Clone MIP21131 Report

Search the DGRC for MIP21131

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:211
Well:31
Vector:pOT2
Associated Gene/TranscriptwupA-RA
Protein status:MIP21131.pep: gold
Sequenced Size:1156

Clone Sequence Records

MIP21131.complete Sequence

1156 bp assembled on 2010-12-06

GenBank Submission: BT125818.1

> MIP21131.complete
GACCGTTCAGTCTTTTTGTGTCGTTCAGTATCATCCGATTCGTGTGATCG
ACAGCATAGCCGAATTTTTTTTCTTTTTTTTCTAATTCCTTGAAGTAACC
AAAAACACAAATCAAAATGGCTGATGATGAGGCTAAGAAGGCTAAACAGG
CTGAGATCGAGCGCAAGCGTGCTGAGGTGCGCAAGCGCATGGAGGAAGCC
TCCAAGGCCAAGAAGGCCAAGAAGGGTTTCATGACCCCAGAGAGGAAGAA
GAAACTCAGGTTGCTGCTGCGTAAGAAAGCCGCTGAGGAGCTGAAGAAAG
AACAGGAACGCAAAGCGGCTGAACGTAGACGCATCATCGAAGAACGTTGC
GGCAGTCCCAGGAATCTCAGCGATGCCAGCGAAGACACACTCAAATCTCT
GATCAAGCAACACTATGACAGGATTAATAAATTGGAGGACCAGAAATATG
ATCTTGAGTATGTTGTTAAACGCAAGGATGTTGAGATCAACGATCTCAAT
GCCCAAGTTAACGATCTTCGCGGCAAGTTCGTCAAGCCAGCCCTGAAGAA
GGTCTCCAAATACGAAAACAAATTCGCCAAGCTGCAGAAGAAGGCCGCTG
AGTTCAACTTCCGCAACCAGCTCAAGGTGGTGAAGAAGAAGGAGTTCACG
CTGGAGGAGGAGGAGAAGGAGAAGAAACCCGACTGGTCCAAGGGCAAGCC
CGGAGATGCCAAGGTGAAGGAGGAGGTTGAGGCCGAAGCTTAAGTGTCCA
CACGTCCACTAGTGTCCACTGACCCGTGACTCCCGCCCTAAACAATAATT
GAAATTATTTACAACAATTATCTGAAGCAATATAATTTATATGAATCTAT
TAATATATATATATATCCGCAAATATATATGCATGTATATATCTCGCCAT
ATATATGTGTCCACAATGGATTTGATCAGAAATGAAGTCAATAAACAACA
ACAGCAACAACTAAATTAACTCAAAATCAAAATCAAACTCAGACTCAAAC
TCAAACTCAACTGCTTATAAATAATTCAGATCAACGATTCAAAACAACAG
CCAAACATCTGAACGCCTTGATGAATTATTTATTATATTTCATTATTTAC
AAATTATATTTTTTAATGTAAATTAAATTAAATTACAAAAAAAAAAAAAA
AAAAAA

MIP21131.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:14:22
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17994881..17995347 1136..670 2335 100 Minus
chrX 22417052 chrX 17995994..17996135 671..530 710 100 Minus
chrX 22417052 chrX 18002767..18002897 260..130 655 100 Minus
chrX 22417052 chrX 18002578..18002702 384..260 625 100 Minus
chrX 22417052 chrX 18001883..18001985 485..383 515 100 Minus
chrX 22417052 chrX 18006037..18006131 95..1 475 100 Minus
chrX 22417052 chrX 17996201..17996246 529..484 230 100 Minus
chrX 22417052 chrX 18003930..18003968 132..94 195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:14:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18105556..18106034 1148..670 2395 100 Minus
X 23542271 X 18106681..18106822 671..530 710 100 Minus
X 23542271 X 18113447..18113577 260..130 655 100 Minus
X 23542271 X 18113258..18113382 384..260 625 100 Minus
X 23542271 X 18112562..18112664 485..383 515 100 Minus
X 23542271 X 18116707..18116801 95..1 475 100 Minus
X 23542271 X 18106888..18106933 529..484 230 100 Minus
X 23542271 X 18114610..18114648 132..94 195 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18113654..18114132 1148..670 2395 100 Minus
X 23527363 X 18114779..18114920 671..530 710 100 Minus
X 23527363 X 18121545..18121675 260..130 655 100 Minus
X 23527363 X 18121356..18121480 384..260 625 100 Minus
X 23527363 X 18120660..18120762 485..383 515 100 Minus
X 23527363 X 18124805..18124899 95..1 475 100 Minus
X 23527363 X 18114986..18115031 529..484 230 100 Minus
X 23527363 X 18122708..18122746 132..94 195 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:14:20 has no hits.

