Clone MIP21537 Report

Search the DGRC for MIP21537

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:215
Well:37
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG5707-RB
Protein status:MIP21537.pep: gold
Sequenced Size:1676

Clone Sequence Records

MIP21537.complete Sequence

1676 bp assembled on 2010-05-07

GenBank Submission: BT124887.1

> MIP21537.complete
CACTTCTCTTCGGCTCGATCTCGCTAGTGTTCAACTAATTTAGTTAGTGC
AGTATAAAAATAGAAAAGTTTCCCACAACACCTTGCGTATATATTTTCCG
ACACGGCGTGTGTCGGAATTAGTTGGGATTTAGATTGTATTATTCACCGA
GATTGCCAACTAAAATGACATCGAATTCCGAAGGTCGAGGCAACCCCATC
GAGACGCATGAACAGTTGAAAGTGCTCGGCGCTAATTTTCAAGTTGAGCG
ACCGTGCTAAACCGAGCTCGGAAAAAGTTTCTCTGTGGTGGCAAACTACG
AAAATCCATTTGTTCGAACTTTGCGGGGTTTGCATGTGCAGCATCAGTCA
ATTGCAGTGGATACACAATCGCTTATCGATTGGAGCCCAAAACAAAGAGC
CCATGGACGTGCGCATCGACATGCCGTGGGGTTATGTGGTGGGCAAGTGG
TACGGCAATCGGCAGGTACGACCCATCCTGGCGCTGCATGGCTGGCTGGA
CAACCTGGGCACGTGGGACAAATTGCTGCCCCTGCTACCGAAGCACCTGG
GAGTGCTGTGCATCGACCTGCCCGGCCACGGATACTCCTCGAAGCTGCCC
GAGGGGATTGCCTACCACTTCGTGGACTACCTGTGCGTGATCCTGCGCGT
AATGGAGGAGTACCGCTGGCAGAAGGTGTCCCTGATGGCCCACTCAATGA
GCGCCATGCTGTGCTTCGTATTCGCTTCGCTGTACCCACATCGCACCGAC
ATGTTGGTCAGCATAGATATAGTGAAGACCCGCTATAGGAAGCCCCCCTC
GCAGATCGACTATCTGCGCAAGAACATCGAGGGCTACATTGTGGAGGACG
AGCGATTTGCGAATTCCAAGCGCCAGGAGCCGCCGGCCTATACCTACACA
GAGATGGAGCAGGTCCTGTACAAAGGCACCGACTACTCGGTGGAGCTGGA
GAACTGCCGCCACATCCTGGAGCGCAACATCAGCCGTTCCACCAAGTTCC
CGGCCAAGTTCTTCTTCTCGCGCGACGGTCGCTGCAAGTACTACACGGAG
TTCCATACGAGTCCTCCCTTCGCCGCTGAACTGGCCAGGACCATCAAGAA
TGTGCCCTACTGCGTGATCAAGGGCTCCGAGTCGAACTACATAGACGAGC
AGAGCGACGAGGTGATTGGCATCCTCAGGGAGAACAACCCGCACTTCGAG
CTCCACGAAGTGCAGGGCACCCACCACGTTCACCTCAACAATGCGCAGGG
TGTGGCGGCCGTCATTAATCCCTTCATTCTGCACCACCGCCCACCGCATC
TGGAGAACTGGACGGTGGACGGGACGGATGAGACGCTGCCCGAGGTCGTC
AAGGAATTCAAGTTGGCCGTGGAGGATTCAGAGAATGTCAAGCGGAGGAA
GAGAAAAAGCAACCTATAGCTGCTGCCAGCATCTCTGAGATTCAGTCAGC
AGCGCGATGCGAAAATTTCCGATGCGAAACAAGATATTGATTTCATTATG
CCGACGTGATGCTTTCTTCAAGCCTTAACGCTTTAGAGTAATAATATAGA
CAATTTTATACGATGTTCAAGATCCTAACAAGTTGGATAGATACTTTGCT
TGTACTAAGTATTCTAACAATAAATAATGTTTGATTTAATTAAAACCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

MIP21537.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707.a 1322 CG5707.a 1..1321 328..1648 6605 100 Plus
CG5707-RA 1614 CG5707-RA 354..1605 397..1648 6260 100 Plus
CG5707-RA 1614 CG5707-RA 139..353 1..215 1075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 09:01:12
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2188590..2189840 1647..397 6105 99.2 Minus
chr3L 24539361 chr3L 2191370..2191584 215..1 1030 98.6 Minus
chr3L 24539361 chr3L 2190571..2190756 397..212 915 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2189159..2190410 1648..397 6260 100 Minus
3L 28110227 3L 2191940..2192154 215..1 1075 100 Minus
3L 28110227 3L 2191141..2191326 397..212 930 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2189159..2190410 1648..397 6260 100 Minus
3L 28103327 3L 2191940..2192154 215..1 1075 100 Minus
3L 28103327 3L 2191141..2191326 397..212 930 100 Minus
Blast to na_te.dros performed on 2019-03-16 09:01:11 has no hits.

