Clone MIP20408 Report

Search the DGRC for MIP20408

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:204
Well:8
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG43253-RA
Protein status:MIP20408.pep: gold
Sequenced Size:846

Clone Sequence Records

MIP20408.complete Sequence

846 bp assembled on 2010-03-28

GenBank Submission: BT122140.1

> MIP20408.complete
AAAACCACTGGCTTGCTTTTAAATATAAATCAAAATTCTTAAGTTTGTTT
CAAATGCATCAACAGCAAGCAGAAGTGATTAAAAAATCACCGTGAAGTCA
ATTTAATGAAAATTACATAGTCTTTATAAAGATGTTGTTGATACTCTTGG
TTGCCTGCTTTTACCTCGCCTTCGGATTTCTTATTTTATATTTGATATGC
CTTCTTTTAGTAATATGCTTGTCTATTTTCTTTGACTACGATCCGATAAA
CAGTTAATGCATCTTTATTTGGATAGAAAATAAACATGCTTGGGATTGCG
AAAATCAAAGAAATCATAAGGCGCGGCAAGTCAAGTGCGTTTCGAGAAAT
ATCATTAATTTCCCGTTTAGCCGGCAACAACCCCGAAAAGCTTCCAGACA
GGAGACCAAAACCAACACAATGCCCAGCTCCATGATGTCCGTGATGATGA
TTACGCTGCACTCGCTGAGCCTGAGCTGGATTTTTAATTGGCCTAGTCCA
TTGAGTGCTCCATTTGCCGGTTTCCCATCTGTGTACTCATCAGATATCTG
CTGGCCAAGGTGCCAGTGGGGTGAATTGCAGGGCAGATGCCCAACGATAA
TGGACAGCTGAGATTTGCGCTCGGATAGCAGTAACTGTGAAAACAAGTTT
GAATTGCAAATGAGTGAATTGCGAATGAACTGGGAATTTTCAAATTGCTA
TTTGAAGAACAATGGGCTTGATATCTTGGTGACCAAGCCTGGAATCGATG
AATTCACATTGAAATTAAAATAAAGGTTTTATATCAGTATTGAAAGTAAA
TTAAAAAATAAAATGTTTTGAAATTGCCAAAAAAAAAAAAAAAAAA

MIP20408.complete Blast Records

Blast to MB8.fasta performed on 2010-07-15 21:37:58 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:58:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 18070807..18071234 828..403 2075 99.5 Minus
chr3L 24539361 chr3L 18074705..18074998 294..1 1470 100 Minus
chr3L 24539361 chr3L 18074505..18074615 404..294 555 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:23:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18081121..18081546 828..403 2130 100 Minus
3L 28110227 3L 18085017..18085310 294..1 1470 100 Minus
3L 28110227 3L 18084817..18084927 404..294 555 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 18074221..18074646 828..403 2130 100 Minus
3L 28103327 3L 18078117..18078410 294..1 1470 100 Minus
3L 28103327 3L 18077917..18078027 404..294 555 100 Minus
Blast to na_te.dros performed 2019-03-16 10:58:28
Subject Length Description Subject Range Query Range Score Percent Strand
accord2 7650 accord2 QBERT 7650bp 6208..6260 183..237 108 69.1 Plus

MIP20408.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:59:16 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 18074705..18074998 1..294 100   Minus
chr3L 18070807..18071232 405..828 99 <- Minus
chr3L 18074505..18074614 295..404 100 <- Minus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:14:32 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
CG43253-RA 1..192 420..611 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:14:32 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
CG43253-RA 1..828 1..828 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:16 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18081121..18081544 405..828 100 <- Minus
3L 18084817..18084926 295..404 100 <- Minus
3L 18085017..18085310 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:16 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18081121..18081544 405..828 100 <- Minus
3L 18084817..18084926 295..404 100 <- Minus
3L 18085017..18085310 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:16 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18081121..18081544 405..828 100 <- Minus
3L 18084817..18084926 295..404 100 <- Minus
3L 18085017..18085310 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:14:32 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18078117..18078410 1..294 100   Minus
arm_3L 18074221..18074644 405..828 100 <- Minus
arm_3L 18077917..18078026 295..404 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:34:56 Download gff for MIP20408.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18074221..18074644 405..828 100 <- Minus
3L 18077917..18078026 295..404 100 <- Minus
3L 18078117..18078410 1..294 100   Minus

MIP20408.pep Sequence

Translation from 419 to 610

> MIP20408.pep
MPSSMMSVMMITLHSLSLSWIFNWPSPLSAPFAGFPSVYSSDICWPRCQW
GELQGRCPTIMDS*
Sequence MIP20408.pep has no blast hits.

MIP20408.hyp Sequence

Translation from 419 to 610

> MIP20408.hyp
MPSSMMSVMMITLHSLSLSWIFNWPSPLSAPFAGFPSVYSSDICWPRCQW
GELQGRCPTIMDS*
Sequence MIP20408.hyp has no blast hits.