Clone Sequence Records
MIP20408.complete Sequence
846 bp assembled on 2010-03-28
GenBank Submission: BT122140.1
> MIP20408.complete
AAAACCACTGGCTTGCTTTTAAATATAAATCAAAATTCTTAAGTTTGTTT
CAAATGCATCAACAGCAAGCAGAAGTGATTAAAAAATCACCGTGAAGTCA
ATTTAATGAAAATTACATAGTCTTTATAAAGATGTTGTTGATACTCTTGG
TTGCCTGCTTTTACCTCGCCTTCGGATTTCTTATTTTATATTTGATATGC
CTTCTTTTAGTAATATGCTTGTCTATTTTCTTTGACTACGATCCGATAAA
CAGTTAATGCATCTTTATTTGGATAGAAAATAAACATGCTTGGGATTGCG
AAAATCAAAGAAATCATAAGGCGCGGCAAGTCAAGTGCGTTTCGAGAAAT
ATCATTAATTTCCCGTTTAGCCGGCAACAACCCCGAAAAGCTTCCAGACA
GGAGACCAAAACCAACACAATGCCCAGCTCCATGATGTCCGTGATGATGA
TTACGCTGCACTCGCTGAGCCTGAGCTGGATTTTTAATTGGCCTAGTCCA
TTGAGTGCTCCATTTGCCGGTTTCCCATCTGTGTACTCATCAGATATCTG
CTGGCCAAGGTGCCAGTGGGGTGAATTGCAGGGCAGATGCCCAACGATAA
TGGACAGCTGAGATTTGCGCTCGGATAGCAGTAACTGTGAAAACAAGTTT
GAATTGCAAATGAGTGAATTGCGAATGAACTGGGAATTTTCAAATTGCTA
TTTGAAGAACAATGGGCTTGATATCTTGGTGACCAAGCCTGGAATCGATG
AATTCACATTGAAATTAAAATAAAGGTTTTATATCAGTATTGAAAGTAAA
TTAAAAAATAAAATGTTTTGAAATTGCCAAAAAAAAAAAAAAAAAA
MIP20408.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 21:37:58 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:58:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 18070807..18071234 | 828..403 | 2075 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 18074705..18074998 | 294..1 | 1470 | 100 | Minus |
chr3L | 24539361 | chr3L | 18074505..18074615 | 404..294 | 555 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:23:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18081121..18081546 | 828..403 | 2130 | 100 | Minus |
3L | 28110227 | 3L | 18085017..18085310 | 294..1 | 1470 | 100 | Minus |
3L | 28110227 | 3L | 18084817..18084927 | 404..294 | 555 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 18074221..18074646 | 828..403 | 2130 | 100 | Minus |
3L | 28103327 | 3L | 18078117..18078410 | 294..1 | 1470 | 100 | Minus |
3L | 28103327 | 3L | 18077917..18078027 | 404..294 | 555 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 10:58:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 6208..6260 | 183..237 | 108 | 69.1 | Plus |
MIP20408.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:59:16 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 18074705..18074998 | 1..294 | 100 | | Minus |
chr3L | 18070807..18071232 | 405..828 | 99 | <- | Minus |
chr3L | 18074505..18074614 | 295..404 | 100 | <- | Minus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:14:32 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43253-RA | 1..192 | 420..611 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:14:32 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43253-RA | 1..828 | 1..828 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:16 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18081121..18081544 | 405..828 | 100 | <- | Minus |
3L | 18084817..18084926 | 295..404 | 100 | <- | Minus |
3L | 18085017..18085310 | 1..294 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:16 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18081121..18081544 | 405..828 | 100 | <- | Minus |
3L | 18084817..18084926 | 295..404 | 100 | <- | Minus |
3L | 18085017..18085310 | 1..294 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:59:16 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18081121..18081544 | 405..828 | 100 | <- | Minus |
3L | 18084817..18084926 | 295..404 | 100 | <- | Minus |
3L | 18085017..18085310 | 1..294 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:14:32 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18078117..18078410 | 1..294 | 100 | | Minus |
arm_3L | 18074221..18074644 | 405..828 | 100 | <- | Minus |
arm_3L | 18077917..18078026 | 295..404 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:34:56 Download gff for
MIP20408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18074221..18074644 | 405..828 | 100 | <- | Minus |
3L | 18077917..18078026 | 295..404 | 100 | <- | Minus |
3L | 18078117..18078410 | 1..294 | 100 | | Minus |
MIP20408.pep Sequence
Translation from 419 to 610
> MIP20408.pep
MPSSMMSVMMITLHSLSLSWIFNWPSPLSAPFAGFPSVYSSDICWPRCQW
GELQGRCPTIMDS*
Sequence MIP20408.pep has no blast hits.
MIP20408.hyp Sequence
Translation from 419 to 610
> MIP20408.hyp
MPSSMMSVMMITLHSLSLSWIFNWPSPLSAPFAGFPSVYSSDICWPRCQW
GELQGRCPTIMDS*
Sequence MIP20408.hyp has no blast hits.