Clone MIP16841 Report

Search the DGRC for MIP16841

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:168
Well:41
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG18155-RB
Protein status:MIP16841.pep: gold
Sequenced Size:2065

Clone Sequence Records

MIP16841.complete Sequence

2065 bp assembled on 2010-01-28

GenBank Submission: BT120275.1

> MIP16841.complete
TGAAAATCTGAGTTAAATTTTGCTCTTTGTACTATTATTTAAAATAGCTG
CATTCGCGCACACACCATCAAATAATCCATAAAAAAAAAAAAAAAACAAA
AAAAAAACAGTAAGATGCTGCTACTTCGCCGTTGCCACAAGTTAAAGTTG
CGTCCATTGGCCCGTCTTTGCTCCGCCGAATTGATACATAAGGATGGCTT
CATCGAGAAGCTGCGCCATAGTTTCGATGAAGAGGAGCGTAGTAATGTGG
TGGTGCCCACGTTCAAAAAGGCTATGCTCTATCCGGATGAGATCGCCGTG
AAAGACATCAATGGGGAGTACACTTATTTTCAATTGTATATGGCCGCCAA
ACGTCTGGGCATTCAGATCTCAAATATATGTGGCGGCGCCGCGCTTTCGA
ATGTAACATACTTGTGCTCGAACAACGCCCTGTGGATAGCTATACAATGG
AGCTGTTGGATTTCCGGACAAGTGGCAGTTCCACTGGAATCCGGCCAGGC
GATAGATCAATTGCAACGGCAGGCATCGAACTGCAAGACCAAGCTACTGA
TAGCCACTAAGGAATTTGAGTCACTTGCCCAGGAATTGTCGCAGGGTGTG
AAATCAGCTACCATCATATTGGATCACTCATTTCTCCCGACGGCGGAGAG
TGTATCCTCGACATCGATGTATGCCAAACAGCTGGTGGCGATCCAGGGTG
TTATCGTAACGGAAAATACGTTTCCAAACGATTTCTATTCCAAGGCACCA
GCCATGCTGATCTATACGCCCAATGCGGTCAATAGTCCCAAGCCAGTGTT
GTTGACCCATCGGAATATCGAAGCTCAGATGCGATGTTTGATCGGAACTT
GGCATTTGGGACCTACAGACTGTATGCTGCCAATACTATCCATGAATCGA
ATGCATGCCGCCTTGGCAGCAGTTCTCAGTGTGGGCGGTAATGTGGTGTT
GCAGCAAAAATTCGATGGTCACAATGCGTGGAGTGCTCTATTGGGCATAA
ATAGCCCATCCAAGCAACGGGTCACCCTCTTTTTGGCCATGCCAATTGTC
TACAAGCGTCTGATTGTCGAGTATGAGAAAATGTTTGCCAAGGATTCGAG
AATGGTTGAGTACATTGTGAATCATTGCCGGCAAAAGATACGATTGATGG
CGACAGCTTTTGCCTTGCTACCGGATTCGGTGTTTTACAGATGGCGCGAG
ATAACGGGTCAAAATATATACGAATACTATGGAATGATGGAAACGGGATT
GGTTTTGGGTCATCCGTTAAATAAACGACAACGTGACTCTCCACATAATG
GTCCAACAGCGGTTGCTATGGCCAATAATACCGCCCCCAACGATTATCGA
CCGGGTACGTTGGGTTCGCCGTTGAAGGGAGTCACGGCCCGATTGATCAG
TAATAAGGGTGACGAGCTAATAACCTGCAAAAACGAACTCGGTGGATCCG
TGGATAGTGGCCTAATACCGGTGGAGGATATCGGCGGCGATGCATCCTTG
GCGGGAACCATAATTGGTGAACTTCAAATTGCTGGTTCCAATTTGGTGTC
CAATACATTGGCTAACAACAATCAGGAAATGGAACACAAAGGAACCACAA
ACAATGAGGAGCAGGAGAACAACCAAGATGGTTTCTTTAAAACCGGAGAC
ATTTGCGCCTATCGTAACGGAAACTTTTATTTTTTAAGTAAAAGCAGCGA
TATCTTCACCGTCGGCGGTTATAAGGTATACGGATCGGAAATCAAAAAGG
TATTGATCTCACATCCGAATATCAACGATGTGGCTGTCTTAGGTATTCCC
AATAAAATGTGGGGCCATCGTCTTGGTGTCATATGCATTGTATCCCCGGA
TGCGGATATTGATTTGGATGCGATCAAGACATACTGCTATCGCCACCTAC
CAGCCCACAAATGCCCTACCGTTTTCAAGACCCTCGTTTCCAAGTAGATA
TAAGACGACCCCTAAGCCCATAGCTGCAAATTTAAGTGATTACTGACTGT
TATGATAATAGAAATAAAAATAATAATAATAATATCATTTAAAAAAAAAA
AAAAAAAAAAAAAAA

