Clone MIP21565 Report

Search the DGRC for MIP21565

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:215
Well:65
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptUbcD6-RE
Protein status:MIP21565.pep: wuzgold
Sequenced Size:1086

Clone Sequence Records

MIP21565.complete Sequence

1086 bp assembled on 2010-06-03

GenBank Submission: BT124994.1

> MIP21565.complete
ACAAAACGAAAGCAAAGGAAAACAGGAAGGCAAGGAGCGAATGGCAAAAC
TTCAAGAGGATCCACCTACGGGTGTCTCGGGTGCTCCAACAGATAATAAT
ATTATGATATGGAATGCTGTGATTTTTGGTCCACACGACACACCCTTCGA
AGACGGAACATTTAAGTTAACCATAGAATTTACGGAAGAGTACCCAAACA
AACCGCCAACGGTTCGATTTGTATCGAAAGTATTTCATCCCAATGTATAC
GCAGATGGTGGAATATGCTTGGACATATTGCAGAACCGCTGGAGTCCCAC
GTACGATGTGTCAGCCATATTAACATCCATACAGTCACTGCTGAGCGATC
CCAATCCCAACTCACCGGCTAACTCCACCGCCGCCCAGCTGTATAAAGAA
AATCGGCGCGAGTACGAGAAGCGTGTGAAAGCCTGCGTTGAGCAGAGTTT
CATCGATTAGCCATGCGCCCACTTTAGGAACAGCAGCAGCATCAGGAGCC
GGAGCCACAAAACGAGCGGCAGCAGTTTAGTAGGCGACCGCAGCTTAAAG
CATCAGCAAACTACAGTAACAGAAATATGCAATACCATAAAGAAGTTTAA
ATTAAATAATAACAGAAATATTTATGATAATTGTAATGCTATGAAATTGT
AACACCGCCAACGGCACGGCACAGCAGCATATATACACCCTGCGCACACA
ATTCGCAACCCATAAATACTGGGCAGTTTTGAGTTATATTTGTTTGGCCA
ATAGTTACACCTTGTCCCCAGCCCGATCACCCGATCCCGAAGGCAGACGC
AATTCACTTAAAAAATTAGGAAGTCCTCTATGGATGCAGCCGCTAGTTGC
GCCGGCAGCCAGAAATAAGACTCTTATAAGCTAAAAACTCAAATGTTCTA
ATTTAAAAAAGCAGCGGCAATAATGTTTAATAATAAAACAAAAATTATAA
AAACCATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP21565.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
UbcD6.b 2005 UbcD6.b 22..983 1..962 4810 100 Plus
UbcD6-RA 2321 UbcD6-RA 365..1278 49..962 4570 100 Plus
UbcD6-RB 2023 UbcD6-RB 88..1001 49..962 4570 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 775460..776088 960..332 3145 100 Minus
chr3R 27901430 chr3R 776148..776433 334..49 1430 100 Minus
chr3R 27901430 chr3R 778041..778088 48..1 240 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4949777..4950407 962..332 3155 100 Minus
3R 32079331 3R 4950467..4950752 334..49 1430 100 Minus
3R 32079331 3R 4952360..4952407 48..1 240 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4690608..4691238 962..332 3155 100 Minus
3R 31820162 3R 4691298..4691583 334..49 1430 100 Minus
3R 31820162 3R 4693191..4693238 48..1 240 100 Minus
Blast to na_te.dros performed 2019-03-16 17:45:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4507..4658 476..619 166 60.1 Plus
Dvir\Uvir 6564 Dvir\Uvir VIRUVIR 6564bp 4540..4704 479..641 162 57 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6804..6901 476..569 156 69.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..6901 479..591 152 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6753..6904 479..620 149 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2344..2450 479..590 140 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6830 479..579 139 65 Plus
roo 9092 roo DM_ROO 9092bp 8435..8529 563..652 139 64.2 Plus
roo 9092 roo DM_ROO 9092bp 1080..1264 479..654 120 57.4 Plus
TART-A 13424 TART-A 13424bp 7745..7857 7..114 120 62.6 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 918..1002 552..636 110 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2474 476..594 109 61.5 Plus

