Clone MIP17341 Report

Search the DGRC for MIP17341

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:173
Well:41
Vector:pOT2
Associated Gene/TranscriptCoRest-RJ
Protein status:MIP17341.pep: gold
Sequenced Size:2314

Clone Sequence Records

MIP17341.complete Sequence

2314 bp assembled on 2010-05-13

GenBank Submission: BT124901.1

> MIP17341.complete
CACTTGGTCATGAGAAGTCGGTCAAACGTACATTCATAAGCAATTATCGC
AGAATGGATGAGATTTTCAGTTTATATTGCACAATACAGAAGAATAGGCA
AGTAATGGAGCAGCTAGACAAGGAGTGCGAAACCATCAATGTGGATGATG
TGCTTTCCAAGCCGGCGGCAGCCAACACCGAATCTGCCCAGCCACGCATC
TCTGCCCGTTGGCTGCCGGATGAGATCCAAGTGGCATTGCTCGCGATCCG
CGAGTATGGAAAAAACTTTCCTACGATTGCCAAGGTGGTGGCCACCAAAA
CGGAGGCGCACGTGCGCACCTTTTACTTAAACAATCGGCGCCGCTACAAT
CTCGACCAGATCGTAAAGGAGTACGAGGCTGGCAAGTCCGAGGAGTCGGG
CGCAGAGGAGCAGACCGAGCCTGCTGTCGACGCAGCCGCGGCTGGCGCCG
CAACAGCATCTGCGCCCAGCGCGGCTGATTCTACATCCGCCGCGAGCGCG
ACAGCAGACAGGAAACAGTCCACCGAAAACAGCAACAACGGAGTTGAGAC
CATGCAGGAATCGTTGCCCAAGAAGGAGGACCCTAAGAAGCCGGAGCTGG
CAGCGGCTGTGCTCAAGATTGGCGTGGCCGAGGCAGCAGATGCCGTGGCC
ACTGTGGCATCCAGCACAGCCTCTGGCGTCATCGGTGCCGCCACCTCCGC
CAGCAAGCCCAGCACCAGTGCTACAATCACCATTATAGATGAGTCTGACA
CGGCCACGAACTCGAGCAGCGACGTTGTCACCACTGGACTTGCCACATCC
ACCGGCTCGTCCGCACTGTCCAGCACAACTAGTGCGCCCGCATCCAAAAC
GCAGACCAGCAGCGAGGAGTTGTCCGCTCAGAAATCCAATCCCGCGAGCG
GGATCGCAGCCATAGGTGCTGCAACGGGCGGTGGCCAGACTGCCAACAGC
TCTGGCAGCAAGCGGGATAGCTCTGTATTGCCCGTCGCCGAGCAGCCGCC
GGCGAAGAAAATCGCGCTCAGCACCGGAGGCGGAAGCAGCGTCGCAGAGT
TCCTGGCCAACTGAGGAGCGACGTGTTCACTCGCGATATATATGCACGCA
TAGATATATACCGATACATAACATAGATTGATGTTTTGGGGGACGACGTC
CAAGAACTGTGCAGCCGGCCATGCGGTTGATCATCGGATTAGTTATTTTT
TTTTTATTCTCTTAATTGTCTTTAAACTTGGGACGCATTTATCGTAAAAA
AGAAAGCATCACGGCTTTATCTAGGCTTGTAGAGATTAGTTCGTTTGTAT
TTGAGGTAACCTTGAGACAGTTCGATTACACATAACACACCTCCACACAC
GACCCCGGGGATCGTAAATACATAAGCTCTGCAACTCACGTACGTAATCT
TTGAATCCGTCGTAGCACGAAGAAGGAGCTCCGCCGAGCTCCGCTGAGCA
CCGCTGATTTAGGAACGATGTATCTTTCACAACAATGTATAGGTCAGAGA
TATTTTAAATGGGTTTGACGGGTAGATACTGTCCTACGGCGGATCGGTGC
CACGTAGACCACACAAAACTATGGATTAGTGCGCCCCAAAAGGGAAGAAG
TCGTCGAAATTAGCGCAGTTTATGTATGTAAAACTATGATAAATGAGAAG
AGGAGTTGTACGCGTGTAAATTAATAACCAAACTCATCATTTTTTTTTTT
TTTTCGTGACATTACCTAGCATATAACAAGTAAGTGGGGTAGCCCTGCTG
CCAACGCAGCTACCCCAGCTAATACAATCTGGAATATCACCCATCCGGCC
TCACCACTTCGGCACTTCGGCAGGGAGTTTCTGTTAGGCCAGCAGCATGG
CATGGTTATGGTGTAGCCAACACCTGGCCACCATTGTAAACATACAAGCA
AGCTAGCAAGCGGTATCCACATTGGAAAACAGTCTATAATGTAATAGGAG
GATGCATGTTGTGGCAGACGAAACTCAATCTATACTAAAACCGAAACCGA
AACCGAAAACGGAAACCTAAACCGAAAACGGAAACCTAAACCTAAAACCT
AGTATCCTAAGTATATACACTGGCCTATGAAACTCGATTTCTCTGTTCTT
AGTAAAAGAGGTCTAAATAAGAAGTTTGTACATCTCGGATTCGGATTCGA
CTTGAATGAGTCGCTGTCCAACGAGTTGTTAACAATAAATATACGATAAA
TATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

