Clone MIP20553 Report

Search the DGRC for MIP20553

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:205
Well:53
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG17734-RC
Protein status:MIP20553.pep: gold
Sequenced Size:1287

Clone Sequence Records

MIP20553.complete Sequence

1287 bp assembled on 2010-04-06

GenBank Submission: BT122197.1

> MIP20553.complete
CAGAAAGTTTCGCGAACGTTGCCAAGCGATTAAACCGATCCGAACCGCCC
GCGTACATAATATAATATTCGTGAAAATGAGTTCCAAGTCCCTTTTCGAC
AGCGAGGAGGATGCCGCTCAGGCCAACAAATTATCCAGGAAAGCAAAGGA
ATCGCCCTTCATGCTTGTGGGTGAGTTTTGCCAATTTCCGGACAGCGAAA
GTTTTGCCGCCGTGACGTCACATGGAAACTTTTGGCTCAGCAGCCAGCTA
GATACGCACATATCTACACACATTTACGAATGTACATTGCGTGTGCGGCG
GGGAAGTCGGCTAATCTTGACCTTGGCCATGAGTTTAACGTCAATTTGGG
GTCACTTTTTGATGTCACTGTGTGACATAACGGTGAATGCAGTATGATCC
GTAACTCGTTCTGGAGAGCGAATGATGTAACAGGAGTATTTCGAAATTCA
CGCAAATCGCAAGGTATTACCGGATTCGTGGCCGCCGGATTGATTGGAGC
GTACAAGTACCGGAACCGCGGAACGATGAGCACCAGCGTCTTCCTGATGC
AGCTGCGAGTCGCCGCCCAGGGAACCGTCGTCGGATGTCTGACCCTCGGA
CTGGCCTACAGCATGGCCAAGGAGTACCTGTTCGACAAGGCGCCCAAGGA
AAAGTAATGGACAGTTCCTACTTAGTTAATACTAGCTGTAGCTTAAGTTG
TTTTAACCGCGTACAGAAAGAATCCTGAATCCCAATCCCAATTGAATCCC
CAATACAATTGTTTCATATTTATGTCTATTTCCAAATGCTTTCGGTTTCC
ACATGTCTATTAACATTCACTGAAACGCATATTCCCATATTCATGACTGT
CTATTTAGTTTTCATACGTTTTGATTTATTTATTTCCCCTATTTGATTTA
CTCTTAATTTTAGCACAAAGTCATTGACTAACTAAAGACCATCTGATTGC
TCGGCGTCCCTCTCTAAAAATCACAAGATGACATCGGCTAGATCACTTAC
ACATAAGCAATCAGACCCTCTATTTATTGCATCATCATGGTTCATACCGA
TCCACTTGGATAGAATCACTGGAGGGCAGGACTCTCGCAAGTATTCCCGA
GCGTTCAAGCCCACAACATTAGATACAGTTTTGTAAACCTGCGTAAGATT
GTGATATTGTGTGTTTTAATGTACAAGTTGAACATCCAAACGAAAGCTGT
CGAAGCAGACGACAAGATGATAAATACCTCTCGCATGATATGATATACTT
AAATAAATCAATTTAGACTAAAAAAAAAAAAAAAAAA

MIP20553.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:39:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-RB 1185 CG17734-RB 327..1141 463..1277 4060 99.8 Plus
CG17734-RA 992 CG17734-RA 585..948 914..1277 1805 99.7 Plus
CG17734-RA 992 CG17734-RA 394..584 463..653 955 100 Plus
CG17734-RB 1185 CG17734-RB 158..329 1..172 860 100 Plus
CG17734-RA 992 CG17734-RA 225..396 1..172 860 100 Plus
CG11825.a 663 CG11825.a 207..384 463..640 500 85.3 Plus
CG11825.a 663 CG11825.a 111..209 74..172 225 81.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 7067782..7068589 1269..462 4010 99.8 Minus
chr3R 27901430 chr3R 7069062..7069525 464..1 2200 98.3 Minus
chr2R 21145070 chr2R 6308193..6308370 640..463 500 85.4 Minus
chr2R 21145070 chr2R 6308368..6308466 172..74 225 81.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:23:10 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11242200..11243015 1277..462 4065 99.9 Minus
3R 32079331 3R 11243488..11243951 464..1 2320 100 Minus
2R 25286936 2R 10420733..10420910 640..463 500 85.4 Minus
2R 25286936 2R 10420908..10421006 172..74 225 81.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 10983031..10983846 1277..462 4065 99.8 Minus
3R 31820162 3R 10984319..10984782 464..1 2320 100 Minus
2R 25260384 2R 10421932..10422109 640..463 500 85.3 Minus
2R 25260384 2R 10422107..10422205 172..74 225 81.8 Minus
Blast to na_te.dros performed 2019-03-16 09:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy5 7369 gypsy5 GYPSY5 7369bp 5250..5331 930..848 124 62.7 Minus
Doc3-element 4740 Doc3-element DOC3 4740bp 56..135 918..839 121 61.3 Minus