MIP21537.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 09:01:59 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2188590..2189840 397..1647 99 <- Minus
chr3L 2190572..2190752 216..396 99 <- Minus
chr3L 2191370..2191584 1..215 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-05-07 14:09:47 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 47..1074 391..1419 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:35:44 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 47..1074 391..1419 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:56:10 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RB 1..1086 334..1419 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:56:44 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RB 1..1086 334..1419 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-07 14:09:47 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 27..236 1..210 100 == Plus
CG5707-RA 237..1492 391..1647 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:35:44 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RA 27..236 1..210 100 == Plus
CG5707-RA 237..1492 391..1647 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:56:10 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RC 68..1714 1..1647 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:56:44 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
CG5707-RC 68..1714 1..1647 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:59 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2189160..2190410 397..1647 100 <- Minus
3L 2191142..2191322 216..396 100 <- Minus
3L 2191940..2192154 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:59 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2189160..2190410 397..1647 100 <- Minus
3L 2191142..2191322 216..396 100 <- Minus
3L 2191940..2192154 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 09:01:59 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2189160..2190410 397..1647 100 <- Minus
3L 2191142..2191322 216..396 100 <- Minus
3L 2191940..2192154 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:56:10 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2189160..2190410 397..1647 100 <- Minus
arm_3L 2191142..2191322 216..396 100 <- Minus
arm_3L 2191940..2192154 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:09:13 Download gff for MIP21537.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2189160..2190410 397..1647 100 <- Minus
3L 2191142..2191322 216..396 100 <- Minus
3L 2191940..2192154 1..215 100   Minus

MIP21537.hyp Sequence

Translation from 228 to 1313

> MIP21537.hyp
MCSISQLQWIHNRLSIGAQNKEPMDVRIDMPWGYVVGKWYGNRQVRPILA
LHGWLDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYL
CVILRVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTR
YRKPPSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTD
YSVELENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAEL
ARTIKNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVH
LNNAQGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSE
NVKRRKRKSNL*

MIP21537.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:39:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PC 361 CG5707-PC 1..361 1..361 1950 100 Plus
CG5707-PB 361 CG5707-PB 1..361 1..361 1950 100 Plus
CG5707-PA 357 CG5707-PA 12..357 16..361 1841 98.6 Plus
CG15879-PA 342 CG15879-PA 8..319 25..335 877 49.7 Plus
CG5704-PB 335 CG5704-PB 12..316 26..333 799 49.2 Plus

MIP21537.pep Sequence

Translation from 333 to 1418

> MIP21537.pep
MCSISQLQWIHNRLSIGAQNKEPMDVRIDMPWGYVVGKWYGNRQVRPILA
LHGWLDNLGTWDKLLPLLPKHLGVLCIDLPGHGYSSKLPEGIAYHFVDYL
CVILRVMEEYRWQKVSLMAHSMSAMLCFVFASLYPHRTDMLVSIDIVKTR
YRKPPSQIDYLRKNIEGYIVEDERFANSKRQEPPAYTYTEMEQVLYKGTD
YSVELENCRHILERNISRSTKFPAKFFFSRDGRCKYYTEFHTSPPFAAEL
ARTIKNVPYCVIKGSESNYIDEQSDEVIGILRENNPHFELHEVQGTHHVH
LNNAQGVAAVINPFILHHRPPHLENWTVDGTDETLPEVVKEFKLAVEDSE
NVKRRKRKSNL*

