Clone MIP16962 Report

Search the DGRC for MIP16962

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:169
Well:62
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptRhoL-RB
Protein status:MIP16962.pep: gold
Sequenced Size:1223

Clone Sequence Records

MIP16962.complete Sequence

1223 bp assembled on 2010-01-28

GenBank Submission: BT120283.1

> MIP16962.complete
CAATAATGAAAACTTCAAAACGTCAATGGAAACCGATATTCCTTCAAGCG
AACTCAACTGAAATAGAATGTAGATTAGACTGGTGTATTGTATTTACTTA
CTCAGCAATATTTCCAGCTAATGCTATTGAAGTTCATTCTTATACATTCT
TATATTCTGTATGAGCAGTAATCCCATTTCTGCTGTATTCTGCAAGTATC
AAAGTGAAGCCAGCTAGGGGCAAAGCCTGGAGATTTCCGGTTGGATGAAA
GTGTGGGTGCGCCAAGATAAACACACATTCTTGCTTAACAAAGACGAACG
GGGAAAAAAACCGGGAATGACGGCGAACATAACGAAGAGTCCGCGCCCGC
TGAAAATAACCATCGTGGGCGATGGCATGGTGGGCAAAACCTGCATGCTG
ATAACCTACACACGGAACGAGTTCCCCGAGGAGTACATACCCACAGTGTT
CGACAATCACGCCTGCAACATAGCCGTAGATGATCGGGACTACAATCTGA
CCCTCTGGGACACTGCCGGCCAGGAGGATTACGAAAGGCTGCGCCCCCTG
AGCTATCCCAGTACCAACTGCTTCCTGTTGTGCTATTCGATCAGCAGTAG
GACCTCATTCGAAAACGTGAAAAGCAAGTGGTGGCCGGAGATCCGTCACT
TCTCCGCCCACGTTCCCGTGGTTCTCGTGGGCACCAAACTGGACTTGCGC
ATTCCCAACTCGGAGAAGTTCGTGACCACACAGGAGGGAAAAAAGATGCG
CAAAGAGATACACGCATTCAACTTGGTCGAGTGCTCCGCCAAGAAGAAGC
AGAACCTGCAGCAGGTCTTCGAGGAGGCGGTTAGAGCCGTGGAGAGGAAA
CCAAAGACGACGTCCAAGCAATCGTGCAAAATACTGTGAACTATGTGTAT
GCCTAATTTTAAATATTGTTATTATGCGTAATGTATTATGCTACTAATTC
GCCTGACTATTTGTGCTTCGTTTTCGCAAAAGGGAAAAAAACTGTGTAGA
AAATTTAAAGTTAAGTTTGTATAATTAAGTGCCACTTGTGTGAATCCTTA
TGTTATATATGCAGCCAGAAGGCATTAATTGTAAAAAGATAAATAAAAAC
AGCACAAAATGAAAATGATATACACTTATACATATTAAAATATAATTTAA
ATCTGATATGTCCAGCAATTAGCCCCATGTATATTTCAATAAAACCCTAG
TCATTAAAAAAAAAAAAAAAAAA

MIP16962.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:42
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL.a 1097 RhoL.a 1..1092 116..1207 5460 100 Plus
RhoL-RA 1226 RhoL-RA 291..1221 277..1207 4655 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:23:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5322949..5323423 1205..731 2360 99.8 Minus
chr3R 27901430 chr3R 5323728..5324011 562..278 1360 99.3 Minus
chr3R 27901430 chr3R 5324080..5324356 277..1 1355 99.3 Minus
chr3R 27901430 chr3R 5323479..5323650 734..563 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:21:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9497099..9497575 1207..731 2385 100 Minus
3R 32079331 3R 9497880..9498164 562..278 1425 100 Minus
3R 32079331 3R 9498233..9498509 277..1 1385 100 Minus
3R 32079331 3R 9497631..9497802 734..563 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9237930..9238406 1207..731 2385 100 Minus
3R 31820162 3R 9238711..9238995 562..278 1425 100 Minus
3R 31820162 3R 9239064..9239340 277..1 1385 100 Minus
3R 31820162 3R 9238462..9238633 734..563 860 100 Minus
Blast to na_te.dros performed 2019-03-16 18:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 1231..1275 1038..994 116 78.3 Minus

