Clone MIP20741 Report

Search the DGRC for MIP20741

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:207
Well:41
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG2698-RC
Protein status:MIP20741.pep: gold
Sequenced Size:3344

Clone Sequence Records

MIP20741.complete Sequence

3344 bp assembled on 2010-05-21

GenBank Submission: BT124913.1

> MIP20741.complete
CAGAAACGACGTATTTTTGTTTATGTGAGTCCGCTCCCCGCCCCTCATAA
AGTGAGTGGCCAGCTGCTCGTCCAATGACCACCTCTAGTTGCGGAATTTA
GTATCTCCTTGTCGGAATCCCACCCAGGCCCCGTAGGAATCCATCTGTTG
CTGACCACTGAACACTGAGGCATTTCATCAAAATTCCCCGTTTCTCCGGG
CACACGCAAAATGAATCGGTCCGAACCGATTCCCATTCGACGGGACCGCT
CTTTTGACAGTGTGATCAACCGCCTGCTCCGTATGAGGTCCCAGAATCAT
GAGAGCTTTCGCGCCGCCATGTACAATTTCCTGATCGCCGCAGGAGTTGC
GGCATTCGTCGCTGTGTGCTTCATTCTTGGGCCCTTCGTCCGTCCATTGC
TGTGGGCCTTCCTCATGGGCGCCGTGCTCTTTCCATTCAAGCGACGTTTG
GCGGAGAGCGTAAACAGTTGGTTTCACCGCTTGGAGGTGCGCGACTCCAA
TGTACTGGTTTCGATCTGCCTATCGCCGCTGGAAGCCACAGAGCATTGCG
GGCGGTTGCTGATCGGGTGGCTCTGCGAACACTGGCAACTCCTCCTGGCC
GGATGCGGAGTGGCCGGGTGCATTAAGCTGCTGGTTTTATATGCACCGAA
GGGTTTTCTGCTGGCCATCTGGCATTGGATCACCTTTTCCCATGGCTTGT
TCGTTCAAATTATTGGATTCCTCAACGTATACGTGCTCATTTCCTTGATC
GTGGTCTACTTGAGCTGCGTCCACTTCTTTTGGAGGCCAGAGAATAGTGC
CCACTTCGTGGTCGCCGGACAATCCATGTGGATAGCTGTAGCGGGCTATC
TGAGTAGCTTTCTTGGCGCCCTGCAGGTGCCGGTATTTCTACTGGTTATG
ACCTATGTAACAGCATCTACGGCATATCATCTGCAAACCCTAGATGATTC
GGGATCTTATCTTCACCGCCTGCAAAAGTTGTTCGACAAGAACGATTTTG
AGCGATCGCTAAGCAACTTCAGCATTTGTGGCAGACCAGGCAACGAGCCA
CTGAGTCCGGGGCTGCAGTCGGATGTGGAGGATGTATCGTTAAGTGACAC
TGTCGACTCGACGGACACGTTTGATGTCAAGCCAGAAACGGAGGTTCCCA
GTCACCAGAGCGACACATTCTTTAAGCTCCTTTTTTATGCCTGCTTGGGC
ACATTCCTCTATCGCAACGTGTGGATGTTTATCCTAGCGGCAATCCCAGT
AATTCTGCATCTTATTTACACCGTAGGAGAGTATACGGGAATTACTAAAT
TTGTTTGCAACAAAATTAGCGAAGTTTACGCAGCGCTGCGTTTCTGGGCA
ATCGAACACCATTCTGCCGTGCTGCCACTCTGTCTACCTGGTGTCCTGGA
ACTAAACTATAAAATCAACACTATCGTGCGGGATTCACTAAAGGCCTCCG
TTGAATCAGTCACCTCCATCCTAATGATCATCCTCATGCTGCTTATCATC
GTGTTTCTAAGCGTGTTCTTCTGCGTGAACATTTACTCGGAGACGATTGA
GGTGGCTTACCTGGGCAAGGATTTAATTAACAAGACGATCACAGATCGGC
CTGAGCTAATTGACATCTTGCCTGCCAACATGCAATCGTCCATCGAGGAT
GCTCTTGATAACGCACACCATTATGGTCGCCGTAAGATTGAAACCTACAT
AGACGACTGGCTGGCAGACGCCGATAAGGTGCACGCCACCAAGTTGAAGG
AGCAGATCCTCGAAGTGTGGGACCGGCTCATCCAGTATTGGATCGATTTC
AATAAGGCCGGTTCATCGTACGGGCCGCGGGTACCAACGGATGCCCTGAA
AAGCACATTTGGCGAAATCGTCGACAATCCAGGTAAGCATAAGTTCCACT
CCCTATGGCTTCTTTCAATTTTCTTTCCTCCCGTTTTATTAATACATTTT
TTGAGTTCTTTTTCGGGGTTTCCGCATGGGTGTCCGGGCTTTCGTTAAGT
ACTTGCTCCCATCATCCATCCCGTAACACTCGTTTGCGTCTATGAAATAA
CTCATACTGTGTGCATCTGCTAACCGATGGCCGTTTATTTAACCAAGGAC
ATTTTAAAGAGCTAGTTTTAGTGGCAAAACAGGGCATTATCGGCTGGGCG
CAGAGCAATACGCAGACGATCCTCGAGGTTGCAGAGTCGTTGTGGCACAT
CATCCGGACCAACATGTCCATGATAATGGGCGTGACCGGGGAGATTCTAT
CCCTTGTGCTTTCGGGTGGACAAGCGTGCATTGAGTTTATTCTAGATATG
ATTGTATTCTTTACGGCTCTGTTCTACCTGCTCTCGAGCAGTCAGGAGAA
GTACGCGCCCCTGCAGATCACAAAATACCTGGGCTATTCCAGCTCGGGTA
TCAAAATCGCCGATGCCCTGGAAAACTCCATTACCGTAGTCCTAGTCTCA
ATGTTTAGGTGCTCCACCTTTACGGGTCTGTTCACCTGGTTAGTCCATAC
GGTTTTCGGGGCCCGGATTGTGTTCCTGCCGTCCGCCTTGGCAGCTATGT
TGGCTGCTGCTCCTTTCCTAGGCAGTTACTGGTGTGCGGTGCCAGCCTTT
CTAGAGCTTTGGCTGGCCCAGGACCGCTTCTATGCAGGACTTATATTGTT
CCTGCTTCAGTTTTTCGTGCCATCATCTTTTGAAACTGCTATATATGCGG
ACCTCAAAGGTGGACATCCCTACCTCAACGGCCTGGCCATAGCAGGCGGA
ATGTATTGGATCGGTTGGCAAGGAGCTATTTTCGGACCCCTTATGCTTTG
CTTCTTCATCGGCCTTTTTGAGGTGGCCACGCTGGCCATGCGCAGTCATC
AAGAGCCCAGGAACAGTACGGACGAGGAGCGGACCACGTGAGTTGGCATG
GACCAGAAACTACGAATTTCCTTTTAATACTCGAACTGCGAACTAACATA
AGCTGTGTGGCCAAATACCTGACAATCAAAATGAGATTGGCCCGAATATC
ATAACCTAGACATAGGCTGGAGCTTCCTTTAACTATTGTTGTTCGTTTCT
CAGTTGCTAATCTTACCGCTTTGCGAACATTGATTTTTATGATATTATTC
AATATTCCGTCTATGCAGCAAGCGCTCCTTAATATCTATTCTATCGATCT
TAGTGTTCTTACATACAAAATGTACCTCGAATTATTTGTAGTCGCGAAAC
ATTTCCAAAGCCTTCAAGTACCGATATCGTGCTCGCTACTAATTGCTTAA
TGTAAAATTGTGATGTGTTTAAACTTAGATACAAAATGTCTTGCAAATAT
ATTTCTGTACTAACTAACTACCGCTGAAAAAAAAAAAAAAAAAA