MIP17341.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:24:09
Subject Length Description Subject Range Query Range Score Percent Strand
CoRest.a 3391 CoRest.a 1264..3385 84..2205 10610 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 20:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19418484..19419706 980..2203 6025 99.7 Plus
chrX 22417052 chrX 19417705..19418412 273..980 3450 99.2 Plus
chrX 22417052 chrX 19417446..19417634 84..272 945 100 Plus
chrX 22417052 chrX 19417173..19417255 1..83 415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 20:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19529673..19530898 980..2205 6130 100 Plus
X 23542271 X 19528894..19529601 273..980 3540 100 Plus
X 23542271 X 19528635..19528823 84..272 945 100 Plus
X 23542271 X 19528362..19528444 1..83 415 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19537771..19538996 980..2205 6130 100 Plus
X 23527363 X 19536992..19537699 273..980 3540 100 Plus
X 23527363 X 19536733..19536921 84..272 945 100 Plus
X 23527363 X 19536460..19536542 1..83 415 100 Plus
3L 28103327 3L 19763701..19763744 2196..2239 190 95.4 Plus
Blast to na_te.dros performed on 2019-03-15 20:49:28 has no hits.

MIP17341.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 20:50:34 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19417173..19417255 1..83 100 -> Plus
chrX 19417446..19417634 84..272 100 -> Plus
chrX 19417705..19418412 273..980 99 -> Plus
chrX 19418485..19419490 981..1987 99 == Plus
chrX 19419546..19419706 2043..2203 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-05-13 15:17:35 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RE 782..1767 81..1064 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:36:17 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RG 1494..2475 83..1064 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:24:02 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RJ 1..1011 54..1064 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:31:24 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RJ 1..1011 54..1064 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-13 15:17:35 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RE 1238..3362 81..2203 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:36:16 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RG 1950..4070 83..2203 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:24:02 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RJ 1..2203 1..2203 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:31:24 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
CoRest-RJ 1..2203 1..2203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:50:34 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
X 19528362..19528444 1..83 100 -> Plus
X 19528635..19528823 84..272 100 -> Plus
X 19528894..19529601 273..980 100 -> Plus
X 19529674..19530896 981..2203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:50:34 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
X 19528362..19528444 1..83 100 -> Plus
X 19528635..19528823 84..272 100 -> Plus
X 19528894..19529601 273..980 100 -> Plus
X 19529674..19530896 981..2203 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 20:50:34 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
X 19528362..19528444 1..83 100 -> Plus
X 19528635..19528823 84..272 100 -> Plus
X 19528894..19529601 273..980 100 -> Plus
X 19529674..19530896 981..2203 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:24:02 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19422395..19422477 1..83 100 -> Plus
arm_X 19422668..19422856 84..272 100 -> Plus
arm_X 19422927..19423634 273..980 100 -> Plus
arm_X 19423707..19424929 981..2203 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:09:51 Download gff for MIP17341.complete
Subject Subject Range Query Range Percent Splice Strand
X 19536992..19537699 273..980 100 -> Plus
X 19537772..19538994 981..2203 100   Plus
X 19536460..19536542 1..83 100 -> Plus
X 19536733..19536921 84..272 100 -> Plus