MIP16841.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18155-RB 2069 CG18155-RB 22..2063 1..2042 10210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:11:12
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 7221521..7223179 382..2040 8295 100 Plus
chrX 22417052 chrX 7220977..7221169 1..193 965 100 Plus
chrX 22417052 chrX 7221247..7221439 191..383 965 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:20:57 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:11:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7329590..7331250 382..2042 8305 100 Plus
X 23542271 X 7329046..7329238 1..193 965 100 Plus
X 23542271 X 7329316..7329508 191..383 965 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:37:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 7337688..7339348 382..2042 8305 100 Plus
X 23527363 X 7337144..7337336 1..193 965 100 Plus
X 23527363 X 7337414..7337606 191..383 965 100 Plus
Blast to na_te.dros performed on 2019-03-16 04:11:10 has no hits.

MIP16841.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:12:10 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 7220977..7221168 1..192 100 -> Plus
chrX 7221249..7221438 193..382 100 -> Plus
chrX 7221522..7223179 383..2040 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 17:42:49 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..1833 115..1947 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:14:23 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..1833 115..1947 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:20:03 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..1833 115..1947 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:30:12 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..1833 115..1947 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 17:42:47 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..1926 115..2040 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:14:23 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..1926 115..2040 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:20:03 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..2040 1..2040 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:30:12 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
CG18155-RB 1..2040 1..2040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:10 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
X 7329046..7329237 1..192 100 -> Plus
X 7329318..7329507 193..382 100 -> Plus
X 7329591..7331248 383..2040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:10 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
X 7329046..7329237 1..192 100 -> Plus
X 7329318..7329507 193..382 100 -> Plus
X 7329591..7331248 383..2040 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:12:10 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
X 7329046..7329237 1..192 100 -> Plus
X 7329318..7329507 193..382 100 -> Plus
X 7329591..7331248 383..2040 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:20:03 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7223079..7223270 1..192 100 -> Plus
arm_X 7223351..7223540 193..382 100 -> Plus
arm_X 7223624..7225281 383..2040 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:04:45 Download gff for MIP16841.complete
Subject Subject Range Query Range Percent Splice Strand
X 7337689..7339346 383..2040 100   Plus
X 7337144..7337335 1..192 100 -> Plus
X 7337416..7337605 193..382 100 -> Plus

MIP16841.hyp Sequence

Translation from 114 to 1946

> MIP16841.hyp
MLLLRRCHKLKLRPLARLCSAELIHKDGFIEKLRHSFDEEERSNVVVPTF
KKAMLYPDEIAVKDINGEYTYFQLYMAAKRLGIQISNICGGAALSNVTYL
CSNNALWIAIQWSCWISGQVAVPLESGQAIDQLQRQASNCKTKLLIATKE
FESLAQELSQGVKSATIILDHSFLPTAESVSSTSMYAKQLVAIQGVIVTE
NTFPNDFYSKAPAMLIYTPNAVNSPKPVLLTHRNIEAQMRCLIGTWHLGP
TDCMLPILSMNRMHAALAAVLSVGGNVVLQQKFDGHNAWSALLGINSPSK
QRVTLFLAMPIVYKRLIVEYEKMFAKDSRMVEYIVNHCRQKIRLMATAFA
LLPDSVFYRWREITGQNIYEYYGMMETGLVLGHPLNKRQRDSPHNGPTAV
AMANNTAPNDYRPGTLGSPLKGVTARLISNKGDELITCKNELGGSVDSGL
IPVEDIGGDASLAGTIIGELQIAGSNLVSNTLANNNQEMEHKGTTNNEEQ
ENNQDGFFKTGDICAYRNGNFYFLSKSSDIFTVGGYKVYGSEIKKVLISH
PNINDVAVLGIPNKMWGHRLGVICIVSPDADIDLDAIKTYCYRHLPAHKC
PTVFKTLVSK*

