Clone MIP21173 Report

Search the DGRC for MIP21173

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:211
Well:73
Vector:pOT2
Associated Gene/TranscriptCG4729-RE
Protein status:MIP21173.pep: gold
Sequenced Size:1880

Clone Sequence Records

MIP21173.complete Sequence

1880 bp assembled on 2010-04-12

GenBank Submission: BT124744.1

> MIP21173.complete
GGCACGACGCCGCCGAGTGATAACCATATAGTAGTGACCAGTGTTTAGCA
ACCGATTCCCGCCCAGTGACACTCGTAAACAAAGGGCACGACCGACAGTG
TCTGTATATATATGTGCATATGCGTAACAGGGAATAACCGATAAGAACGG
CGCAGCTGCAGATAGACATACCTTTAAATAGGACTTTGTTTATTGATCGT
TTGTGGGTGGCTATTGCCTTGCAGATCGCGAACTGATAACCATAAATGTT
AACCACGTCACGCCACCCCACGCCTCTCCCAAACACACACACTCGCACAC
GTGCGCCAGCTGAGCACATGCATACGTATATGCATGCTCACACGCACACA
ATCGCATGGTCGTGCACAAGAACTCTTTTGTTATCAAAATGGGTTCCCTG
GAGAAGCTGAAACAATTGAGACTGATACACCTGTGCATCGCGCTCACCTT
CTTTACCAGCGGGCTGTGCATCAACTTTATCCAGCTGCTGATGCACGTCT
TTATCAAGCCCATAGACAAGCGACTCTTCCGCAAGTTGATGTACTATGCC
TGCTATTCGCTTTACTCCCAACTTATCTTCGTGTCCGATTGGTATGCCGG
CAGCAAGATGACTGTCTACATGGACAAGGAGGACTTCGAGAAGCATGCCG
GCAAGGAACACGTCCTTCTGATCATGAACCATAAATACGAGATCGATTGG
CTCAACGGCTGGATGATCTGCGAAAAGTTGGGCGTGCTGGGCAACTGCAA
GGCCTATGCGAAGAAGGCAATCCGCTACGTGCCCATCATCGGCTGGGGCT
GGTGGCTGGCCGAGTTCGTCTTCCTCAATCGAAACTTCGACCAGGACAAG
ACCATCATCACCGAACAGCTCAAGGTGGTCTTCTCCTATCCCGATCCCAC
CTGGCTTTTGCTCAACGCCGAGGGCACTCGCTTCACTCCCGCCAAGCACG
AGGCATCCGTAAAATTCGCCCAGGAGAGGGGCATGACGGTGCTGAAGCAC
CATTTGATCCCGCGCACCAAGGGATTCACCGCCAGCTTGGCACCCATCCG
CGGTCTCTGTCCGGTAATCTACGACATTAATCTAGCGTACAGGCCCACAG
ATAAGACCCCCGCCACAATGCTGAGTTTGCTGCATGGAAAGAGCGTGGAA
CCGCACCTGCTGATGAGGCGTATTCCACTGGAACAGGTTCCGGAGGATGA
GAAGGAGGCGGCCGCCTGGCTGCAGAACCTGTTCGTGGAGAAGGACAAGA
TCATCGATAGCTTCCTGGAGACGGGCAGCTTCTTTAAGACGTCCGGCATA
AAGGAGGTTCCGGCATATGTGAATAAACGCCGGCTGTGCTCACTCGTGAA
CTTTGTCTGCTGGGCGGTATTCTCTCTGTCCTGCATTTTCTACTACGTGA
TCACATCCCTGCTGGCGGCCAACTGGACGGCCTTTATCACCGCACTTTCC
GTCCTGGGACTTTTTTACTGGCTCATGGGTCAGGCCATCAACAAGACGCA
GATCAGCAAGGCATCTAATTATGGATCCTCCAAGTCGGTCGCAAAGTAAC
TTTCGAATTCGCATTTAGTTTCGATTGTCGTCGAACTCAATTATCTACAA
ATGACTTTGTAAAAGGCAGTCCTCTCACAAATCTCTCTGCTAAATGGATC
AATTCGTGATTCCTATCCGGACGATTTAAAGTGTTTTGCATGTTTTTCTT
GTCTAAGTTTATAGTTACGAAGTAACTCCCGCACACTGGAGCCATCAATT
TGCGTACGTAGTTGGTAGTTGTACACCTAAGTGGAAATTTAATTGTTTGA
TCAATTGTATTTTGGCGAGCATTGCAATAATTAAATTAAACAGAACGTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP21173.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-RC 1713 CG4729-RC 209..1677 382..1850 7345 100 Plus
CG4729-RB 1681 CG4729-RB 206..1673 383..1850 7340 100 Plus
CG4729-RA 1804 CG4729-RA 197..1664 383..1850 7340 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16373086..16373621 1105..570 2635 99.4 Minus
chr3L 24539361 chr3L 16371527..16371912 1849..1464 1900 99.5 Minus
chr3L 24539361 chr3L 16372137..16372496 1463..1104 1800 100 Minus
chr3L 24539361 chr3L 16375183..16375583 382..1 1640 94.5 Minus
chr3L 24539361 chr3L 16373682..16373868 569..383 935 100 Minus
chr3L 24539361 chr3L 16369471..16369905 1083..649 540 74.9 Minus
chr3L 24539361 chr3L 16369174..16369307 1308..1175 325 82.8 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:23:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16383331..16383866 1105..570 2680 100 Minus
3L 28110227 3L 16381771..16382157 1850..1464 1935 100 Minus
3L 28110227 3L 16385428..16385809 382..1 1910 100 Minus
3L 28110227 3L 16382382..16382741 1463..1104 1800 100 Minus
3L 28110227 3L 16383927..16384113 569..383 935 100 Minus
3L 28110227 3L 16379722..16380156 1083..649 540 74.9 Minus
3L 28110227 3L 16379425..16379558 1308..1175 325 82.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16376431..16376966 1105..570 2680 100 Minus
3L 28103327 3L 16374871..16375257 1850..1464 1935 100 Minus
3L 28103327 3L 16378528..16378909 382..1 1910 100 Minus
3L 28103327 3L 16375482..16375841 1463..1104 1800 100 Minus
3L 28103327 3L 16377027..16377213 569..383 935 100 Minus
3L 28103327 3L 16372525..16372658 1308..1175 325 82.8 Minus
3L 28103327 3L 16373055..16373256 850..649 260 75.2 Minus
3L 28103327 3L 16372929..16373039 976..866 240 81 Minus
3L 28103327 3L 16372822..16372910 1083..995 175 79.7 Minus
Blast to na_te.dros performed on 2019-03-16 18:40:09 has no hits.

