCTCTGGAACTGTCGCAGATTGTAAA
TGCTGGCATATTCTATATAGTAAGTTCCCTTCCGTCACTGGAAACCAATC
AGAAAAACGAACTATTCTATGGATTAAGTCCTACTGGCTTGGGGCGTGGC
AATCTGGAGGCGGATTACCAGGGGCACAACTTCTGGGACACGGAGATCTG
GATGCTGCCGATAGTTTCGCTATTCGGCTTGGATTATGCAAAAGAGGTGC
TGGGCTATCGCAGCAGAAAACTGGAGGCAGCCAAATATCATGCAAATGCC
ACTGGTTATAAGGGAGCTAGATTTCCCTGGGAGAGTGCGTACACTGGCAC
AGAGGTCACAAATCCCTGTTGTCCCGAGGTGGCGGAACAGGAGATACATA
TATCCCCCGATATATCCTTTGCCCTACAAAAATTTTTCGCCCAATCAAAC
GATAGCGAATGGACCTGTGGCACTGCATGGCCCATAACCGCCGATGTGGC
CGATTTCCTCGTTAGCCGAGCCACCTGTGATGATTCCACCAAAACATGCC
ACTTGCTAAACGTCATGGGACCCGATGAAGATCATCCGAATGTTAACGAT
AATGTGTACACCAATGCTGTGTCCAAAATTGCACTAAACTTTGCCGAATG
GTTGGCCAAACATTGTGGTAATGCCAGCACCGAACGTTTGGAGAAATGGC
GCGAGGTCAGCGATGGTTTGGTGATTCTACGCGATGAGAGCCTAAACTAT
CATCCCGAGTATGCGGGCTATGTCCGCGACACCATTATCAAGCAGGCAGA
CACCATTCTACTTGGATACCCCTTGAATTTCGATAAAAGCTCCACACACA
TTAATGATCTACGGTTTTACGCAAATGTAACCCGTGAATCTGGTCCAGCA
ATGACGTGGTCCATGTTCGCAGCCAACTATCTACGAAACCTTCAGCTAAC
TCTGGCAAATGAGTATTTCGAACGTGGCTACAAGAGCTACGTACGGCCGG
AGTTTAAAGTATGGAGTGAAACGCCCATTGGTTACGATGGCTCGGCGAAC
TTCCTAACCGGCATTGGTGGTTTCCTTCAAGCTCTGATCTTCGGTTACGG
TGGCTTGGATTTCGGGCGTACTGATGACGATCAATTTTTGATGTTTTTCG
GTATATCTTTGACGCCGCCAAATGTTGAAGAAGTCTTTATCAACTCTATT
CCATACGGGCAGCATGCTAAATGTACACTTCGATTTAAAAGCAGACACTC
TGAAATTTCGTGTTACGACAGGATTGGTAAGGGCTTTAAGATGGCCCAAG
GCCAGAAGCGAACCATCCTTGGCAGATCCTTTAACTTGACCCGCCAAAAT
GAAGATCCTCCCATTGAGATTAGCTTTTTAAGATAAATCCAAAGTGTATT
TGAATAAATATGAAGAAAATTACATAAAAAAAAAAAAAAAAAAA

MIP16835.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG16965.a 2283 CG16965.a 29..2283 1..2255 11275 100 Plus
CG16965-RA 2210 CG16965-RA 8..2193 1..2186 10930 100 Plus
CG6686.b 2910 CG6686.b 2854..2910 2276..2220 285 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 11981067..11981754 483..1170 3410 99.7 Plus
chr2L 23010047 chr2L 11981807..11982328 1168..1689 2610 100 Plus
chr2L 23010047 chr2L 11982386..11982886 1686..2186 2505 100 Plus
chr2L 23010047 chr2L 11980630..11981007 105..482 1890 100 Plus
chr2L 23010047 chr2L 11980269..11980376 1..108 525 99.1 Plus
chr2L 23010047 chr2L 11982945..11983033 2187..2275 445 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:20:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11982414..11983101 483..1170 3440 100 Plus
2L 23513712 2L 11983154..11983675 1168..1689 2610 100 Plus
2L 23513712 2L 11983733..11984233 1686..2186 2505 100 Plus
2L 23513712 2L 11981977..11982354 105..482 1890 100 Plus
2L 23513712 2L 11981616..11981723 1..108 540 100 Plus
2L 23513712 2L 11984292..11984381 2187..2276 450 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:37:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11982414..11983101 483..1170 3440 100 Plus
2L 23513712 2L 11983154..11983675 1168..1689 2610 100 Plus
2L 23513712 2L 11983733..11984233 1686..2186 2505 100 Plus
2L 23513712 2L 11981977..11982354 105..482 1890 100 Plus
2L 23513712 2L 11981616..11981723 1..108 540 100 Plus
2L 23513712 2L 11984292..11984381 2187..2276 450 100 Plus
Blast to na_te.dros performed on 2019-03-15 23:28:47 has no hits.