MIP16962.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:24:15 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5323728..5324011 278..562 99 <- Minus
chr3R 5324080..5324356 1..277 99   Minus
chr3R 5322949..5323420 734..1205 95 <- Minus
chr3R 5323480..5323650 563..733 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 19:07:14 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 317..889 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:14:45 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 1..573 317..889 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:32 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 1..645 245..889 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:21 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 1..645 245..889 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 19:07:13 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 203..1037 277..1111 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:14:44 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RA 203..1037 277..1111 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:32 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 1..1205 1..1205 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:21 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
RhoL-RB 1..1205 1..1205 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:24:15 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497101..9497572 734..1205 100 <- Minus
3R 9497632..9497802 563..733 100 <- Minus
3R 9497880..9498164 278..562 100 <- Minus
3R 9498233..9498509 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:24:15 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497101..9497572 734..1205 100 <- Minus
3R 9497632..9497802 563..733 100 <- Minus
3R 9497880..9498164 278..562 100 <- Minus
3R 9498233..9498509 1..277 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:24:15 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9497101..9497572 734..1205 100 <- Minus
3R 9497632..9497802 563..733 100 <- Minus
3R 9497880..9498164 278..562 100 <- Minus
3R 9498233..9498509 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:32 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5322823..5323294 734..1205 100 <- Minus
arm_3R 5323354..5323524 563..733 100 <- Minus
arm_3R 5323602..5323886 278..562 100 <- Minus
arm_3R 5323955..5324231 1..277 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:05:01 Download gff for MIP16962.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9237932..9238403 734..1205 100 <- Minus
3R 9238463..9238633 563..733 100 <- Minus
3R 9238711..9238995 278..562 100 <- Minus
3R 9239064..9239340 1..277 100   Minus

MIP16962.pep Sequence

Translation from 244 to 888

> MIP16962.pep
MKVWVRQDKHTFLLNKDERGKKPGMTANITKSPRPLKITIVGDGMVGKTC
MLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR
PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLD
LRIPNSEKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVE
RKPKTTSKQSCKIL*

