Clone MIP16848 Report

Search the DGRC for MIP16848

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:168
Well:48
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG31661-RA
Protein status:MIP16848.pep: gold
Sequenced Size:1371

Clone Sequence Records

MIP16848.complete Sequence

1371 bp assembled on 2010-01-28

GenBank Submission: BT120252.1

> MIP16848.complete
AGTGAGGCACCATGAATATACGTGTGATTATCCTACTTTTCTGTCTGATT
GTGTTTGTAGGCGGTAAGAAAGTACACAGATTTCGACTGGAGAGACGATC
CCACCGTCACCACAAGATTCCTCACGCCCATCTGCACCTGCAGTTTCGGA
ATGCGCTGCGAAGGAAGTACGGATTTACTCCACTCCGTACGGTGAATGCT
GTGAATGTGACCAGCGAGTCCGGTAAGGGAGTCGTGATAACCGAGCCCCT
GATAAATTCCTACGATACCAACTTTTTCGGGGTTGTGTCGGTCGGAGATC
AATCATTCACCATGCAATTCGACACGGGTTCCTCGGACTTTTGGGTGCCC
AGTTCCCATTGCAGATTCTGCATCAAAACGTGCGGGAACAAGTTTTTCCG
GAAGTCCAATTCCAAATCCTTTCGGTCAAGTGGAACTCCATTTAGCATCA
CCTACGGATCGGGCTCCGTGAAGGGAATCGTGGCCTCGGATAATGTTGGC
TTCGGCGATCTAAAGATCCAGAACCAAGGCATTGGATTGGTCAACATATC
GGACTCCTGCTCCGTTTTCGATGGAATCGCTGGCTTCGCCTTTCAGCAAC
TCTCTATGACCAAATCGGTCCCTTCTTTCCAGCAAATGATTGACCAACAG
TTGGTGGAGCAGCCAATTTTCTCGTTTCATCTGAAAAGTGGGTCCAGTGA
TGGGGGCTCCATGATACTCGGTGGATCGAACTCGAGTCTGTACTACGGTC
CGTTGACCTATACAAATGTGACCGAGGCCAAGTACTGGAGCTTCAAGCTG
GACTTCATAGCGGTCCATGGCAAGGGTTCCAGGAGCTCCCGCACGGGGAA
CAAGGCCATCATGGACACGGGAACCTCCCTGATCGTTGGTCCTGTCCTGG
AAGTCCTCTACATCAACAAGGACATCGGAGCCGAGCACAATAAAACCTAT
AACCTGTACACCGTCGCCTGTGAATCGATTCCCCAACTTCCGATCATCGT
CTTTGGCATTGCTGGCAAGGAGTTCTTCGTGAAGCCACATACCTACGTCA
TCAGGTACGATAATTTTTGCTTCTCCGCCTTCATGGACATGCTAGGCCTG
CAGTACTGGATACTCGGTGATGCCTTCATGCGGGAGAACTATGTGGAGTT
CGATTGGGCTAGGAGAAGAATGGGCATAGCACCGGCTGTATGAGGGGATT
ATTCATTTTATTATGACTATCACACCTTGCGTGATAAGTGAATTTATTTA
AAAAAATATTCGGACTATAATTTGGTAAACAAATATTACCAATTGTATAA
ATGGCAATGACAGAAAAAAATTCAATTACATTGTAAAAGTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

MIP16848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31661-RA 1182 CG31661-RA 1..1182 12..1193 5895 99.9 Plus
CG18131-RA 1528 CG18131-RA 1383..1528 1341..1196 730 100 Minus
CG18131-RB 1680 CG18131-RB 1535..1680 1341..1196 730 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:13:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1497168..1498508 1..1341 6675 99.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:20:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1497243..1498583 1..1341 6690 99.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1497243..1498583 1..1341 6690 99.9 Plus
Blast to na_te.dros performed on 2019-03-16 05:13:06 has no hits.

MIP16848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:13:50 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1497168..1498508 1..1341 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 12:47:08 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1182 12..1193 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:13:42 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1182 12..1193 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:16 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1182 12..1193 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:59:46 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1182 12..1193 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 12:47:06 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1182 12..1193 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:13:41 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1182 12..1193 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:16 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1341 1..1341 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:59:46 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG31661-RA 1..1341 1..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:50 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1497243..1498583 1..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:50 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1497243..1498583 1..1341 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:13:50 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1497243..1498583 1..1341 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:16 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1497243..1498583 1..1341 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:04:15 Download gff for MIP16848.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1497243..1498583 1..1341 99   Plus