MIP16835.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:29:48 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 11980269..11980376 1..108 99 -> Plus
chr2L 11980634..11981007 109..482 100 -> Plus
chr2L 11981067..11981754 483..1170 99 -> Plus
chr2L 11981810..11982328 1171..1689 100 -> Plus
chr2L 11982390..11982886 1690..2186 100 -> Plus
chr2L 11982945..11983033 2187..2275 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 18:15:48 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RA 1..2056 131..2186 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:14:25 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RB 1..2106 131..2236 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:05:38 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RC 1..2220 17..2236 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:36:00 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RC 1..2220 17..2236 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 18:15:45 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RA 1..2056 131..2186 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:14:25 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RB 1..2275 1..2275 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:05:38 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RC 26..2300 1..2275 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:36:00 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
CG16965-RC 26..2300 1..2275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:29:48 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11981616..11981723 1..108 100 -> Plus
2L 11981981..11982354 109..482 100 -> Plus
2L 11982414..11983101 483..1170 100 -> Plus
2L 11983157..11983675 1171..1689 100 -> Plus
2L 11983737..11984233 1690..2186 100 -> Plus
2L 11984292..11984380 2187..2275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:29:48 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11981616..11981723 1..108 100 -> Plus
2L 11981981..11982354 109..482 100 -> Plus
2L 11982414..11983101 483..1170 100 -> Plus
2L 11983157..11983675 1171..1689 100 -> Plus
2L 11983737..11984233 1690..2186 100 -> Plus
2L 11984292..11984380 2187..2275 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:29:48 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11981616..11981723 1..108 100 -> Plus
2L 11981981..11982354 109..482 100 -> Plus
2L 11982414..11983101 483..1170 100 -> Plus
2L 11983157..11983675 1171..1689 100 -> Plus
2L 11983737..11984233 1690..2186 100 -> Plus
2L 11984292..11984380 2187..2275 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:05:38 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11981981..11982354 109..482 100 -> Plus
arm_2L 11981616..11981723 1..108 100 -> Plus
arm_2L 11982414..11983101 483..1170 100 -> Plus
arm_2L 11983157..11983675 1171..1689 100 -> Plus
arm_2L 11983737..11984233 1690..2186 100 -> Plus
arm_2L 11984292..11984380 2187..2275 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:04:46 Download gff for MIP16835.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11981981..11982354 109..482 100 -> Plus
2L 11982414..11983101 483..1170 100 -> Plus
2L 11983157..11983675 1171..1689 100 -> Plus
2L 11983737..11984233 1690..2186 100 -> Plus
2L 11984292..11984380 2187..2275 100   Plus
2L 11981616..11981723 1..108 100 -> Plus