MIP21173.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:40:52 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16373682..16373868 383..569 100 <- Minus
chr3L 16371527..16371912 1464..1849 99 <- Minus
chr3L 16372137..16372494 1106..1463 100 <- Minus
chr3L 16373086..16373621 570..1105 99 <- Minus
chr3L 16375183..16375466 100..382 98 <- Minus
chr3L 16375485..16375583 1..99 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-19 15:45:20 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 1..1161 389..1549 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:55:10 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RB 1..1161 389..1549 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:23:32 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 1..1194 356..1549 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:46:00 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 1..1194 356..1549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 15:45:20 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 203..1676 375..1849 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:55:10 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RC 203..1676 375..1849 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:32 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 1..1849 1..1849 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:46:00 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
CG4729-RE 1..1849 1..1849 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:52 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16381772..16382157 1464..1849 100 <- Minus
3L 16382382..16382739 1106..1463 100 <- Minus
3L 16383331..16383866 570..1105 100 <- Minus
3L 16383927..16384113 383..569 100 <- Minus
3L 16385428..16385809 1..382 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:52 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16381772..16382157 1464..1849 100 <- Minus
3L 16382382..16382739 1106..1463 100 <- Minus
3L 16383331..16383866 570..1105 100 <- Minus
3L 16383927..16384113 383..569 100 <- Minus
3L 16385428..16385809 1..382 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:40:52 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16381772..16382157 1464..1849 100 <- Minus
3L 16382382..16382739 1106..1463 100 <- Minus
3L 16383331..16383866 570..1105 100 <- Minus
3L 16383927..16384113 383..569 100 <- Minus
3L 16385428..16385809 1..382 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:32 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16374872..16375257 1464..1849 100 <- Minus
arm_3L 16375482..16375839 1106..1463 100 <- Minus
arm_3L 16376431..16376966 570..1105 100 <- Minus
arm_3L 16377027..16377213 383..569 100 <- Minus
arm_3L 16378528..16378909 1..382 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:46:42 Download gff for MIP21173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16374872..16375257 1464..1849 100 <- Minus
3L 16375482..16375839 1106..1463 100 <- Minus
3L 16376431..16376966 570..1105 100 <- Minus
3L 16377027..16377213 383..569 100 <- Minus
3L 16378528..16378909 1..382 100   Minus

MIP21173.hyp Sequence

Translation from 355 to 1548

> MIP21173.hyp
MVVHKNSFVIKMGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFI
KPIDKRLFRKLMYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGK
EHVLLIMNHKYEIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWW
LAEFVFLNRNFDQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEA
SVKFAQERGMTVLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDK
TPATMLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKII
DSFLETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVIT
SLLAANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*

