Clone MIP19690 Report

Search the DGRC for MIP19690

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:196
Well:90
Vector:pOT2
Associated Gene/TranscriptCG8786-RF
Protein status:MIP19690.pep: gold
Sequenced Size:1364

Clone Sequence Records

MIP19690.complete Sequence

1364 bp assembled on 2010-03-23

GenBank Submission: BT122073.1

> MIP19690.complete
GTCATACTCAGGCAGCAACAATTTTTTGTTTCAAGTTTGTTTGTGAAAAT
TTAAAACTCAACGTCGACGACAACAGCTCGATTTCCCCGCTGTTGACGAA
ATCGATCCAATCCGACCATGTCGCAACAGCGCTCCACAGAGCAGATTGCA
GCTAGCAACAACAACACCAGCGATGTAATAGCGCTGGACGACGACGAGGA
TACGGATGTGCAATTCGTTGCAGCTCTGCGTCCCACCGCACCAGTCATCG
ATCTTTGCGTCTCGCCCTCCACTTCTGCTGCTGCTGCTGCGGCGGCGGCA
GCTGCAGCCCACTCAGGAGGCGGAAGTGGCGAGGATCCGGCGGTTGGATC
CGCATCTGGAGCTGCTGCTTCGGATACCGATTCACTTGCTTCTTCGCCTG
ACGAAGGAGCGTTAGCCACCGGTGTGGATGCAGCGGCAGCCGTTTCTGGC
GAAGATTCCCCCTCTGCAGCGGCCGCTGCCTTGGAGTGTCCCATCTGTTT
GCAAACCTGCATCCACCCAGCTCGTCTCCCCTGTGGCCACATCTTCTGCT
TTTTGTGCGTGAAGGGTGTTGCTTATAAGAACCGCCGTTGTGCTATGTGC
CGTCGCGAGATTCCCGCCGAGTTCCTGGACCATCCCCAGCTGGTGAATGG
CATTGAGGACATCTGCACCACTCGCGCGACCGAGGACGGCTTCCAGTGGT
ATTACGAGGGAAGAAACGGGGGCTGGTGGGCGTACGATTCTCGGACCAAT
GCAGACATCGAGATCGCCTATGCTGGCTTTGAGATATTCAAGGCAGATAA
CCCTGAGCTTGCTCCTTTATTTGATCGGGACTGTCCAAACCCTATCAATC
ACTATTGTCTGTGTGACGAAAATATTATTTTCTACAATGCCGATTCAGAA
ATTGTTATATACCCAACCATTATTCGTTCATCTGGTCAGGGCGCTCCAGC
CTCTTCCGAAAACAATGGTCGGGACTCGCCAGCCCTATCATTGGACGATA
TTATGAGCTTAGACCCCGATGAGCTGAACATCATTAGGCCGCATCCATGC
ACACTGCCCATTCAGATCTGCGGGCGTATGTACATCATCGACTTTTTGCA
GAATTTACAGTATCTCCGCTTGACTCCAGAAAAGAGCCGCAATATAATGC
GCTGCAAGAGCACGGATGACGTTTCTGGCGGAATGAGAGGAGTTGCTGGA
CTGAGCCAGAACTAAAAATACAAGAACACTTTAATAATTAATGACAACAC
CTAACTCCTTACCCATTCCGCACATCCATTTCCGTAATAACAAACTGTAA
TTAAATGACAAAATCGTCGAAAAGAATTGGACCGATTCCATTCCAAACAA
AAAAAAAAAAAAAA

MIP19690.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8786-RE 2321 CG8786-RE 31..1107 1..1077 5385 100 Plus
CG8786-RD 1602 CG8786-RD 31..749 1..719 3595 100 Plus
CG8786-RB 2046 CG8786-RB 68..786 1..719 3595 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19629704..19630327 1345..718 3030 99.2 Minus
chr3L 24539361 chr3L 19631692..19632124 433..1 2135 99.5 Minus
chr3L 24539361 chr3L 19630406..19630562 719..563 770 99.4 Minus
chr3L 24539361 chr3L 19631233..19631366 565..432 670 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:22:14 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19640358..19640985 1345..718 3125 99.8 Minus
3L 28110227 3L 19642352..19642784 433..1 2165 100 Minus
3L 28110227 3L 19641064..19641220 719..563 785 100 Minus
3L 28110227 3L 19641893..19642026 565..432 670 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:53:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19633458..19634085 1345..718 3125 99.8 Minus
3L 28103327 3L 19635452..19635884 433..1 2165 100 Minus
3L 28103327 3L 19634164..19634320 719..563 785 100 Minus
3L 28103327 3L 19634993..19635126 565..432 670 100 Minus
Blast to na_te.dros performed 2019-03-16 17:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6941 478..250 118 51.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2467 441..276 112 53 Minus

