Clone MIP20311 Report

Search the DGRC for MIP20311

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:203
Well:11
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG43406-RA
Protein status:MIP20311.pep: wuzgold
Sequenced Size:469

Clone Sequence Records

MIP20311.complete Sequence

469 bp assembled on 2010-03-28

GenBank Submission: BT122147.1

> MIP20311.complete
ATCGGATGATGAATGATAAATTCTGGCATTTCCCTGTCCACGACAAACGT
ATGCTACACGAACTGCACTTTTGCAACTAATTATGTCCGCTCATTATTAA
CCCCGCTGTCGAGTCAACAAGAGAAGTCATTCTTGACATCCCAGAAAAGG
AAAAGGGAACGGAAAAGCGAGAGGGCAGTGGAAAAAACCAAGCAAACATG
CTTTTGTCATTTGCGCAAATTAATGCACGACAGTTGGGAAAGAGTAGGGA
CGAGGAAAGCGAGGGGCTTACAAAAAGCAGATGCTGCTTATTTGGATAGC
TCTTAGGGAAGGTCAACGGTATATGGCTAGTCTCGTCCTTTTTTTAATTT
ATTGCCTCGGCAACACGAGGAAGCAAATCCTTGAGTCGTACCAAAATTAT
GACGTGAAAATACTTTTCTGAACTGAAAGTAAAATATTTTTCAAATATTT
AAAAAAAAAAAAAAAAAAA

MIP20311.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 21:38:03 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18250323..18250581 191..450 1250 99.6 Plus
chr2L 23010047 chr2L 18250079..18250270 1..192 960 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:22:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:02:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18251651..18251916 191..457 1270 99.3 Plus
2L 23513712 2L 18251407..18251598 1..192 960 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18251651..18251916 191..457 1280 99.2 Plus
2L 23513712 2L 18251407..18251598 1..192 960 100 Plus
Blast to na_te.dros performed 2019-03-16 22:02:27
Subject Length Description Subject Range Query Range Score Percent Strand
Juan 4236 Juan JUAN 4236bp 402..456 396..448 108 69.1 Plus

MIP20311.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:03:24 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18250325..18250581 193..450 99   Plus
chr2L 18250079..18250270 1..192 100 -> Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:06:58 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
CG43406-RA 1..294 13..306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:06:58 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
CG43406-RA 27..475 1..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:24 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18251407..18251598 1..192 100 -> Plus
2L 18251653..18251909 193..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:24 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18251407..18251598 1..192 100 -> Plus
2L 18251653..18251909 193..450 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:03:24 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18251407..18251598 1..192 100 -> Plus
2L 18251653..18251909 193..450 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:06:58 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18251407..18251598 1..192 100 -> Plus
arm_2L 18251653..18251909 193..450 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:35:00 Download gff for MIP20311.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18251653..18251909 193..450 99   Plus
2L 18251407..18251598 1..192 100 -> Plus

MIP20311.pep Sequence

Translation from 12 to 305

> MIP20311.pep
MINSGISLSTTNVCYTNCTFATNYVRSLLTPLSSQQEKSFLTSQKRKRER
KSERAVEKTKQTCFCHLRKLMHDSWERVGTRKARGLQKADAAYLDSS*
Sequence MIP20311.pep has no blast hits.

MIP20311.hyp Sequence

Translation from 12 to 305

> MIP20311.hyp
MINSGISLSTTNVCYTNCTFATNYVRSLLTPLSSQQEKSFLTSQKRKRER
KSERAVEKTKQTCFCHLRKLMHDSWERVGTRKARGLQKADAAYLDSS*
Sequence MIP20311.hyp has no blast hits.