Clone MIP17104 Report

Search the DGRC for MIP17104

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:171
Well:4
Vector:pOT2|pOTB7_DraIII
Associated Gene/Transcripttau-RE
Protein status:MIP17104.pep: gold
Sequenced Size:1393

Clone Sequence Records

MIP17104.complete Sequence

1393 bp assembled on 2010-01-28

GenBank Submission: BT120280.1

> MIP17104.complete
AACAAACCGACAAGCCGACCGAGCGGGAGCTGTCTCGCTTTTTTTAAAAA
TTTGCACCAGCAAAAATCCAAATAAATTAGCAGAGTGCCAGTGAAGTAAG
TGAGCGTGAGTGCGCCAAGTCAAAATATAAATATTGTCATTTACGCCGTT
TCAAAATATATTTCCGCGAGCATTTCTCGAATCGAAAGTGAACCCAAAAT
ATATTATTCCAAGTGAAAAGGACTAGCCCAAAGATACACACACACACACA
CAGGAAAAATACCGACAGATCTGTAGTCCTTTTCGAGTTTTCCCGTGAGT
GCAACAAATACAGACACACCACACACACACTCGTTCGACTTTCAATATGG
CGGATGTCCTGGAGAAAAGCTCACTGCTGGATGCTGTGCCACCACTAGGC
GACCCCCACCCACCGCTGCCCCACCAGCAGCTGCAACAGGAAGCAGCAGC
AGCAGCAGCAGCAAATGCCGCACCACCAGCACCACCGCAGCAGCAACAAC
CACCACCCCATCAGCTGCAGCAGCAGCAGCCGCAACAACAGCAACTGCAA
CAGAAGCCAGCAAATGCGAGGGCTAATCAGGATCAAAAAGAATCGTCAGG
AAATCAAACTAATTCAGTCCTAGAGTAAGAACCATAACCTTGGCAATCGA
AATTAGGCTACAGAACTATGCAGACATTAGCCCAGGACTACGCTCCTTCC
ACGTCTGAGTCTGAATCCTTGGCTAACCTCACGTCAGTTTGGATCTCCCC
AGGTTTACTTTTATGTCTACGCATTAGAGCGCCGGAGTTTTGCGTGCTGC
CTGCTTGTAAATAAATAGACAACAATTAGGGGAACCTATGACAACAACAC
CTGGATAATGGAAAGGTGCGTGGCAAGCGGTGCAAGTTGGCTCTATGTGG
ATACAAAAATATATATGCCACCCTCCCGATTGTCGAGGGCAAAGGATTGG
GTCTGGGAATGGGAATGCACAAATGCGCGTCGAAATGCCTCCCCCGGTGG
CCATTAAATTAATCAAGTCAAATGAAATCTGCATATAAAATCAGCGTTAT
AGGCTCCCCATTCGCTCATTGTTGGCGTGTTGAATTTGCATTTTTCCCCG
GCGCCCCACTAATAAATTTGTATGTCAATAGAATATAGCCAGAATACAAG
GGGCTGCTCCACCAAAAATATATCCTGGCAGCGCTTTGAACTGCGCAAGG
ACACATTCTGTTTATGCGCCCCGAGAAGTTTACGAGCGACCACGCTCCGC
CAGACCAAGTTGGCGTATCAAAACAAATTCTAAGTATTGTAATTCGAAAT
TTTTCAAAGCAAATAAAAGCAGTCGAGTTTTAACACTCGCGCCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP17104.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
tau-RA 2392 tau-RA 186..776 1..591 2955 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:51:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 23473756..23474524 1343..589 3535 97.9 Minus
chr3R 27901430 chr3R 23479120..23479705 590..1 2795 98.6 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:21:19 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27650851..27651610 1346..587 3800 100 Minus
3R 32079331 3R 27656206..27656795 590..1 2950 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 27391682..27392441 1346..587 3800 100 Minus
3R 31820162 3R 27397037..27397626 590..1 2950 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:51:29 has no hits.

MIP17104.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:52:24 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 23473756..23474522 591..1343 97 <- Minus
chr3R 23479120..23479163 547..590 100 == Minus
chr3R 23479292..23479705 1..418 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-01-28 18:34:33 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..253 347..598 98   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:14:39 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 1..253 347..598 98   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:04:19 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RE 1..282 347..628 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:34:20 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RE 1..282 347..628 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-28 18:34:31 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 16..614 1..598 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:14:39 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RA 16..614 1..598 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:04:19 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RE 1..1343 1..1343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:34:20 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
tau-RE 1..1343 1..1343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:24 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27650854..27651606 591..1343 100 <- Minus
3R 27656206..27656795 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:24 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27650854..27651606 591..1343 100 <- Minus
3R 27656206..27656795 1..590 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:52:24 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27650854..27651606 591..1343 100 <- Minus
3R 27656206..27656795 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:04:19 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 23476576..23477328 591..1343 100 <- Minus
arm_3R 23481928..23482517 1..590 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:04:57 Download gff for MIP17104.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27391685..27392437 591..1343 100 <- Minus
3R 27397037..27397626 1..590 100   Minus

MIP17104.pep Sequence

Translation from 346 to 627

> MIP17104.pep
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKESSGNQTNSVLE*

MIP17104.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 20:58:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12102-PA 354 GG12102-PA 1..26 1..26 143 100 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
tau-PE 93 CG45110-PE 1..93 1..93 483 100 Plus
tau-PH 288 CG45110-PH 1..86 1..86 431 95.3 Plus
tau-PJ 308 CG45110-PJ 1..86 1..86 431 95.3 Plus
tau-PC 349 CG45110-PC 1..86 1..86 431 95.3 Plus
tau-PI 350 CG45110-PI 1..86 1..86 431 95.3 Plus
tau-PB 361 CG45110-PB 1..86 1..86 431 95.3 Plus
tau-PA 361 CG45110-PA 1..86 1..86 431 95.3 Plus
tau-PM 367 CG45110-PM 1..86 1..86 431 95.3 Plus
tau-PN 375 CG45110-PN 1..86 1..86 431 95.3 Plus
tau-PF 403 CG45110-PF 1..86 1..86 431 95.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 20:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16331-PA 359 GM16331-PA 1..26 1..26 143 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 20:58:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18067-PA 100 GD18067-PA 1..26 1..26 138 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 20:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10550-PA 362 GE10550-PA 1..26 1..26 143 100 Plus

MIP17104.hyp Sequence

Translation from 346 to 627

> MIP17104.hyp
MADVLEKSSLLDAVPPLGDPHPPLPHQQLQQEAAAAAAANAAPPAPPQQQ
QPPPHQLQQQQPQQQQLQQKPANARANQDQKESSGNQTNSVLE*

MIP17104.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
tau-PE 93 CG45110-PE 1..93 1..93 483 100 Plus
tau-PH 288 CG45110-PH 1..86 1..86 431 95.3 Plus
tau-PJ 308 CG45110-PJ 1..86 1..86 431 95.3 Plus
tau-PC 349 CG45110-PC 1..86 1..86 431 95.3 Plus
tau-PI 350 CG45110-PI 1..86 1..86 431 95.3 Plus