MIP20741.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG2698-RA 3349 CG2698-RA 89..1970 1..1882 9410 100 Plus
CG2698-RB 3152 CG2698-RB 54..1935 1..1882 9410 100 Plus
CG2698-RA 3349 CG2698-RA 1969..3189 2108..3328 6105 100 Plus
CG2698-RB 3152 CG2698-RB 1934..2686 2108..2860 3765 100 Plus
CG2698-RB 3152 CG2698-RB 2696..3152 2861..3317 2285 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3829261..3830219 1342..2300 4795 100 Plus
chr3R 27901430 chr3R 3828594..3829200 735..1341 3035 100 Plus
chr3R 27901430 chr3R 3827936..3828499 184..747 2775 99.5 Plus
chr3R 27901430 chr3R 3831295..3831763 2858..3326 2345 100 Plus
chr3R 27901430 chr3R 3830278..3830688 2300..2710 2055 100 Plus
chr3R 27901430 chr3R 3827656..3827836 1..183 835 98.4 Plus
chr3R 27901430 chr3R 3830756..3830908 2709..2861 765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8003220..8004178 1342..2300 4795 100 Plus
3R 32079331 3R 8002553..8003159 735..1341 3035 100 Plus
3R 32079331 3R 8001895..8002458 184..747 2775 99.5 Plus
3R 32079331 3R 8005251..8005721 2858..3328 2355 100 Plus
3R 32079331 3R 8004237..8004647 2300..2710 2055 100 Plus
3R 32079331 3R 8001613..8001795 1..183 915 100 Plus
3R 32079331 3R 8004713..8004864 2710..2861 760 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7744051..7745009 1342..2300 4795 100 Plus
3R 31820162 3R 7743384..7743990 735..1341 3035 100 Plus
3R 31820162 3R 7742726..7743289 184..747 2775 99.4 Plus
3R 31820162 3R 7746082..7746552 2858..3328 2355 100 Plus
3R 31820162 3R 7745068..7745478 2300..2710 2055 100 Plus
3R 31820162 3R 7742444..7742626 1..183 915 100 Plus
3R 31820162 3R 7745544..7745695 2710..2861 760 100 Plus
Blast to na_te.dros performed 2019-03-15 18:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 3311..3385 1388..1463 134 65.8 Plus