MIP20553.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:10:53 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 7067782..7068589 462..1269 99 -> Minus
chr3R 7069065..7069525 1..461 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed on 2010-04-19 15:47:14 has no hits.
Sim4 to dmel-all-CDS-r5.32.fasta performed on 2011-03-16 22:00:33 has no hits.
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:35:36 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 1..321 77..397 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:01:41 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 1..321 77..397 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:47:13 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 195..1001 463..1269 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:00:33 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RB 197..1003 463..1269 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:35:36 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 49..1317 1..1269 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:01:41 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
CG17734-RC 49..1317 1..1269 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:53 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11242208..11243013 464..1269 100 <- Minus
3R 11243489..11243951 1..463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:53 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11242208..11243013 464..1269 100 <- Minus
3R 11243489..11243951 1..463 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:10:53 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11242208..11243013 464..1269 100 <- Minus
3R 11243489..11243951 1..463 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:35:36 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7067930..7068735 464..1269 100 <- Minus
arm_3R 7069211..7069673 1..463 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:38:14 Download gff for MIP20553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10983039..10983844 464..1269 100 <- Minus
3R 10984320..10984782 1..463 100   Minus

MIP20553.hyp Sequence

Translation from 0 to 396

> MIP20553.hyp
RKFRERCQAIKPIRTARVHNIIFVKMSSKSLFDSEEDAAQANKLSRKAKE
SPFMLVGEFCQFPDSESFAAVTSHGNFWLSSQLDTHISTHIYECTLRVRR
GSRLILTLAMSLTSIWGHFLMSLCDITVNAV*

MIP20553.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-PC 106 CG17734-PC 1..106 26..131 545 100 Plus
CG17734-PB 95 CG17734-PB 1..32 26..57 154 100 Plus
CG17734-PA 101 CG17734-PA 1..32 26..57 154 100 Plus
CG11825-PC 136 CG11825-PC 17..68 5..57 141 60.4 Plus

MIP20553.pep Sequence

Translation from 1 to 396

> MIP20553.pep
RKFRERCQAIKPIRTARVHNIIFVKMSSKSLFDSEEDAAQANKLSRKAKE
SPFMLVGEFCQFPDSESFAAVTSHGNFWLSSQLDTHISTHIYECTLRVRR
GSRLILTLAMSLTSIWGHFLMSLCDITVNAV*

MIP20553.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18164-PA 101 GF18164-PA 1..32 26..57 147 87.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17229-PA 101 GG17229-PA 1..32 26..57 164 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18805-PA 101 GH18805-PA 1..32 26..57 142 87.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17734-PC 106 CG17734-PC 1..106 26..131 545 100 Plus
CG17734-PB 95 CG17734-PB 1..32 26..57 154 100 Plus
CG17734-PA 101 CG17734-PA 1..32 26..57 154 100 Plus
CG11825-PC 136 CG11825-PC 17..68 5..57 141 60.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26107-PA 101 GM26107-PA 1..32 26..57 159 96.9 Plus
Dsec\GM20525-PA 100 GM20525-PA 1..32 26..57 138 81.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20668-PA 101 GD20668-PA 1..32 26..57 164 100 Plus
Dsim\GD10739-PA 100 GD10739-PA 1..32 26..57 138 81.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23799-PA 101 GJ23799-PA 1..32 26..57 133 75 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24630-PA 101 GE24630-PA 1..32 26..57 159 96.9 Plus