MIP16848.hyp Sequence

Translation from 11 to 1192

> MIP16848.hyp
MNIRVIILLFCLIVFVGGKKVHRFRLERRSHRHHKIPHAHLHLQFRNALR
RKYGFTPLRTVNAVNVTSESGKGVVITEPLINSYDTNFFGVVSVGDQSFT
MQFDTGSSDFWVPSSHCRFCIKTCGNKFFRKSNSKSFRSSGTPFSITYGS
GSVKGIVASDNVGFGDLKIQNQGIGLVNISDSCSVFDGIAGFAFQQLSMT
KSVPSFQQMIDQQLVEQPIFSFHLKSGSSDGGSMILGGSNSSLYYGPLTY
TNVTEAKYWSFKLDFIAVHGKGSRSSRTGNKAIMDTGTSLIVGPVLEVLY
INKDIGAEHNKTYNLYTVACESIPQLPIIVFGIAGKEFFVKPHTYVIRYD
NFCFSAFMDMLGLQYWILGDAFMRENYVEFDWARRRMGIAPAV*

MIP16848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:15:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG31661-PA 393 CG31661-PA 1..393 1..393 2068 100 Plus
pcl-PA 407 CG13374-PA 6..378 3..391 551 36.4 Plus
CG5863-PA 395 CG5863-PA 43..394 42..392 549 38.1 Plus
Bace-PB 372 CG13095-PB 41..370 46..391 519 36 Plus
Bace-PA 372 CG13095-PA 41..370 46..391 519 36 Plus

MIP16848.pep Sequence

Translation from 11 to 1192

> MIP16848.pep
MNIRVIILLFCLIVFVGGKKVHRFRLERRSHRHHKIPHAHLHLQFRNALR
RKYGFTPLRTVNAVNVTSESGKGVVITEPLINSYDTNFFGVVSVGDQSFT
MQFDTGSSDFWVPSSHCRFCIKTCGNKFFRKSNSKSFRSSGTPFSITYGS
GSVKGIVASDNVGFGDLKIQNQGIGLVNISDSCSVFDGIAGFAFQQLSMT
KSVPSFQQMIDQQLVEQPIFSFHLKSGSSDGGSMILGGSNSSLYYGPLTY
TNVTEAKYWSFKLDFIAVHGKGSRSSRTGNKAIMDTGTSLIVGPVLEVLY
INKDIGAEHNKTYNLYTVACESIPQLPIIVFGIAGKEFFVKPHTYVIRYD
NFCFSAFMDMLGLQYWILGDAFMRENYVEFDWARRRMGIAPAV*