MIP20741.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:55:05 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3827936..3828487 184..735 100 -> Plus
chr3R 3827656..3827836 1..183 98 -> Plus
chr3R 3828595..3829200 736..1341 100 -> Plus
chr3R 3829261..3830219 1342..2300 100 -> Plus
chr3R 3830279..3830688 2301..2710 100 -> Plus
chr3R 3830755..3830907 2711..2860 98 -> Plus
chr3R 3831298..3831763 2861..3326 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-05-21 13:51:04 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RB 1..1677 211..1891 99 == Plus
CG2698-RB 1678..2423 2115..2860 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:58:46 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RB 1..1677 211..1891 99 == Plus
CG2698-RB 1678..2423 2115..2860 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:35:36 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RC 1..1788 211..1998 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:04:26 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RC 1..1788 211..1998 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-21 13:51:03 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RA 30..1916 1..1891 99 == Plus
CG2698-RA 1917..3119 2115..3317 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:58:46 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RA 30..1916 1..1891 99 == Plus
CG2698-RA 1917..3119 2115..3317 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:35:36 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RC 52..3377 1..3326 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:04:26 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
CG2698-RC 52..3377 1..3326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:55:05 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8001613..8001795 1..183 100 -> Plus
3R 8001895..8002446 184..735 100 -> Plus
3R 8002554..8003159 736..1341 100 -> Plus
3R 8003220..8004178 1342..2300 100 -> Plus
3R 8004238..8004647 2301..2710 100 -> Plus
3R 8004714..8004863 2711..2860 100 -> Plus
3R 8005254..8005719 2861..3326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:55:05 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8001613..8001795 1..183 100 -> Plus
3R 8001895..8002446 184..735 100 -> Plus
3R 8002554..8003159 736..1341 100 -> Plus
3R 8003220..8004178 1342..2300 100 -> Plus
3R 8004238..8004647 2301..2710 100 -> Plus
3R 8004714..8004863 2711..2860 100 -> Plus
3R 8005254..8005719 2861..3326 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:55:05 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8001613..8001795 1..183 100 -> Plus
3R 8001895..8002446 184..735 100 -> Plus
3R 8002554..8003159 736..1341 100 -> Plus
3R 8003220..8004178 1342..2300 100 -> Plus
3R 8004238..8004647 2301..2710 100 -> Plus
3R 8004714..8004863 2711..2860 100 -> Plus
3R 8005254..8005719 2861..3326 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:35:36 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3827335..3827517 1..183 100 -> Plus
arm_3R 3827617..3828168 184..735 100 -> Plus
arm_3R 3828276..3828881 736..1341 100 -> Plus
arm_3R 3828942..3829900 1342..2300 100 -> Plus
arm_3R 3829960..3830369 2301..2710 100 -> Plus
arm_3R 3830436..3830585 2711..2860 100 -> Plus
arm_3R 3830976..3831441 2861..3326 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:35:52 Download gff for MIP20741.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7742726..7743277 184..735 100 -> Plus
3R 7743385..7743990 736..1341 100 -> Plus
3R 7744051..7745009 1342..2300 100 -> Plus
3R 7745069..7745478 2301..2710 100 -> Plus
3R 7745545..7745694 2711..2860 100 -> Plus
3R 7746085..7746550 2861..3326 100   Plus
3R 7742444..7742626 1..183 100 -> Plus