MIP19690.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:07 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19629701..19630326 719..1348 98 <- Minus
chr3L 19630407..19630560 565..718 99 <- Minus
chr3L 19631234..19631364 434..564 100 <- Minus
chr3L 19631692..19632124 1..433 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-03-23 11:19:07 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RE 1..962 118..1080 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:56:51 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RE 1..962 118..1080 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:21 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RF 1..1098 118..1215 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:36 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RF 1..1098 118..1215 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-23 11:19:05 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RE 31..1109 1..1080 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:56:51 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RE 31..1109 1..1080 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:21 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RF 33..1376 1..1344 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:36 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
CG8786-RF 33..1376 1..1344 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:07 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19640355..19640984 719..1348 99 <- Minus
3L 19641065..19641218 565..718 100 <- Minus
3L 19641894..19642024 434..564 100 <- Minus
3L 19642352..19642784 1..433 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:07 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19640355..19640984 719..1348 99 <- Minus
3L 19641065..19641218 565..718 100 <- Minus
3L 19641894..19642024 434..564 100 <- Minus
3L 19642352..19642784 1..433 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:07 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19640355..19640984 719..1348 99 <- Minus
3L 19641065..19641218 565..718 100 <- Minus
3L 19641894..19642024 434..564 100 <- Minus
3L 19642352..19642784 1..433 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:21 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19633455..19634084 719..1348 99 <- Minus
arm_3L 19634165..19634318 565..718 100 <- Minus
arm_3L 19634994..19635124 434..564 100 <- Minus
arm_3L 19635452..19635884 1..433 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:33:35 Download gff for MIP19690.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19634994..19635124 434..564 100 <- Minus
3L 19633455..19634084 719..1348 99 <- Minus
3L 19634165..19634318 565..718 100 <- Minus
3L 19635452..19635884 1..433 100   Minus

MIP19690.pep Sequence

Translation from 117 to 1214

> MIP19690.pep
MSQQRSTEQIAASNNNTSDVIALDDDEDTDVQFVAALRPTAPVIDLCVSP
STSAAAAAAAAAAAHSGGGSGEDPAVGSASGAAASDTDSLASSPDEGALA
TGVDAAAAVSGEDSPSAAAAALECPICLQTCIHPARLPCGHIFCFLCVKG
VAYKNRRCAMCRREIPAEFLDHPQLVNGIEDICTTRATEDGFQWYYEGRN
GGWWAYDSRTNADIEIAYAGFEIFKADNPELAPLFDRDCPNPINHYCLCD
ENIIFYNADSEIVIYPTIIRSSGQGAPASSENNGRDSPALSLDDIMSLDP
DELNIIRPHPCTLPIQICGRMYIIDFLQNLQYLRLTPEKSRNIMRCKSTD
DVSGGMRGVAGLSQN*

MIP19690.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10719-PA 356 GF10719-PA 1..198 1..218 625 65.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13386-PA 381 GG13386-PA 1..226 1..222 797 81.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14620-PA 401 GH14620-PA 1..289 1..362 567 44 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG8786-PF 365 CG8786-PF 1..365 1..365 1929 100 Plus
CG8786-PB 376 CG8786-PB 1..217 1..218 1096 96.8 Plus
CG8786-PG 448 CG8786-PG 1..217 1..218 1096 96.8 Plus
CG8786-PC 448 CG8786-PC 1..217 1..218 1096 96.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:22:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13507-PA 493 GI13507-PA 16..302 6..337 595 46.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20877-PA 342 GL20877-PA 62..185 105..222 483 70.4 Plus
Dper\GL25397-PA 110 GL25397-PA 1..87 150..242 353 65.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28223-PA 342 GA28223-PA 62..185 105..222 492 71.2 Plus
Dpse\GA29174-PA 340 GA29174-PA 62..183 107..222 490 72.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17033-PA 381 GM17033-PA 1..221 1..218 871 89.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:22:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12263-PA 501 GD12263-PA 1..393 1..362 1380 75.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11868-PA 360 GJ11868-PA 1..202 1..218 594 61.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25803-PA 403 GK25803-PA 103..209 111..218 523 84.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22479-PA 497 GE22479-PA 1..390 1..362 1176 64.6 Plus
Dyak\GE14584-PA 206 GE14584-PA 1..206 160..365 816 70.9 Plus

MIP19690.hyp Sequence

Translation from 117 to 1214

> MIP19690.hyp
MSQQRSTEQIAASNNNTSDVIALDDDEDTDVQFVAALRPTAPVIDLCVSP
STSAAAAAAAAAAAHSGGGSGEDPAVGSASGAAASDTDSLASSPDEGALA
TGVDAAAAVSGEDSPSAAAAALECPICLQTCIHPARLPCGHIFCFLCVKG
VAYKNRRCAMCRREIPAEFLDHPQLVNGIEDICTTRATEDGFQWYYEGRN
GGWWAYDSRTNADIEIAYAGFEIFKADNPELAPLFDRDCPNPINHYCLCD
ENIIFYNADSEIVIYPTIIRSSGQGAPASSENNGRDSPALSLDDIMSLDP
DELNIIRPHPCTLPIQICGRMYIIDFLQNLQYLRLTPEKSRNIMRCKSTD
DVSGGMRGVAGLSQN*

MIP19690.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8786-PF 365 CG8786-PF 1..365 1..365 1929 100 Plus
CG8786-PB 376 CG8786-PB 1..217 1..218 1096 96.8 Plus
CG8786-PG 448 CG8786-PG 1..217 1..218 1096 96.8 Plus
CG8786-PC 448 CG8786-PC 1..217 1..218 1096 96.8 Plus