MIP16835.hyp Sequence

Translation from 0 to 2235

> MIP16835.hyp
VDRENMRKSIVFIGLIALFQSCLAETPETYLLKTHSLPSDLNFMPTLGNG
HVGYTIFGDAIFMNGVYNGAGGNSKRARIPNWINISTEACDRFGCATDSD
VVNGTSYEMNLRDGYFRVVTTYRGLGISVEQRTYPHKYYNRALVYEVVAN
RLAGRNSRINSPKFLRLTQFAGNFSDAFDFVVVNNGSSASGNYRTLRGQT
KVVENEQFQPDPQEIFVLFSESLEQPLELQWPTWQDQLSHRVIIAIDRDE
SVTRKELQDVLQLSSDNLLQKHSQSWNSFWDDEFSIEIKGDALELSQIVN
AGIFYIVSSLPSLETNQKNELFYGLSPTGLGRGNLEADYQGHNFWDTEIW
MLPIVSLFGLDYAKEVLGYRSRKLEAAKYHANATGYKGARFPWESAYTGT
EVTNPCCPEVAEQEIHISPDISFALQKFFAQSNDSEWTCGTAWPITADVA
DFLVSRATCDDSTKTCHLLNVMGPDEDHPNVNDNVYTNAVSKIALNFAEW
LAKHCGNASTERLEKWREVSDGLVILRDESLNYHPEYAGYVRDTIIKQAD
TILLGYPLNFDKSSTHINDLRFYANVTRESGPAMTWSMFAANYLRNLQLT
LANEYFERGYKSYVRPEFKVWSETPIGYDGSANFLTGIGGFLQALIFGYG
GLDFGRTDDDQFLMFFGISLTPPNVEEVFINSIPYGQHAKCTLRFKSRHS
EISCYDRIGKGFKMAQGQKRTILGRSFNLTRQNEDPPIEISFLR*

MIP16835.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG16965-PC 739 CG16965-PC 1..739 6..744 3929 100 Plus

MIP16835.pep Sequence

Translation from 16 to 2235

> MIP16835.pep
MRKSIVFIGLIALFQSCLAETPETYLLKTHSLPSDLNFMPTLGNGHVGYT
IFGDAIFMNGVYNGAGGNSKRARIPNWINISTEACDRFGCATDSDVVNGT
SYEMNLRDGYFRVVTTYRGLGISVEQRTYPHKYYNRALVYEVVANRLAGR
NSRINSPKFLRLTQFAGNFSDAFDFVVVNNGSSASGNYRTLRGQTKVVEN
EQFQPDPQEIFVLFSESLEQPLELQWPTWQDQLSHRVIIAIDRDESVTRK
ELQDVLQLSSDNLLQKHSQSWNSFWDDEFSIEIKGDALELSQIVNAGIFY
IVSSLPSLETNQKNELFYGLSPTGLGRGNLEADYQGHNFWDTEIWMLPIV
SLFGLDYAKEVLGYRSRKLEAAKYHANATGYKGARFPWESAYTGTEVTNP
CCPEVAEQEIHISPDISFALQKFFAQSNDSEWTCGTAWPITADVADFLVS
RATCDDSTKTCHLLNVMGPDEDHPNVNDNVYTNAVSKIALNFAEWLAKHC
GNASTERLEKWREVSDGLVILRDESLNYHPEYAGYVRDTIIKQADTILLG
YPLNFDKSSTHINDLRFYANVTRESGPAMTWSMFAANYLRNLQLTLANEY
FERGYKSYVRPEFKVWSETPIGYDGSANFLTGIGGFLQALIFGYGGLDFG
RTDDDQFLMFFGISLTPPNVEEVFINSIPYGQHAKCTLRFKSRHSEISCY
DRIGKGFKMAQGQKRTILGRSFNLTRQNEDPPIEISFLR*

MIP16835.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21627-PA 700 GF21627-PA 1..700 39..739 2780 71.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23749-PA 662 GG23749-PA 1..662 39..739 3244 85.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13818-PA 700 GH13818-PA 1..680 39..723 2396 63.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG16965-PC 739 CG16965-PC 1..739 1..739 3929 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24803-PA 694 GI24803-PA 1..693 39..738 2322 60.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18536-PA 745 GL18536-PA 36..744 31..738 2752 69.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14242-PA 740 GA14242-PA 1..739 1..738 2803 68.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26677-PA 701 GM26677-PA 1..701 39..739 3576 93.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23801-PA 637 GD23801-PA 9..621 32..644 3137 93.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22522-PA 706 GJ22522-PA 2..705 31..738 2382 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15172-PA 702 GK15172-PA 1..701 39..738 2645 69.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:01:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18556-PA 659 GE18556-PA 1..659 39..739 3226 85.3 Plus