Clone MIP21060 Report

Search the DGRC for MIP21060

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:210
Well:60
Vector:pOT2
Associated Gene/TranscriptCG13012-RB
Protein status:MIP21060.pep: gold
Sequenced Size:944

Clone Sequence Records

MIP21060.complete Sequence

944 bp assembled on 2010-04-05

GenBank Submission: BT122185.1

> MIP21060.complete
TTTTGTATTTGTTTATTTCGGTCGCCTGACAATCTCCAAATCGCCTTAAA
AAAAAAATAAAAAAACAAAATAACAACGTACACAACAACGGGGCATTTAA
TTAAATAAATCGCAAACATCAGTCAACGGCCTGTTATTTCCAGCCGCCAA
ATCGGACATTATATCGGACATTCTATATACTATATAGCACATTTCGAGAG
ATCCAATCTGGCGAGAGAAAACCCAGAACAGGAAACAATTGAAATCATCT
GAGAAAACGGTATTTATGATGGGAAACGTGGCCAAAAGCAATATAACATG
GACTTGAAAATGGAGCTGGGCGGCTACGTGCACTCCGCACCCAACACCAA
GCGCTTCGTTGTGGAGGACTCGATTACCAAGGTGACCTCTGATGGGGAGC
CGCACGGCATGATGACCATGGTGGCCGGATTATCCGGCCTTTTGGCGGCC
ATCATCATTTTGGCCGTCCTCGTGTCCATGGTATCTTGTCGCAAGCAGAA
GAGCACCAACCGGAAGAGCAATTCCTCCGCCAATGTGGTGGCCATGACCA
GTGTGGCGCAGGATCAGCCCCAGTTGGCCGGTAACTTGAACGCAGCGTTC
GCTGAGAGCACTCTGACCTTGGACAAGGTCAAGCAGGACACAGAGGATCA
ATGGCGACCCACAGCCGTGGTGGTGGAGCGGTACTAGTGGAAGCAGGAAG
CACCAAGCACCACCGTCAACCAGCGGCACATGGGCACGTGATGTTTATTG
TAAACGTTTGAGACTGACACTTAGAATAAGGATTTCCATCACCATCTTAT
AATTAATCTATATAACATATGACACCTTATTTTTTTTTTTTTGCTTGTTA
AAATATTATACTGCTATACTATGAAATATGTGAAAATATATATTTGTTAG
AATTAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP21060.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13012.a 854 CG13012.a 239..854 295..910 3080 100 Plus
rudimentary-RA 7440 rudimentary-RA 7168..7440 914..642 1365 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16558502..16558910 910..502 2000 99.3 Minus
chrX 22417052 chrX 16565820..16566113 294..1 1470 100 Minus
chrX 22417052 chrX 16559007..16559136 503..374 605 97.7 Minus
chrX 22417052 chrX 16559751..16559829 373..295 395 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:23:41 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16668814..16669226 914..502 2065 100 Minus
X 23542271 X 16676136..16676429 294..1 1470 100 Minus
X 23542271 X 16669313..16669442 503..374 650 100 Minus
X 23542271 X 16670057..16670135 373..295 395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16676912..16677324 914..502 2065 100 Minus
X 23527363 X 16684234..16684527 294..1 1470 100 Minus
X 23527363 X 16677411..16677540 503..374 650 100 Minus
X 23527363 X 16678155..16678233 373..295 395 100 Minus
Blast to na_te.dros performed on 2019-03-16 15:23:59 has no hits.

MIP21060.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:25:00 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16558502..16558908 504..910 99 <- Minus
chrX 16559007..16559136 374..503 97 <- Minus
chrX 16559751..16559829 295..373 100 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-19 15:46:25 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RB 1..390 298..687 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 22:00:20 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RB 1..390 298..687 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:44:17 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RC 1..390 298..687 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:45:25 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RC 1..390 298..687 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:46:25 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RB 1..390 298..687 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:00:20 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RB 104..723 288..910 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:44:17 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RC 325..1234 1..910 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:45:25 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
CG13012-RC 325..1234 1..910 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:00 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
X 16668818..16669224 504..910 100 <- Minus
X 16669313..16669442 374..503 100 <- Minus
X 16670057..16670135 295..373 100 <- Minus
X 16676136..16676429 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:00 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
X 16668818..16669224 504..910 100 <- Minus
X 16669313..16669442 374..503 100 <- Minus
X 16670057..16670135 295..373 100 <- Minus
X 16676136..16676429 1..294 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:25:00 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
X 16668818..16669224 504..910 100 <- Minus
X 16669313..16669442 374..503 100 <- Minus
X 16670057..16670135 295..373 100 <- Minus
X 16676136..16676429 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:44:17 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16563346..16563475 374..503 100 <- Minus
arm_X 16564090..16564168 295..373 100 <- Minus
arm_X 16562851..16563257 504..910 100 <- Minus
arm_X 16570169..16570462 1..294 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:37:56 Download gff for MIP21060.complete
Subject Subject Range Query Range Percent Splice Strand
X 16684234..16684527 1..294 100   Minus
X 16676916..16677322 504..910 100 <- Minus
X 16677411..16677540 374..503 100 <- Minus
X 16678155..16678233 295..373 100 <- Minus

MIP21060.pep Sequence

Translation from 297 to 686

> MIP21060.pep
MDLKMELGGYVHSAPNTKRFVVEDSITKVTSDGEPHGMMTMVAGLSGLLA
AIIILAVLVSMVSCRKQKSTNRKSNSSANVVAMTSVAQDQPQLAGNLNAA
FAESTLTLDKVKQDTEDQWRPTAVVVERY*

MIP21060.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21729-PA 131 GF21729-PA 1..131 1..129 518 81.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:06:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18237-PA 130 GG18237-PA 1..130 1..129 630 93.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11930-PA 143 GH11930-PA 1..143 5..129 397 63.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13012-PE 129 CG13012-PE 1..129 1..129 640 100 Plus
CG13012-PD 129 CG13012-PD 1..129 1..129 640 100 Plus
CG13012-PC 129 CG13012-PC 1..129 1..129 640 100 Plus
CG13012-PB 129 CG13012-PB 1..129 1..129 640 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15351-PA 139 GI15351-PA 1..139 5..129 418 65.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12945-PA 141 GL12945-PA 1..141 1..129 468 69.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11975-PA 176 GA11975-PA 43..176 1..129 471 72.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13379-PA 202 GM13379-PA 74..202 1..129 668 96.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19456-PA 143 GJ19456-PA 1..143 5..129 416 64.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19949-PA 134 GK19949-PA 14..134 16..129 279 53.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15952-PA 205 GE15952-PA 76..205 1..129 623 90.8 Plus

MIP21060.hyp Sequence

Translation from 297 to 686

> MIP21060.hyp
MDLKMELGGYVHSAPNTKRFVVEDSITKVTSDGEPHGMMTMVAGLSGLLA
AIIILAVLVSMVSCRKQKSTNRKSNSSANVVAMTSVAQDQPQLAGNLNAA
FAESTLTLDKVKQDTEDQWRPTAVVVERY*

MIP21060.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13012-PE 129 CG13012-PE 1..129 1..129 640 100 Plus
CG13012-PD 129 CG13012-PD 1..129 1..129 640 100 Plus
CG13012-PC 129 CG13012-PC 1..129 1..129 640 100 Plus
CG13012-PB 129 CG13012-PB 1..129 1..129 640 100 Plus