MIP21131.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:15:02 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 18002767..18002895 132..260 100 <- Minus
chrX 18003931..18003966 96..131 100 <- Minus
chrX 18006037..18006131 1..95 100   Minus
chrX 17995188..17995345 672..829 100 <- Minus
chrX 17995994..17996135 530..671 100 <- Minus
chrX 17996201..17996244 486..529 100 <- Minus
chrX 18001883..18001983 385..485 100 <- Minus
chrX 18002578..18002701 261..384 100 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2010-12-06 17:16:19 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RA 1..627 117..743 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:33:41 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RA 1..627 117..743 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:53:15 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RA 1..627 117..743 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-06 17:16:18 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RA 22..1157 1..1136 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:33:41 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RA 25..1160 1..1136 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:53:15 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
wupA-RA 25..1160 1..1136 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:15:02 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105568..18106032 672..1136 100 <- Minus
X 18106681..18106822 530..671 100 <- Minus
X 18106888..18106931 486..529 100 <- Minus
X 18112562..18112662 385..485 100 <- Minus
X 18113258..18113381 261..384 100 <- Minus
X 18113447..18113575 132..260 100 <- Minus
X 18114611..18114646 96..131 100 <- Minus
X 18116707..18116801 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:15:02 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105568..18106032 672..1136 100 <- Minus
X 18106681..18106822 530..671 100 <- Minus
X 18106888..18106931 486..529 100 <- Minus
X 18112562..18112662 385..485 100 <- Minus
X 18113258..18113381 261..384 100 <- Minus
X 18113447..18113575 132..260 100 <- Minus
X 18114611..18114646 96..131 100 <- Minus
X 18116707..18116801 1..95 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:15:02 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
X 18105568..18106032 672..1136 100 <- Minus
X 18106681..18106822 530..671 100 <- Minus
X 18106888..18106931 486..529 100 <- Minus
X 18112562..18112662 385..485 100 <- Minus
X 18113258..18113381 261..384 100 <- Minus
X 18113447..18113575 132..260 100 <- Minus
X 18114611..18114646 96..131 100 <- Minus
X 18116707..18116801 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:33:41 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17999601..18000065 672..1136 100 <- Minus
arm_X 18000714..18000855 530..671 100 <- Minus
arm_X 18000921..18000964 486..529 100 <- Minus
arm_X 18006595..18006695 385..485 100 <- Minus
arm_X 18007291..18007414 261..384 100 <- Minus
arm_X 18007480..18007608 132..260 100 <- Minus
arm_X 18008644..18008679 96..131 100 <- Minus
arm_X 18010740..18010834 1..95 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:52:14 Download gff for MIP21131.complete
Subject Subject Range Query Range Percent Splice Strand
X 18113666..18114130 672..1136 100 <- Minus
X 18114779..18114920 530..671 100 <- Minus
X 18114986..18115029 486..529 100 <- Minus
X 18120660..18120760 385..485 100 <- Minus
X 18121356..18121479 261..384 100 <- Minus
X 18121545..18121673 132..260 100 <- Minus
X 18122709..18122744 96..131 100 <- Minus
X 18124805..18124899 1..95 100   Minus

MIP21131.pep Sequence

Translation from 116 to 742

> MIP21131.pep
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEDTLKSLIKQHY
DRINKLEDQKYDLEYVVKRKDVEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*