MIP21173.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4729-PE 397 CG4729-PE 1..397 1..397 2098 100 Plus
CG4729-PB 386 CG4729-PB 1..386 12..397 2043 100 Plus
CG4729-PC 386 CG4729-PC 1..386 12..397 2043 100 Plus
CG4729-PA 386 CG4729-PA 1..386 12..397 2043 100 Plus
CG4753-PC 380 CG4753-PC 10..376 26..392 1268 62.7 Plus

MIP21173.pep Sequence

Translation from 355 to 1548

> MIP21173.pep
MVVHKNSFVIKMGSLEKLKQLRLIHLCIALTFFTSGLCINFIQLLMHVFI
KPIDKRLFRKLMYYACYSLYSQLIFVSDWYAGSKMTVYMDKEDFEKHAGK
EHVLLIMNHKYEIDWLNGWMICEKLGVLGNCKAYAKKAIRYVPIIGWGWW
LAEFVFLNRNFDQDKTIITEQLKVVFSYPDPTWLLLNAEGTRFTPAKHEA
SVKFAQERGMTVLKHHLIPRTKGFTASLAPIRGLCPVIYDINLAYRPTDK
TPATMLSLLHGKSVEPHLLMRRIPLEQVPEDEKEAAAWLQNLFVEKDKII
DSFLETGSFFKTSGIKEVPAYVNKRRLCSLVNFVCWAVFSLSCIFYYVIT
SLLAANWTAFITALSVLGLFYWLMGQAINKTQISKASNYGSSKSVAK*

MIP21173.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10214-PA 386 GF10214-PA 1..386 12..397 1910 90.9 Plus
Dana\GF10215-PA 379 GF10215-PA 7..376 23..392 1279 63 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:56:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13455-PA 387 GG13455-PA 1..382 12..393 2044 99 Plus
Dere\GG13456-PA 379 GG13456-PA 1..376 18..392 1292 62.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15594-PA 387 GH15594-PA 1..380 12..391 1618 76.8 Plus
Dgri\GH15593-PA 383 GH15593-PA 3..380 17..394 1220 58.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
Agpat3-PE 397 CG4729-PE 1..397 1..397 2098 100 Plus
Agpat3-PB 386 CG4729-PB 1..386 12..397 2043 100 Plus
Agpat3-PC 386 CG4729-PC 1..386 12..397 2043 100 Plus
Agpat3-PA 386 CG4729-PA 1..386 12..397 2043 100 Plus
Agpat4-PC 380 CG4753-PC 10..376 26..392 1268 62.7 Plus
Agpat4-PA 380 CG4753-PA 10..376 26..392 1268 62.7 Plus
Agpat4-PB 380 CG4753-PB 10..376 26..392 1268 62.7 Plus
Agpat3-PD 143 CG4729-PD 1..143 255..397 734 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16871-PA 388 GI16871-PA 1..383 12..394 1642 77.3 Plus
Dmoj\GI16870-PA 387 GI16870-PA 1..385 12..397 1120 53.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17998-PA 389 GL17998-PA 1..383 12..394 1852 88 Plus
Dper\GL17999-PA 383 GL17999-PA 1..383 12..397 1338 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18389-PA 389 GA18389-PA 1..383 12..394 1845 87.7 Plus
Dpse\GA18406-PA 383 GA18406-PA 1..383 12..397 1338 62.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24405-PA 386 GM24405-PA 1..386 12..397 2055 99 Plus
Dsec\GM24407-PA 378 GM24407-PA 1..377 18..393 1272 61.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12474-PA 386 GD12474-PA 1..386 12..397 2065 99.5 Plus
Dsim\GD12475-PA 380 GD12475-PA 1..367 18..383 1243 61.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12621-PA 388 GJ12621-PA 1..383 12..394 1608 76.2 Plus
Dvir\GJ12620-PA 337 GJ12620-PA 1..335 62..397 1140 59.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20785-PA 395 GK20785-PA 1..386 12..396 1711 80.3 Plus
Dwil\GK20796-PA 382 GK20796-PA 2..378 18..394 1398 66.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:57:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22556-PA 387 GE22556-PA 1..383 12..394 2051 99.2 Plus
Dyak\GE22903-PA 387 GE22903-PA 1..383 12..394 2051 99.2 Plus
Dyak\GE22557-PA 379 GE22557-PA 1..376 18..392 1269 62 Plus
Dyak\GE22904-PA 379 GE22904-PA 1..376 18..392 1268 62 Plus