MIP17341.pep Sequence

Translation from 2 to 1063

> MIP17341.pep
LGHEKSVKRTFISNYRRMDEIFSLYCTIQKNRQVMEQLDKECETINVDDV
LSKPAAANTESAQPRISARWLPDEIQVALLAIREYGKNFPTIAKVVATKT
EAHVRTFYLNNRRRYNLDQIVKEYEAGKSEESGAEEQTEPAVDAAAAGAA
TASAPSAADSTSAASATADRKQSTENSNNGVETMQESLPKKEDPKKPELA
AAVLKIGVAEAADAVATVASSTASGVIGAATSASKPSTSATITIIDESDT
ATNSSSDVVTTGLATSTGSSALSSTTSAPASKTQTSSEELSAQKSNPASG
IAAIGAATGGGQTANSSGSKRDSSVLPVAEQPPAKKIALSTGGGSSVAEF
LAN*

MIP17341.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20196-PA 798 GF20196-PA 471..790 17..340 710 57.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:09:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19230-PA 674 GG19230-PA 331..672 17..351 1072 76.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17657-PA 702 GH17657-PA 313..444 29..139 393 60.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
CoRest-PJ 336 CG42687-PJ 1..336 18..353 1633 100 Plus
CoRest-PI 824 CG42687-PI 488..824 17..353 1583 97.3 Plus
CoRest-PH 824 CG42687-PH 488..824 17..353 1583 97.3 Plus
CoRest-PG 824 CG42687-PG 488..824 17..353 1583 97.3 Plus
CoRest-PF 590 CG42687-PF 265..590 28..353 1578 100 Plus
CoRest-PE 588 CG33525-PE 264..588 29..353 1570 99.7 Plus
Nopp140-PF 685 CG7421-PF 97..325 121..346 155 24.4 Plus
Nopp140-PB 686 CG7421-PB 97..325 121..346 155 24.4 Plus
Nopp140-PA 720 CG7421-PA 97..325 121..346 155 24.4 Plus
Nopp140-PE 773 CG7421-PE 97..325 121..346 155 24.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:09:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16095-PA 803 GI16095-PA 468..585 20..137 354 63 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14535-PA 650 GL14535-PA 329..641 24..339 661 53.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22699-PA 650 GA22699-PA 329..641 24..339 657 53.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22965-PA 664 GM22965-PA 341..664 29..353 1271 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17446-PA 668 GD17446-PA 340..668 29..353 1288 90 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:10:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15743-PA 692 GJ15743-PA 341..467 20..139 411 66.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25834-PA 274 GK25834-PA 71..183 29..139 457 77.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15848-PA 676 GE15848-PA 342..675 29..352 1104 76.7 Plus

MIP17341.hyp Sequence

Translation from 2 to 1063

> MIP17341.hyp
LGHEKSVKRTFISNYRRMDEIFSLYCTIQKNRQVMEQLDKECETINVDDV
LSKPAAANTESAQPRISARWLPDEIQVALLAIREYGKNFPTIAKVVATKT
EAHVRTFYLNNRRRYNLDQIVKEYEAGKSEESGAEEQTEPAVDAAAAGAA
TASAPSAADSTSAASATADRKQSTENSNNGVETMQESLPKKEDPKKPELA
AAVLKIGVAEAADAVATVASSTASGVIGAATSASKPSTSATITIIDESDT
ATNSSSDVVTTGLATSTGSSALSSTTSAPASKTQTSSEELSAQKSNPASG
IAAIGAATGGGQTANSSGSKRDSSVLPVAEQPPAKKIALSTGGGSSVAEF
LAN*

MIP17341.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CoRest-PJ 336 CG42687-PJ 1..336 18..353 1633 100 Plus
CoRest-PI 824 CG42687-PI 488..824 17..353 1583 97.3 Plus
CoRest-PH 824 CG42687-PH 488..824 17..353 1583 97.3 Plus
CoRest-PF 590 CG42687-PF 265..590 28..353 1578 100 Plus
CoRest-PE 588 CG33525-PE 264..588 29..353 1570 99.7 Plus