MIP21131.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19521-PA 272 GF19521-PA 68..272 4..208 1008 98.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18142-PA 269 GG18142-PA 65..269 4..208 1019 99.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11970-PA 282 GH11970-PA 78..282 4..208 730 89.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PA 208 CG7178-PA 1..208 1..208 1041 100 Plus
wupA-PB 208 CG7178-PB 1..208 1..208 962 92.3 Plus
wupA-PF 208 CG7178-PF 1..208 1..208 941 90.4 Plus
wupA-PC 208 CG7178-PC 1..208 1..208 941 90.4 Plus
wupA-PE 208 CG7178-PE 1..208 1..208 933 90.4 Plus
wupA-PD 208 CG7178-PD 1..208 1..208 933 90.4 Plus
wupA-PJ 199 CG7178-PJ 1..187 1..187 928 100 Plus
wupA-PM 184 CG7178-PM 1..184 25..208 926 100 Plus
wupA-PL 184 CG7178-PL 1..184 25..208 926 100 Plus
wupA-PK 184 CG7178-PK 1..184 25..208 926 100 Plus
wupA-PG 269 CG7178-PG 65..269 4..208 922 89.8 Plus
wupA-PI 199 CG7178-PI 1..187 1..187 820 89.3 Plus
wupA-PH 260 CG7178-PH 65..248 4..187 809 88.6 Plus
up-PM 373 CG7107-PM 83..300 5..196 155 28.3 Plus
up-PL 388 CG7107-PL 98..315 5..196 155 29.1 Plus
up-PN 394 CG7107-PN 104..321 5..196 155 29.1 Plus
up-PK 396 CG7107-PK 106..323 5..196 155 29.1 Plus
up-PG 396 CG7107-PG 106..323 5..196 155 29.1 Plus
up-PT 306 CG7107-PT 15..233 5..196 154 29 Plus
up-PD 306 CG7107-PD 15..233 5..196 154 29 Plus
up-PH 374 CG7107-PH 83..301 5..196 154 28.1 Plus
up-PE 374 CG7107-PE 83..301 5..196 154 29 Plus
up-PQ 388 CG7107-PQ 97..315 5..196 154 29 Plus
up-PS 388 CG7107-PS 97..315 5..196 154 29 Plus
up-PR 388 CG7107-PR 97..315 5..196 154 29 Plus
up-PJ 389 CG7107-PJ 98..316 5..196 154 28.1 Plus
up-PB 389 CG7107-PB 98..316 5..196 154 29 Plus
up-PP 396 CG7107-PP 105..323 5..196 154 29 Plus
up-PO 397 CG7107-PO 106..324 5..196 154 29 Plus
up-PI 397 CG7107-PI 106..324 5..196 154 28.1 Plus
up-PA 397 CG7107-PA 106..324 5..196 154 29 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14711-PA 277 GI14711-PA 73..277 4..208 731 89.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14173-PA 267 GL14173-PA 63..267 4..208 721 89.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\TpnI-PA 267 GA22383-PA 63..267 4..208 721 89.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22835-PA 224 GM22835-PA 65..224 4..208 512 68.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24482-PA 98 GD24482-PA 13..97 6..90 393 98.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\wupA-PA 274 GJ16776-PA 70..274 4..208 731 89.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24919-PA 272 GK24919-PA 68..272 4..208 731 89.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\wupA-PA 270 GE15552-PA 66..270 4..208 724 89.8 Plus

MIP21131.hyp Sequence

Translation from 116 to 742

> MIP21131.hyp
MADDEAKKAKQAEIERKRAEVRKRMEEASKAKKAKKGFMTPERKKKLRLL
LRKKAAEELKKEQERKAAERRRIIEERCGSPRNLSDASEDTLKSLIKQHY
DRINKLEDQKYDLEYVVKRKDVEINDLNAQVNDLRGKFVKPALKKVSKYE
NKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEEKEKKPDWSKGKPGDAKV
KEEVEAEA*

MIP21131.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
wupA-PA 208 CG7178-PA 1..208 1..208 1041 100 Plus
wupA-PB 208 CG7178-PB 1..208 1..208 962 92.3 Plus
wupA-PF 208 CG7178-PF 1..208 1..208 941 90.4 Plus
wupA-PC 208 CG7178-PC 1..208 1..208 941 90.4 Plus
wupA-PE 208 CG7178-PE 1..208 1..208 933 90.4 Plus