MIP20741.pep Sequence

Translation from 210 to 1997

> MIP20741.pep
MNRSEPIPIRRDRSFDSVINRLLRMRSQNHESFRAAMYNFLIAAGVAAFV
AVCFILGPFVRPLLWAFLMGAVLFPFKRRLAESVNSWFHRLEVRDSNVLV
SICLSPLEATEHCGRLLIGWLCEHWQLLLAGCGVAGCIKLLVLYAPKGFL
LAIWHWITFSHGLFVQIIGFLNVYVLISLIVVYLSCVHFFWRPENSAHFV
VAGQSMWIAVAGYLSSFLGALQVPVFLLVMTYVTASTAYHLQTLDDSGSY
LHRLQKLFDKNDFERSLSNFSICGRPGNEPLSPGLQSDVEDVSLSDTVDS
TDTFDVKPETEVPSHQSDTFFKLLFYACLGTFLYRNVWMFILAAIPVILH
LIYTVGEYTGITKFVCNKISEVYAALRFWAIEHHSAVLPLCLPGVLELNY
KINTIVRDSLKASVESVTSILMIILMLLIIVFLSVFFCVNIYSETIEVAY
LGKDLINKTITDRPELIDILPANMQSSIEDALDNAHHYGRRKIETYIDDW
LADADKVHATKLKEQILEVWDRLIQYWIDFNKAGSSYGPRVPTDALKSTF
GEIVDNPGKHKFHSLWLLSIFFPPVLLIHFLSSFSGFPHGCPGFR*

MIP20741.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18152-PA 819 GF18152-PA 1..557 1..557 2701 91 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14330-PA 818 GG14330-PA 1..557 1..557 2874 96.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14051-PA 820 GH14051-PA 1..557 1..557 2357 83.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG2698-PC 595 CG2698-PC 1..595 1..595 3129 100 Plus
CG2698-PE 821 CG2698-PE 1..561 1..561 2921 99.6 Plus
CG2698-PI 806 CG2698-PI 1..557 1..557 2912 100 Plus
CG2698-PH 865 CG2698-PH 1..557 1..557 2912 100 Plus
CG2698-PG 813 CG2698-PG 1..557 1..557 2912 100 Plus
CG2698-PD 869 CG2698-PD 1..557 1..557 2912 100 Plus
CG2698-PA 817 CG2698-PA 1..557 1..557 2912 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24426-PA 815 GI24426-PA 1..553 1..557 2380 83.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24454-PA 819 GL24454-PA 1..556 1..557 2468 82.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:17:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15434-PB 820 GA15434-PB 1..556 1..557 2477 83 Plus
Dpse\GA15434-PA 819 GA15434-PA 1..556 1..557 2475 83 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10992-PA 818 GM10992-PA 1..557 1..557 2916 98.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19962-PA 818 GD19962-PA 1..557 1..557 2924 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:17:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14284-PA 818 GJ14284-PA 1..556 1..557 2405 83.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13068-PA 820 GK13068-PA 6..557 8..557 2447 85.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24959-PA 818 GE24959-PA 1..557 1..557 2913 97.7 Plus

MIP20741.hyp Sequence

Translation from 210 to 1997

> MIP20741.hyp
MNRSEPIPIRRDRSFDSVINRLLRMRSQNHESFRAAMYNFLIAAGVAAFV
AVCFILGPFVRPLLWAFLMGAVLFPFKRRLAESVNSWFHRLEVRDSNVLV
SICLSPLEATEHCGRLLIGWLCEHWQLLLAGCGVAGCIKLLVLYAPKGFL
LAIWHWITFSHGLFVQIIGFLNVYVLISLIVVYLSCVHFFWRPENSAHFV
VAGQSMWIAVAGYLSSFLGALQVPVFLLVMTYVTASTAYHLQTLDDSGSY
LHRLQKLFDKNDFERSLSNFSICGRPGNEPLSPGLQSDVEDVSLSDTVDS
TDTFDVKPETEVPSHQSDTFFKLLFYACLGTFLYRNVWMFILAAIPVILH
LIYTVGEYTGITKFVCNKISEVYAALRFWAIEHHSAVLPLCLPGVLELNY
KINTIVRDSLKASVESVTSILMIILMLLIIVFLSVFFCVNIYSETIEVAY
LGKDLINKTITDRPELIDILPANMQSSIEDALDNAHHYGRRKIETYIDDW
LADADKVHATKLKEQILEVWDRLIQYWIDFNKAGSSYGPRVPTDALKSTF
GEIVDNPGKHKFHSLWLLSIFFPPVLLIHFLSSFSGFPHGCPGFR*

MIP20741.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:37:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2698-PC 595 CG2698-PC 1..595 1..595 3129 100 Plus
CG2698-PE 821 CG2698-PE 1..561 1..561 2921 99.6 Plus
CG2698-PI 806 CG2698-PI 1..557 1..557 2912 100 Plus
CG2698-PH 865 CG2698-PH 1..557 1..557 2912 100 Plus
CG2698-PG 813 CG2698-PG 1..557 1..557 2912 100 Plus