MIP16962.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 20:59:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16059-PA 189 GF16059-PA 1..189 25..214 869 84.3 Plus
Dana\GF20423-PA 191 GF20423-PA 4..191 36..214 522 51.1 Plus
Dana\GF23788-PA 192 GF23788-PA 4..176 36..199 521 55.5 Plus
Dana\GF10067-PA 192 GF10067-PA 4..192 36..214 519 52.9 Plus
Dana\GF16294-PA 195 GF16294-PA 5..195 34..214 517 51.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17369-PA 190 GG17369-PA 1..190 25..214 989 94.7 Plus
Dere\GG19248-PA 191 GG19248-PA 4..191 36..214 523 51.1 Plus
Dere\GG14611-PA 192 GG14611-PA 4..192 36..214 521 52.9 Plus
Dere\GG14963-PA 192 GG14963-PA 4..192 36..214 521 52.6 Plus
Dere\GG11563-PA 195 GG11563-PA 5..195 34..214 518 51.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 20:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19398-PA 185 GH19398-PA 1..185 29..214 852 83.9 Plus
Dgri\GH16613-PA 192 GH16613-PA 4..192 36..214 532 53.4 Plus
Dgri\GH19274-PA 195 GH19274-PA 5..195 34..214 529 52.4 Plus
Dgri\GH16006-PA 192 GH16006-PA 4..192 36..214 520 52.9 Plus
Dgri\GH12491-PA 191 GH12491-PA 4..191 36..214 519 50 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:27
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PB 214 CG9366-PB 1..214 1..214 1140 100 Plus
RhoL-PA 190 CG9366-PA 1..190 25..214 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 36..214 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 36..214 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 36..214 516 51.6 Plus
Rac1-PB 192 CG2248-PB 4..192 36..214 506 52.9 Plus
Rac1-PA 192 CG2248-PA 4..192 36..214 506 52.9 Plus
Mtl-PC 195 CG5588-PC 5..195 34..214 505 52.4 Plus
Mtl-PA 195 CG5588-PA 5..195 34..214 505 52.4 Plus
Mtl-PB 195 CG5588-PB 5..195 34..214 505 52.4 Plus
Rac2-PB 192 CG8556-PB 4..176 36..199 502 55.5 Plus
Rac2-PA 192 CG8556-PA 4..176 36..199 502 55.5 Plus
Rho1-PA 192 CG8416-PA 7..187 37..205 480 50.3 Plus
Rho1-PG 192 CG8416-PG 7..187 37..205 480 50.3 Plus
Rho1-PF 192 CG8416-PF 7..187 37..205 480 50.3 Plus
Rho1-PD 192 CG8416-PD 7..187 37..205 480 50.3 Plus
Rho1-PC 192 CG8416-PC 7..187 37..205 480 50.3 Plus
Rho1-PB 192 CG8416-PB 7..187 37..205 480 50.3 Plus
RhoU-PC 582 CG34104-PC 379..559 21..196 262 33.5 Plus
RhoU-PB 582 CG34104-PB 379..559 21..196 262 33.5 Plus
Rap1-PC 184 CG1956-PC 2..184 34..214 224 31.6 Plus
Rap1-PB 184 CG1956-PB 2..184 34..214 224 31.6 Plus
Rap1-PA 184 CG1956-PA 2..184 34..214 224 31.6 Plus
Rab39-PB 218 CG12156-PB 11..175 37..199 220 36.1 Plus
Rab39-PA 218 CG12156-PA 11..175 37..199 220 36.1 Plus
Rala-PB 197 CG2849-PB 1..177 25..204 218 31.5 Plus
Rala-PC 201 CG2849-PC 1..181 25..208 217 31.4 Plus
Rala-PA 201 CG2849-PA 1..181 25..208 217 31.4 Plus
Rab19-PB 219 CG7062-PP3-RB 23..187 37..202 216 32.5 Plus
Rab19-PA 219 CG7062-PA 23..187 37..202 216 32.5 Plus
Rab6-PB 208 CG6601-PB 11..184 34..210 214 31.3 Plus
Rab6-PA 208 CG6601-PA 11..184 34..210 214 31.3 Plus
Ras85D-PA 189 CG9375-PA 5..177 37..213 213 29.6 Plus
Rab21-PC 222 CG17515-PC 15..169 37..193 209 32.9 Plus
Rab21-PD 222 CG17515-PD 15..169 37..193 209 32.9 Plus
Ric-PB 264 CG8418-PB 52..223 28..202 209 29.9 Plus
Ric-PA 264 CG8418-PA 52..223 28..202 209 29.9 Plus
Ras64B-PA 192 CG1167-PA 7..168 37..201 208 30.5 Plus
Rab11-PA 214 CG5771-PA 13..174 37..201 208 34.1 Plus
Rab11-PB 214 CG5771-PB 13..174 37..201 208 34.1 Plus
Rab18-PA 197 CG3129-PA 4..165 34..199 206 30.2 Plus
Rab10-PA 204 CG17060-PA 11..181 37..212 206 29.2 Plus
Rheb-PB 182 CG1081-PB 8..177 38..210 205 32.6 Plus
Rheb-PA 182 CG1081-PA 8..177 38..210 205 32.6 Plus
Rab9Fb-PA 214 CG32670-PA 9..161 37..192 205 36.1 Plus
Rab26-PE 410 CG34410-PE 214..378 37..202 205 30.8 Plus
Rab35-PB 201 CG9575-PB 10..182 37..212 200 30.9 Plus
Rab35-PD 201 CG9575-PD 10..182 37..212 200 30.9 Plus