MIP21537.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24930-PA 362 GF24930-PA 15..362 19..361 1708 89.4 Plus
Dana\GF24933-PA 344 GF24933-PA 12..320 26..332 812 47.2 Plus
Dana\GF24932-PA 342 GF24932-PA 11..341 25..356 809 46.4 Plus
Dana\GF24931-PA 315 GF24931-PA 6..298 24..319 736 45.8 Plus
Dana\GF24201-PA 348 GF24201-PA 37..330 25..320 701 43.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14529-PA 357 GG14529-PA 12..357 16..361 1700 92.8 Plus
Dere\GG14532-PA 344 GG14532-PA 11..321 25..335 832 47.9 Plus
Dere\GG14531-PA 335 GG14531-PA 12..318 26..335 811 49.2 Plus
Dere\GG14530-PA 314 GG14530-PA 4..309 14..321 806 48.2 Plus
Dere\GG13244-PA 349 GG13244-PA 38..331 25..320 723 46 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16485-PA 353 GH16485-PA 9..353 12..361 1554 80 Plus
Dgri\GH16488-PA 343 GH16488-PA 11..322 25..337 872 49.8 Plus
Dgri\GH23210-PA 318 GH23210-PA 11..306 25..321 778 48.2 Plus
Dgri\GH16489-PA 318 GH16489-PA 11..306 25..321 778 48.2 Plus
Dgri\GH16159-PA 359 GH16159-PA 37..341 14..320 720 44.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5707-PC 361 CG5707-PC 1..361 1..361 1950 100 Plus
CG5707-PB 361 CG5707-PB 1..361 1..361 1950 100 Plus
CG5707-PA 357 CG5707-PA 12..357 16..361 1841 98.6 Plus
CG15879-PA 342 CG15879-PA 8..319 25..335 877 49.7 Plus
CG5704-PB 335 CG5704-PB 12..316 26..333 799 49.2 Plus
CG5704-PA 335 CG5704-PA 12..316 26..333 799 49.2 Plus
CG15820-PA 308 CG15820-PA 9..303 25..321 783 48 Plus
CG11309-PA 358 CG11309-PA 35..340 13..320 731 44.5 Plus
CG11309-PF 348 CG11309-PF 37..330 25..320 726 45.3 Plus
CG11309-PE 348 CG11309-PE 37..330 25..320 726 45.3 Plus
CG11309-PD 348 CG11309-PD 37..330 25..320 726 45.3 Plus
CG11309-PC 348 CG11309-PC 37..330 25..320 726 45.3 Plus
CG11309-PB 348 CG11309-PB 37..330 25..320 726 45.3 Plus
CG7632-PA 330 CG7632-PA 31..329 20..320 683 44.8 Plus
CG7632-PB 312 CG7632-PB 18..311 25..320 679 44.9 Plus
kraken-PB 331 CG3943-PB 44..328 28..315 404 34.5 Plus
kraken-PA 331 CG3943-PA 44..328 28..315 404 34.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12158-PA 395 GI12158-PA 56..395 21..361 1594 83.9 Plus
Dmoj\GI12160-PA 342 GI12160-PA 11..315 25..330 883 51 Plus
Dmoj\GI12161-PA 343 GI12161-PA 11..320 25..335 834 48.2 Plus
Dmoj\GI12011-PA 336 GI12011-PA 32..335 15..320 719 45.5 Plus
Dmoj\GI13311-PA 352 GI13311-PA 41..334 25..320 687 44.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24626-PA 348 GL24626-PA 11..348 25..361 875 50 Plus
Dper\GL24627-PA 331 GL24627-PA 11..310 25..325 780 49.3 Plus
Dper\GL24589-PA 348 GL24589-PA 37..330 25..320 711 45 Plus
Dper\GL24680-PA 330 GL24680-PA 36..329 25..320 680 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19073-PA 365 GA19073-PA 19..365 16..361 1634 85 Plus
Dpse\GA23367-PA 348 GA23367-PA 11..348 25..361 891 50.9 Plus
Dpse\GA23368-PA 332 GA23368-PA 11..310 25..325 773 48.7 Plus
Dpse\GA10906-PA 348 GA10906-PA 37..330 25..320 711 45 Plus
Dpse\GA20494-PA 330 GA20494-PA 36..329 25..320 679 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14135-PA 300 GM14135-PA 17..300 21..361 1235 74.5 Plus
Dsec\GM14139-PA 345 GM14139-PA 11..322 25..335 858 49 Plus
Dsec\GM14136-PA 308 GM14136-PA 9..303 25..321 791 48.7 Plus
Dsec\GM26924-PA 355 GM22149-PA 40..337 22..320 718 45 Plus
Dsec\GM14137-PA 323 GM14137-PA 16..313 25..321 704 43.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13405-PA 357 GD13405-PA 17..357 21..361 1707 94.7 Plus
Dsim\GD13410-PA 345 GD13410-PA 11..322 25..335 856 49 Plus
Dsim\GD13408-PA 335 GD13408-PA 12..316 26..333 811 49.8 Plus
Dsim\GD13406-PA 308 GD13406-PA 9..303 25..321 793 48.7 Plus
Dsim\GD12125-PA 360 GD12125-PA 49..342 25..320 720 45.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13437-PA 357 GJ13437-PA 16..357 19..361 1583 82.5 Plus
Dvir\GJ11632-PA 343 GJ11632-PA 11..339 25..354 876 48.5 Plus
Dvir\GJ13440-PA 343 GJ13440-PA 11..343 25..361 867 47.2 Plus
Dvir\GJ13439-PA 340 GJ13439-PA 11..331 25..348 861 49.1 Plus
Dvir\GJ12081-PA 357 GJ12081-PA 46..339 25..320 709 45.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12598-PA 358 GK12598-PA 11..358 16..361 1580 84.8 Plus
Dwil\GK12602-PA 346 GK12602-PA 11..319 25..333 874 50.5 Plus
Dwil\GK20424-PA 352 GK20424-PA 29..333 14..320 707 44 Plus
Dwil\GK20467-PA 335 GK20467-PA 41..334 25..320 664 43.9 Plus
Dwil\GK24439-PA 338 GK24439-PA 35..335 14..315 431 34.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20878-PA 357 GE20878-PA 11..357 15..361 1711 93.1 Plus
Dyak\GE20884-PA 341 GE20884-PA 8..318 25..335 867 48.9 Plus
Dyak\GE20883-PA 335 GE20883-PA 12..318 26..335 818 50.5 Plus
Dyak\GE20881-PA 314 GE20881-PA 4..310 14..322 794 47.4 Plus
Dyak\GE22964-PA 348 GE22964-PA 37..330 25..320 716 45.3 Plus