Clone MIP20590 Report

Search the DGRC for MIP20590

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:205
Well:90
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptmRpL49-RA
Protein status:MIP20590.pep: gold
Sequenced Size:691

Clone Sequence Records

MIP20590.complete Sequence

691 bp assembled on 2011-03-17

GenBank Submission: BT126389.1

> MIP20590.complete
ATCACTGACCAGCCAGTGCATATGTAACAACTATTTTTTGTATTTCTTGG
GAAATCTGTTAGTTTTTAGCCAAAAAACATGGCAACAAGCGCCAAACTGA
TGCTAGGCAGCGGCCTCTGCCAAAAGCTAAGCCAGCTTACCAGGCAAATA
CACATGCAACCGGCACTTATGTCCAGTTTTCGTTCATCCCGCGAAGTTCA
GGAGCTGGACAAGTATCCTGAAGTGGAGGTGGTGGCCAATCCGCCCGAGT
GGCGTTTTGTGGAGCGCTTGCTACCAGCGAAGACAGTACCACAGCCGGTG
GAGAAGCCAAAATATCCATCCGGCTGGCAGCCACAAAAGGAGGATGGCTC
AGAACTGGGTTACCATGTGGCCAGGACGAAGAATCACATGGTGCCCGTGT
ATCTGCACACCAGGTTCCGTGGCCAGCGCCGGATCACGGTGGTGCGACGC
GTCCAAGGAGACATTTGGACGCTGGAAAAGGATCTGCGTGCGGTGGTGGA
GCAGTCGCGAAACGGCAAGGTCTGCGCCACGAGAATCAATGAGCTGAGCG
GTCAGATACACTTCCATGGTGACCACGTGGACGTCCTGCGTGACTATCTC
AAGGAGAAGGGCTTCTGAAGGTCCACAAATGAACCGTCTGTGCCGCAATA
AAAGCTTTTCTGTTGATGTAAAAAAAAAAAAAAAAAAAAAA

MIP20590.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:33:04
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12798229..12798763 133..667 2675 100 Plus
chrX 22417052 chrX 12798033..12798167 1..135 660 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12907306..12907845 133..672 2685 99.8 Plus
X 23542271 X 12907110..12907244 1..135 660 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12915404..12915943 133..672 2685 99.8 Plus
X 23527363 X 12915208..12915342 1..135 660 99.2 Plus
Blast to na_te.dros performed on 2019-03-16 22:33:02 has no hits.

MIP20590.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:33:53 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12798033..12798167 1..135 99 -> Plus
chrX 12798232..12798764 136..669 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-22 17:53:18 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL49-RA 1..540 79..618 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:57:36 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL49-RA 1..540 79..618 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:29:50 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL49-RA 1..540 79..618 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-22 17:53:18 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL49-RA 5..672 1..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:57:36 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL49-RA 6..673 1..669 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:50 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
mRpL49-RA 6..673 1..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:53 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
X 12907110..12907244 1..135 99 -> Plus
X 12907309..12907841 136..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:53 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
X 12907110..12907244 1..135 99 -> Plus
X 12907309..12907841 136..669 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:33:53 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
X 12907110..12907244 1..135 99 -> Plus
X 12907309..12907841 136..669 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:57:36 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12801143..12801277 1..135 99 -> Plus
arm_X 12801342..12801874 136..669 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:18 Download gff for MIP20590.complete
Subject Subject Range Query Range Percent Splice Strand
X 12915407..12915939 136..669 99   Plus
X 12915208..12915342 1..135 99 -> Plus

MIP20590.pep Sequence

Translation from 78 to 617

> MIP20590.pep
MATSAKLMLGSGLCQKLSQLTRQIHMQPALMSSFRSSREVQELDKYPEVE
VVANPPEWRFVERLLPAKTVPQPVEKPKYPSGWQPQKEDGSELGYHVART
KNHMVPVYLHTRFRGQRRITVVRRVQGDIWTLEKDLRAVVEQSRNGKVCA
TRINELSGQIHFHGDHVDVLRDYLKEKGF*

MIP20590.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21390-PA 179 GF21390-PA 1..179 1..179 806 81 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17741-PA 179 GG17741-PA 1..179 1..179 908 93.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17902-PA 165 GH17902-PA 2..165 17..179 660 72.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:50
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL49-PB 179 CG4647-PB 1..179 1..179 943 100 Plus
mRpL49-PA 179 CG4647-PA 1..179 1..179 943 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:32:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16280-PA 179 GI16280-PA 1..179 1..179 698 70.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22970-PA 179 GL22970-PA 1..179 1..179 715 72.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18327-PA 179 GA18327-PA 1..179 1..179 715 72.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11588-PA 179 GM11588-PA 1..179 1..179 932 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24800-PA 179 GD24800-PA 1..179 1..179 928 95.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25645-PA 184 GK25645-PA 1..184 1..179 694 70.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:32:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17031-PA 179 GE17031-PA 1..179 1..179 905 93.3 Plus

MIP20590.hyp Sequence

Translation from 78 to 617

> MIP20590.hyp
MATSAKLMLGSGLCQKLSQLTRQIHMQPALMSSFRSSREVQELDKYPEVE
VVANPPEWRFVERLLPAKTVPQPVEKPKYPSGWQPQKEDGSELGYHVART
KNHMVPVYLHTRFRGQRRITVVRRVQGDIWTLEKDLRAVVEQSRNGKVCA
TRINELSGQIHFHGDHVDVLRDYLKEKGF*

MIP20590.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
mRpL49-PB 179 CG4647-PB 1..179 1..179 943 100 Plus
mRpL49-PA 179 CG4647-PA 1..179 1..179 943 100 Plus