Rab35-PA 201 CG9575-PA 10..182 37..212 200 30.9 Plus
Rab3-PB 220 CG7576-PB 23..179 37..196 200 30.2 Plus
Rab3-PA 220 CG7576-PA 23..179 37..196 200 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 20:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22601-PA 185 GI22601-PA 1..185 29..214 861 85.5 Plus
Dmoj\GI12458-PA 192 GI12458-PA 4..192 36..214 532 54 Plus
Dmoj\GI22015-PA 195 GI22015-PA 5..195 34..214 529 52.4 Plus
Dmoj\GI12273-PA 192 GI12273-PA 4..192 36..214 521 52.9 Plus
Dmoj\GI11109-PA 191 GI11109-PA 4..191 36..214 520 50 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 20:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22229-PA 190 GL22229-PA 1..190 25..214 912 86.8 Plus
Dper\GL13704-PA 195 GL13704-PA 5..195 34..214 529 52.4 Plus
Dper\GL24253-PA 192 GL24253-PA 4..192 36..214 526 52.6 Plus
Dper\GL18265-PA 191 GL18265-PA 4..191 36..214 523 51.1 Plus
Dper\GL20555-PA 192 GL20555-PA 7..187 37..205 492 50.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 20:59:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21734-PA 190 GA21734-PA 1..190 25..214 912 86.8 Plus
Dpse\GA18989-PA 195 GA18989-PA 5..195 34..214 529 52.4 Plus
Dpse\GA23612-PA 192 GA23612-PA 4..192 36..214 526 52.6 Plus
Dpse\GA11680-PA 191 GA11680-PA 4..191 36..214 523 51.1 Plus
Dpse\GA15321-PA 192 GA15321-PA 4..192 36..214 521 52.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26254-PA 190 GM26254-PA 1..190 25..214 1004 97.9 Plus
Dsec\GM14225-PA 192 GM14225-PA 4..192 36..214 521 52.9 Plus
Dsec\GM13759-PA 192 GM13759-PA 4..192 36..214 521 52.6 Plus
Dsec\GM16346-PA 195 GM16346-PA 5..195 34..214 519 52.4 Plus
Dsec\GM11478-PA 195 GM11478-PA 5..195 34..214 519 52.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20793-PA 190 GD20793-PA 1..190 25..214 1010 98.9 Plus
Dsim\GD17456-PA 191 GD17456-PA 4..191 36..214 523 51.1 Plus
Dsim\GD13487-PA 192 GD13487-PA 4..192 36..214 521 52.9 Plus
Dsim\GD13056-PA 192 GD13056-PA 4..192 36..214 521 52.6 Plus
Dsim\GD11158-PA 192 GD11158-PA 7..187 37..205 490 50.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 20:59:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23847-PA 185 GJ23847-PA 1..185 29..214 863 86 Plus
Dvir\GJ12360-PA 192 GJ12360-PA 4..192 36..214 529 53.4 Plus
Dvir\GJ10465-PA 195 GJ10465-PA 5..195 34..214 526 51.8 Plus
Dvir\GJ15962-PA 191 GJ15962-PA 4..191 36..214 522 50.5 Plus
Dvir\GJ13209-PA 192 GJ13209-PA 4..192 36..214 521 52.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 20:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14302-PA 189 GK14302-PA 1..189 25..214 881 83.7 Plus
Dwil\GK11760-PA 195 GK11760-PA 5..195 34..214 524 51.8 Plus
Dwil\GK20502-PA 192 GK20502-PA 4..192 36..214 520 52.9 Plus
Dwil\GK16805-PA 192 GK16805-PA 2..176 34..199 520 54.9 Plus
Dwil\GK17312-PA 191 GK17312-PA 4..191 36..214 519 50.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24773-PA 190 GE24773-PA 1..190 25..214 983 93.7 Plus
Dyak\GE15867-PA 191 GE15867-PA 4..191 36..214 523 51.1 Plus
Dyak\GE20972-PA 192 GE20972-PA 4..192 36..214 521 52.9 Plus
Dyak\GE20412-PA 192 GE20412-PA 4..192 36..214 521 52.6 Plus
Dyak\GE23748-PA 195 GE23748-PA 5..195 34..214 518 51.8 Plus

MIP16962.hyp Sequence

Translation from 244 to 888

> MIP16962.hyp
MKVWVRQDKHTFLLNKDERGKKPGMTANITKSPRPLKITIVGDGMVGKTC
MLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLR
PLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLD
LRIPNSEKFVTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAVE
RKPKTTSKQSCKIL*

MIP16962.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
RhoL-PB 214 CG9366-PB 1..214 1..214 1140 100 Plus
RhoL-PA 190 CG9366-PA 1..190 25..214 1007 100 Plus
Cdc42-PD 191 CG12530-PD 4..191 36..214 516 51.6 Plus
Cdc42-PC 191 CG12530-PC 4..191 36..214 516 51.6 Plus
Cdc42-PA 191 CG12530-PA 4..191 36..214 516 51.6 Plus