MIP16848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15195-PA 392 GF15195-PA 1..392 1..393 1272 59.8 Plus
Dana\GF19728-PA 390 GF19728-PA 1..387 3..391 544 35.2 Plus
Dana\GF14369-PA 371 GF14369-PA 5..369 7..391 541 33.8 Plus
Dana\GF11236-PA 388 GF11236-PA 57..387 76..392 519 37.9 Plus
Dana\GF16402-PA 300 GF16402-PA 1..300 101..393 510 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24796-PA 393 GG24796-PA 1..393 1..393 1703 81.7 Plus
Dere\GG22202-PA 395 GG22202-PA 36..395 24..393 553 36.5 Plus
Dere\GG12763-PA 407 GG12763-PA 6..378 3..391 535 34.7 Plus
Dere\GG24067-PA 372 GG24067-PA 38..370 43..391 532 36.4 Plus
Dere\GG23678-PA 392 GG23678-PA 19..387 20..390 528 34.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24623-PA 374 GH24623-PA 5..372 7..391 554 34.3 Plus
Dgri\GH24344-PA 373 GH24344-PA 57..371 78..391 517 35.8 Plus
Dgri\GH21578-PA 388 GH21578-PA 54..387 73..392 495 36.4 Plus
Dgri\GH24624-PA 446 GH24624-PA 30..385 19..390 492 34.7 Plus
Dgri\GH11415-PA 416 GH11415-PA 28..413 22..390 491 33.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:01:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31661-PA 393 CG31661-PA 1..393 1..393 2068 100 Plus
Pgcl-PA 407 CG13374-PA 6..378 3..391 551 36.4 Plus
CG5863-PA 395 CG5863-PA 43..394 42..392 549 38.1 Plus
CG10104-PA 404 CG10104-PA 72..402 75..392 521 36.7 Plus
CG33128-PA 405 CG33128-PA 82..402 77..390 521 37.3 Plus
Bace-PB 372 CG13095-PB 41..370 46..391 519 36 Plus
Bace-PA 372 CG13095-PA 41..370 46..391 519 36 Plus
CG17134-PA 391 CG17134-PA 4..386 7..390 516 33.9 Plus
cathD-PC 392 CG1548-PC 61..391 76..392 516 37.3 Plus
cathD-PB 392 CG1548-PB 61..391 76..392 516 37.3 Plus
cathD-PA 392 CG1548-PA 61..391 76..392 516 37.3 Plus
CG31926-PB 410 CG31926-PB 82..409 80..393 454 35 Plus
CG31926-PA 410 CG31926-PA 82..409 80..393 454 35 Plus
CG31928-PB 418 CG31928-PB 13..418 6..393 449 30 Plus
CG31928-PA 418 CG31928-PA 13..418 6..393 449 30 Plus
CG6508-PA 423 CG6508-PA 63..385 77..390 424 34.8 Plus
CG17283-PA 465 CG17283-PA 139..459 77..390 390 34.8 Plus
CG5860-PA 370 CG5860-PA 44..369 68..392 341 28.6 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11124-PA 373 GI11124-PA 5..371 7..391 534 34 Plus
Dmoj\GI11125-PA 371 GI11125-PA 5..369 7..391 525 32.3 Plus
Dmoj\GI11126-PA 421 GI11126-PA 17..382 18..390 496 32.2 Plus
Dmoj\GI14564-PA 434 GI14564-PA 39..434 20..393 491 30.6 Plus
Dmoj\GI14567-PA 402 GI14567-PA 13..400 13..391 480 31.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15716-PA 249 GL15716-PA 1..226 1..230 567 46.1 Plus
Dper\GL23572-PA 393 GL23572-PA 35..393 24..393 553 36.9 Plus
Dper\GL25647-PA 373 GL25647-PA 6..371 7..391 546 33.4 Plus
Dper\GL15683-PA 413 GL15683-PA 30..413 19..393 516 31.4 Plus
Dper\GL10692-PA 399 GL10692-PA 66..397 75..392 515 35.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16375-PA 387 GA16375-PA 1..386 1..392 965 48.9 Plus
Dpse\GA19187-PA 393 GA19187-PA 35..393 24..393 554 36.9 Plus
Dpse\GA25369-PA 373 GA25369-PA 6..371 7..391 546 33.4 Plus
Dpse\GA26724-PA 416 GA26724-PA 7..383 4..390 545 33.5 Plus
Dpse\GA22213-PA 373 GA22213-PA 6..371 7..391 542 33.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16822-PA 393 GM16822-PA 1..393 1..393 2061 97.7 Plus
Dsec\GM19043-PA 407 GM19043-PA 6..378 3..391 547 35.8 Plus
Dsec\GM15229-PA 395 GM15229-PA 36..395 24..393 544 36.7 Plus
Dsec\GM12869-PA 372 GM12869-PA 38..370 43..391 537 36.2 Plus
Dsec\GM20753-PA 392 GM20753-PA 61..389 76..390 523 37.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23101-PA 393 GD23101-PA 1..393 1..393 2072 98 Plus
Dsim\GD19155-PA 395 GD19155-PA 36..395 24..393 546 37 Plus
Dsim\GD23099-PA 405 GD23099-PA 5..402 8..390 503 33.7 Plus
Dsim\GD10217-PA 324 GD10217-PA 2..323 85..392 502 37.4 Plus
Dsim\GD11051-PA 399 GD11051-PA 27..397 20..392 486 32.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17069-PA 423 GJ17069-PA 31..423 19..393 558 34.6 Plus
Dvir\GJ15983-PA 372 GJ15983-PA 5..370 7..391 553 33.3 Plus
Dvir\GJ15982-PA 374 GJ15982-PA 5..372 7..391 544 34.3 Plus
Dvir\GJ21122-PA 391 GJ21122-PA 1..390 1..392 478 35 Plus
Dvir\GJ22010-PA 394 GJ22010-PA 66..393 79..393 476 35.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15197-PA 391 GK15197-PA 1..390 1..392 911 47.2 Plus
Dwil\GK19046-PA 392 GK19046-PA 1..391 1..393 911 46.6 Plus
Dwil\GK15198-PA 524 GK15198-PA 168..518 17..368 817 46.6 Plus
Dwil\GK11645-PA 388 GK11645-PA 7..388 8..393 551 34.6 Plus
Dwil\GK24836-PA 372 GK24836-PA 6..370 8..391 540 33.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17615-PA 393 GE17615-PA 1..393 1..393 1853 87 Plus
Dyak\GE16588-PA 408 GE16588-PA 7..379 4..391 554 35.2 Plus
Dyak\GE10129-PA 396 GE10129-PA 71..396 77..393 542 38.7 Plus
Dyak\GE10927-PA 372 GE10927-PA 38..370 43..391 536 36.2 Plus
Dyak\GE23596-PA 392 GE23596-PA 61..391 76..392 521 37.3 Plus