Clone MIP18983 Report

Search the DGRC for MIP18983

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:189
Well:83
Vector:pOT2
Associated Gene/TranscriptCG43446-RA
Protein status:MIP18983.pep: gold
Sequenced Size:1469

Clone Sequence Records

MIP18983.complete Sequence

1469 bp assembled on 2010-03-23

GenBank Submission: BT122101.1

> MIP18983.complete
TTCACGCAATTATCAGTGCTCCGGAAAGATTTTTTAGACGTTACCGTTAT
TTCTTATATTTATACAATAGATCGGTTTTAAATTTATATTCGAACGCATT
TATTTGTTGTATTTTTTTCATACAAAGGCATACGATGTTGGTGTGATTAT
TGTTTGAATAAAAAGATTGTTGTACTAAAAAAAATTATTAAAGTTTTGGA
GTGTCGTGCACAGTTATCTCTTCCACTTATTGTGGACCCAACCCGCCGAC
TGGTGATATTACTCATTTGTTTGCTTGCTTTGTACACTTGCCAACATAAT
TTTGGAAATGTTGATCTGCTGTATGGAAGGGTGCGAATTCAATAATTCGA
TTTCCAATGATGAGCATGTTAGGTGCTGGTTGTGTGACGAATATGCTCAC
GCGAAGTGCGCGGGCATAACTGATAGTGTAGTGGAAATGATTGAAGGAAG
AACTGGACTCAAATGGACCTGTGAAACCTGCAGAGTTGTCAAATCTCAGA
TGGGAAGATTTATGAAGCAAACGCGTACGGAAATAACTGAACTCTTTAGG
GAAGTTCGAGCCGTCTATGAAAAGTTGGCGAAGCTAGAATCGCATATTAC
GTCTCATCCTCAAAAACCGATTTACCCTGTGGACAGTGATTCAAGTTCTA
ATCCATTACACACTTTTGAAGATACTAATGATGACAAAGAAGTTGAAGAT
GCAGAGTCATCTATTGTTCAACACAATTCTACGAATATGCAAAAAGCGAA
AATATGGCATCATAATGCGGCTCCCGTGGTACTACCTCTACATACCAATC
CGGTTATTCTTAAAGCTGTACCTCCAATGAAAGCTGTGTTCGTATCCAGA
CTCGTAACCTCAACTACTGAAGATGCCCTCAAACACTACATAGTGGCCAA
ACTCTCTTATCCCAATCCCGATGACATCATCGTCAGAAAAATATATAATA
AGCAAAGACGAAAAATTGCATCGTTTAAAGTGATGGCACCGGATCCTATA
TATTATACGATTTTAAATCCTGGATTTTGGCCTAAACATATCATTGTGCA
CGAGTTTGTCAACAAAAGCCTTCTTCAAACCAATGTAGAATTTATAAAAT
ATTGTTAATATTTCCATATGAAATTTCAGTGAAATATTAAGAAAGTAACA
CATTTCTAGAATAGGAACTGTGCAAGCATTATCAGTAATTATTAATATAA
CACTGTTCTAATCACATTTAATCACTCATTTTTTTGCCAATATTTAGGGT
ATCAATTGCTCTGTAGATACAGAAACACTTATACAATTTGATATCACTCG
AGTATAAGAATTCGGTTCACAGAAGTTTCACTTTTATGGTTTCACAATAA
AATAGCTATAAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAA

MIP18983.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 21:37:19 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16810365..16811119 1364..611 3530 98.1 Minus
chr3R 27901430 chr3R 16811194..16811798 605..1 2995 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:21:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20986501..20987262 1367..606 3810 100 Minus
3R 32079331 3R 20987332..20987936 605..1 3025 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20727332..20728093 1367..606 3810 100 Minus
3R 31820162 3R 20728163..20728767 605..1 3025 100 Minus
Blast to na_te.dros performed on 2019-03-16 12:35:56 has no hits.

MIP18983.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:36:58 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16810365..16811124 606..1364 97 <- Minus
chr3R 16811194..16811798 1..605 99   Minus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:03:32 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
CG43446-RA 1..801 308..1108 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:11 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
CG43446-RA 1..801 308..1108 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:03:32 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
CG43446-RA 1..1364 1..1364 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:11 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
CG43446-RA 1..1364 1..1364 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:58 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20986504..20987262 606..1364 100 <- Minus
3R 20987332..20987936 1..605 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:58 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20986504..20987262 606..1364 100 <- Minus
3R 20987332..20987936 1..605 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:36:58 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20986504..20987262 606..1364 100 <- Minus
3R 20987332..20987936 1..605 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:03:32 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16812226..16812984 606..1364 100 <- Minus
arm_3R 16813054..16813658 1..605 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:33:52 Download gff for MIP18983.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20727335..20728093 606..1364 100 <- Minus
3R 20728163..20728767 1..605 100   Minus

MIP18983.pep Sequence

Translation from 307 to 1107

> MIP18983.pep
MLICCMEGCEFNNSISNDEHVRCWLCDEYAHAKCAGITDSVVEMIEGRTG
LKWTCETCRVVKSQMGRFMKQTRTEITELFREVRAVYEKLAKLESHITSH
PQKPIYPVDSDSSSNPLHTFEDTNDDKEVEDAESSIVQHNSTNMQKAKIW
HHNAAPVVLPLHTNPVILKAVPPMKAVFVSRLVTSTTEDALKHYIVAKLS
YPNPDDIIVRKIYNKQRRKIASFKVMAPDPIYYTILNPGFWPKHIIVHEF
VNKSLLQTNVEFIKYC*

MIP18983.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG43446-PA 266 CG43446-PA 1..266 1..266 1424 100 Plus
CG43446-PB 267 CG43446-PB 1..267 1..266 1403 99.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15316-PA 424 GL15316-PA 5..101 2..99 198 37.4 Plus
Dper\GL14789-PA 394 GL14789-PA 236..332 2..99 173 35.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24018-PA 908 GA24018-PA 5..101 2..99 186 36.4 Plus

MIP18983.hyp Sequence

Translation from 307 to 1107

> MIP18983.hyp
MLICCMEGCEFNNSISNDEHVRCWLCDEYAHAKCAGITDSVVEMIEGRTG
LKWTCETCRVVKSQMGRFMKQTRTEITELFREVRAVYEKLAKLESHITSH
PQKPIYPVDSDSSSNPLHTFEDTNDDKEVEDAESSIVQHNSTNMQKAKIW
HHNAAPVVLPLHTNPVILKAVPPMKAVFVSRLVTSTTEDALKHYIVAKLS
YPNPDDIIVRKIYNKQRRKIASFKVMAPDPIYYTILNPGFWPKHIIVHEF
VNKSLLQTNVEFIKYC*

MIP18983.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:05:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG43446-PA 266 CG43446-PA 1..266 1..266 1424 100 Plus
CG43446-PB 267 CG43446-PB 1..267 1..266 1403 99.3 Plus