MIP16841.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG18155-PB 610 CG18155-PB 1..610 1..610 3184 100 Plus

MIP16841.pep Sequence

Translation from 114 to 1946

> MIP16841.pep
MLLLRRCHKLKLRPLARLCSAELIHKDGFIEKLRHSFDEEERSNVVVPTF
KKAMLYPDEIAVKDINGEYTYFQLYMAAKRLGIQISNICGGAALSNVTYL
CSNNALWIAIQWSCWISGQVAVPLESGQAIDQLQRQASNCKTKLLIATKE
FESLAQELSQGVKSATIILDHSFLPTAESVSSTSMYAKQLVAIQGVIVTE
NTFPNDFYSKAPAMLIYTPNAVNSPKPVLLTHRNIEAQMRCLIGTWHLGP
TDCMLPILSMNRMHAALAAVLSVGGNVVLQQKFDGHNAWSALLGINSPSK
QRVTLFLAMPIVYKRLIVEYEKMFAKDSRMVEYIVNHCRQKIRLMATAFA
LLPDSVFYRWREITGQNIYEYYGMMETGLVLGHPLNKRQRDSPHNGPTAV
AMANNTAPNDYRPGTLGSPLKGVTARLISNKGDELITCKNELGGSVDSGL
IPVEDIGGDASLAGTIIGELQIAGSNLVSNTLANNNQEMEHKGTTNNEEQ
ENNQDGFFKTGDICAYRNGNFYFLSKSSDIFTVGGYKVYGSEIKKVLISH
PNINDVAVLGIPNKMWGHRLGVICIVSPDADIDLDAIKTYCYRHLPAHKC
PTVFKTLVSK*

MIP16841.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21140-PA 620 GF21140-PA 1..603 10..610 2694 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19640-PA 600 GG19640-PA 1..600 1..610 2894 87.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24264-PA 551 GH24264-PA 1..551 2..610 1848 57.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:52:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18155-PB 610 CG18155-PB 1..610 1..610 3184 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15946-PA 582 GI15946-PA 6..582 21..610 2090 64.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19599-PA 615 GL19599-PA 5..612 3..607 1622 51.2 Plus
Dper\GL14698-PA 424 GL14698-PA 84..424 252..610 916 50.4 Plus
Dper\GL19606-PA 262 GL19606-PA 1..237 33..261 562 48.3 Plus
Dper\GL14698-PA 424 GL14698-PA 1..115 54..173 172 32.2 Plus
Dper\GL27076-PA 536 GL27076-PA 343..505 427..599 154 27.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23739-PA 598 GA23739-PA 16..598 13..610 1642 50.9 Plus
Dpse\GA26022-PA 613 GA26022-PA 5..610 3..607 1613 50.7 Plus
Dpse\GA26027-PA 323 GA26027-PA 11..248 33..264 569 49.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17515-PA 550 GM17515-PA 1..495 54..561 2333 86.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16841-PA 86 GD16841-PA 1..79 1..90 375 80 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14852-PA 619 GJ14852-PA 1..619 1..610 2163 62.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21041-PA 442 GK21041-PA 1..442 185..610 1306 55.7 Plus
Dwil\GK19734-PA 854 GK19734-PA 404..566 427..599 156 27.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:57:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15712-PA 614 GE15712-PA 1..614 1..610 2913 87.8 Plus