MIP20553.complete Sequence
1287 bp assembled on 2010-04-06
GenBank Submission: BT122197.1
> MIP20553.complete
CAGAAAGTTTCGCGAACGTTGCCAAGCGATTAAACCGATCCGAACCGCCC
GCGTACATAATATAATATTCGTGAAAATGAGTTCCAAGTCCCTTTTCGAC
AGCGAGGAGGATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGA
ATCGCCCTTCATGCTTGTGGGTGAGTTTTGCCAATTTCCGGACAGCGAAA
GTTTTGCCGCCGTGACGTCACATGGAAACTTTTGGCTCAGCAGCCAGCTA
GATACGCACATATCTACACACATTTACGAATGTACATTGCGTGTGCGGCG
GGGAAGTCGGCTAATCTTGACCTTGGCCATGAGTTTAACGTCAATTTGGG
GTCACTTTTTGATGTCACTGTGTGACATAACGGTGAATGCAGTATGATCC
GTAACTCGTTCTGGAGAGCGAATGATGTAACAGGAGTATTTCGAAATTCA
CGCAAATCGCAAGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGC
GTACAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGC
AGCTGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGA
CTGGCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGA
AAAGTAATGGACAGTTCCTACTTAGTTAATACTAGCTGTAGCTTAAGTTG
TTTTAACCGCGTACAGAAAGAATCCTGAATCCCAATCCCAATTGAATCCC
CAATACAATTGTTTCATATTTATGTCTATTTCCAAATGCTTTCGGTTTCC
ACATGTCTATTAACATTCACTGAAACGCATATTCCCATATTCATGACTGT
CTATTTAGTTTTCATACGTTTTGATTTATTTATTTCCCCTATTTGATTTA
CTCTTAATTTTAGCACAAAGTCATTGACTAACTAAAGACCATCTGATTGC
TCGGCGTCCCTCTCTAAAAATCACAAGATGACATCGGCTAGATCACTTAC
ACATAAGCAATCAGACCCTCTATTTATTGCATCATCATGGTTCATACCGA
TCCACTTGGATAGAATCACTGGAGGGCAGGACTCTCGCAAGTATTCCCGA
GCGTTCAAGCCCACAACATTAGATACAGTTTTGTAAACCTGCGTAAGATT
GTGATATTGTGTGTTTTAATGTACAAGTTGAACATCCAAACGAAAGCTGT
CGAAGCAGACGACAAGATGATAAATACCTCTCGCATGATATGATATACTT
AAATAAATCAATTTAGACTAAAAAAAAAAAAAAAAAA
MIP20553.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 21:39:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17734-RB | 1185 | CG17734-RB | 327..1141 | 463..1277 | 4060 | 99.8 | Plus |
CG17734-RA | 992 | CG17734-RA | 585..948 | 914..1277 | 1805 | 99.7 | Plus |
CG17734-RA | 992 | CG17734-RA | 394..584 | 463..653 | 955 | 100 | Plus |
CG17734-RB | 1185 | CG17734-RB | 158..329 | 1..172 | 860 | 100 | Plus |
CG17734-RA | 992 | CG17734-RA | 225..396 | 1..172 | 860 | 100 | Plus |
CG11825.a | 663 | CG11825.a | 207..384 | 463..640 | 500 | 85.3 | Plus |
CG11825.a | 663 | CG11825.a | 111..209 | 74..172 | 225 | 81.8 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 7067782..7068589 | 1269..462 | 4010 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 7069062..7069525 | 464..1 | 2200 | 98.3 | Minus |
chr2R | 21145070 | chr2R | 6308193..6308370 | 640..463 | 500 | 85.4 | Minus |
chr2R | 21145070 | chr2R | 6308368..6308466 | 172..74 | 225 | 81.8 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:23:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11242200..11243015 | 1277..462 | 4065 | 99.9 | Minus |
3R | 32079331 | 3R | 11243488..11243951 | 464..1 | 2320 | 100 | Minus |
2R | 25286936 | 2R | 10420733..10420910 | 640..463 | 500 | 85.4 | Minus |
2R | 25286936 | 2R | 10420908..10421006 | 172..74 | 225 | 81.8 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 10983031..10983846 | 1277..462 | 4065 | 99.8 | Minus |
3R | 31820162 | 3R | 10984319..10984782 | 464..1 | 2320 | 100 | Minus |
2R | 25260384 | 2R | 10421932..10422109 | 640..463 | 500 | 85.3 | Minus |
2R | 25260384 | 2R | 10422107..10422205 | 172..74 | 225 | 81.8 | Minus |
Blast to na_te.dros performed 2019-03-16 09:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 5250..5331 | 930..848 | 124 | 62.7 | Minus |
Doc3-element | 4740 | Doc3-element DOC3 4740bp | 56..135 | 918..839 | 121 | 61.3 | Minus |
MIP20553.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:10:53 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 7067782..7068589 | 462..1269 | 99 | -> | Minus |
chr3R | 7069065..7069525 | 1..461 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2010-04-19 15:47:14 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 22:00:33 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:35:36 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17734-RC | 1..321 | 77..397 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:41 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17734-RC | 1..321 | 77..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:47:13 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17734-RB | 195..1001 | 463..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:00:33 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17734-RB | 197..1003 | 463..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:35:36 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17734-RC | 49..1317 | 1..1269 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:41 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17734-RC | 49..1317 | 1..1269 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:53 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11242208..11243013 | 464..1269 | 100 | <- | Minus |
3R | 11243489..11243951 | 1..463 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:53 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11242208..11243013 | 464..1269 | 100 | <- | Minus |
3R | 11243489..11243951 | 1..463 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:53 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11242208..11243013 | 464..1269 | 100 | <- | Minus |
3R | 11243489..11243951 | 1..463 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:35:36 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7067930..7068735 | 464..1269 | 100 | <- | Minus |
arm_3R | 7069211..7069673 | 1..463 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:38:14 Download gff for
MIP20553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10983039..10983844 | 464..1269 | 100 | <- | Minus |
3R | 10984320..10984782 | 1..463 | 100 | | Minus |
MIP20553.hyp Sequence
Translation from 0 to 396
> MIP20553.hyp
RKFRERCQAIKPIRTARVHNIIFVKMSSKSLFDSEEDAAQANKLSRKAKE
SPFMLVGEFCQFPDSESFAAVTSHGNFWLSSQLDTHISTHIYECTLRVRR
GSRLILTLAMSLTSIWGHFLMSLCDITVNAV*
MIP20553.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17734-PC | 106 | CG17734-PC | 1..106 | 26..131 | 545 | 100 | Plus |
CG17734-PB | 95 | CG17734-PB | 1..32 | 26..57 | 154 | 100 | Plus |
CG17734-PA | 101 | CG17734-PA | 1..32 | 26..57 | 154 | 100 | Plus |
CG11825-PC | 136 | CG11825-PC | 17..68 | 5..57 | 141 | 60.4 | Plus |
MIP20553.pep Sequence
Translation from 1 to 396
> MIP20553.pep
RKFRERCQAIKPIRTARVHNIIFVKMSSKSLFDSEEDAAQANKLSRKAKE
SPFMLVGEFCQFPDSESFAAVTSHGNFWLSSQLDTHISTHIYECTLRVRR
GSRLILTLAMSLTSIWGHFLMSLCDITVNAV*
MIP20553.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF18164-PA | 101 | GF18164-PA | 1..32 | 26..57 | 147 | 87.5 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG17229-PA | 101 | GG17229-PA | 1..32 | 26..57 | 164 | 100 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH18805-PA | 101 | GH18805-PA | 1..32 | 26..57 | 142 | 87.5 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17734-PC | 106 | CG17734-PC | 1..106 | 26..131 | 545 | 100 | Plus |
CG17734-PB | 95 | CG17734-PB | 1..32 | 26..57 | 154 | 100 | Plus |
CG17734-PA | 101 | CG17734-PA | 1..32 | 26..57 | 154 | 100 | Plus |
CG11825-PC | 136 | CG11825-PC | 17..68 | 5..57 | 141 | 60.4 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:08:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM26107-PA | 101 | GM26107-PA | 1..32 | 26..57 | 159 | 96.9 | Plus |
Dsec\GM20525-PA | 100 | GM20525-PA | 1..32 | 26..57 | 138 | 81.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD20668-PA | 101 | GD20668-PA | 1..32 | 26..57 | 164 | 100 | Plus |
Dsim\GD10739-PA | 100 | GD10739-PA | 1..32 | 26..57 | 138 | 81.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ23799-PA | 101 | GJ23799-PA | 1..32 | 26..57 | 133 | 75 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE24630-PA | 101 | GE24630-PA | 1..32 | 26..57 | 159 | 96.9 | Plus |