MIP21565.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:36 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 775496..776085 335..924 100 <- Minus
chr3R 776148..776433 49..334 100 <- Minus
chr3R 778041..778088 1..48 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-06-03 19:49:59 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RA 41..456 46..460 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 22:00:54 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RA 41..456 46..460 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:37:48 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RE 1..420 41..460 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:17:46 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc6-RA 41..456 46..460 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-03 19:49:59 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RA 229..1144 46..960 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 22:00:54 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RB 82..999 43..960 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:48 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RE 1..960 1..960 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:17:46 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
Ubc6-RA 227..1142 46..960 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:36 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4949779..4950404 335..960 100 <- Minus
3R 4950467..4950752 49..334 100 <- Minus
3R 4952360..4952407 1..48 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:36 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4949779..4950404 335..960 100 <- Minus
3R 4950467..4950752 49..334 100 <- Minus
3R 4952360..4952407 1..48 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:36 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4949779..4950404 335..960 100 <- Minus
3R 4950467..4950752 49..334 100 <- Minus
3R 4952360..4952407 1..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:48 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 775501..776126 335..960 100 <- Minus
arm_3R 776189..776474 49..334 100 <- Minus
arm_3R 778082..778129 1..48 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:38:37 Download gff for MIP21565.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4690610..4691235 335..960 100 <- Minus
3R 4691298..4691583 49..334 100 <- Minus
3R 4693191..4693238 1..48 100   Minus

MIP21565.hyp Sequence

Translation from 0 to 459

> MIP21565.hyp
QNESKGKQEGKERMAKLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFE
DGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPT
YDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSF
ID*

MIP21565.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc6-PC 151 CG2013-PC 15..151 16..152 732 99.3 Plus
Ubc6-PA 151 CG2013-PA 15..151 16..152 732 99.3 Plus
eff-PC 147 CG7425-PC 8..136 12..140 326 43.4 Plus
eff-PB 147 CG7425-PB 8..136 12..140 326 43.4 Plus
eff-PA 147 CG7425-PA 8..136 12..140 326 43.4 Plus

MIP21565.pep Sequence

Translation from 1 to 459

> MIP21565.pep
QNESKGKQEGKERMAKLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFE
DGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPT
YDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQSF
ID*

MIP21565.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16080-PA 151 GF16080-PA 15..151 16..152 736 99.3 Plus
Dana\GF18131-PA 147 GF18131-PA 4..139 7..143 328 43.1 Plus
Dana\GF10262-PA 350 GF10262-PA 185..317 11..143 321 43.6 Plus
Dana\GF19231-PA 151 GF19231-PA 14..135 16..137 311 43.4 Plus
Dana\GF18145-PA 167 GF18145-PA 11..163 11..149 302 38.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11277-PA 151 GG11277-PA 15..151 16..152 736 99.3 Plus
Dere\GG24249-PA 151 GG24249-PA 14..132 16..134 332 47.9 Plus
Dere\GG21088-PA 147 GG21088-PA 4..139 7..143 328 43.1 Plus
Dere\GG17819-PA 151 GG17819-PA 14..135 16..137 311 43.4 Plus
Dere\GG15578-PA 178 GG15578-PA 30..174 2..148 302 40.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:13:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15302-PA 151 GH15302-PA 15..151 16..152 736 99.3 Plus
Dgri\GH14086-PA 147 GH14086-PA 4..139 7..143 328 43.1 Plus
Dgri\GH22592-PA 151 GH22592-PA 14..135 16..137 313 44.3 Plus
Dgri\GH17677-PA 151 GH17677-PA 14..135 16..137 310 43.4 Plus
Dgri\GH14044-PA 167 GH14044-PA 11..163 11..149 298 37.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Ubc6-PC 151 CG2013-PC 15..151 16..152 732 99.3 Plus
Ubc6-PA 151 CG2013-PA 15..151 16..152 732 99.3 Plus
eff-PC 147 CG7425-PC 8..136 12..140 326 43.4 Plus
eff-PB 147 CG7425-PB 8..136 12..140 326 43.4 Plus
eff-PA 147 CG7425-PA 8..136 12..140 326 43.4 Plus
CG3473-PB 151 CG3473-PB 14..143 16..145 322 44.6 Plus
CG3473-PA 151 CG3473-PA 14..143 16..145 322 44.6 Plus
ben-PE 151 CG18319-PE 14..135 16..137 314 43.4 Plus
ben-PD 151 CG18319-PD 14..135 16..137 314 43.4 Plus
ben-PB 151 CG18319-PB 14..135 16..137 314 43.4 Plus
ben-PC 151 CG18319-PC 14..135 16..137 314 43.4 Plus
ben-PA 151 CG18319-PA 14..135 16..137 314 43.4 Plus
CG40045-PA 168 CG40045-PA 11..163 11..149 294 37.3 Plus
Ubc87F-PA 168 CG9602-PA 13..163 13..149 293 38.4 Plus
vih-PA 178 CG10682-PA 30..174 2..148 293 40.8 Plus
lwr-PD 159 CG3018-PD 10..150 10..144 288 42.3 Plus
lwr-PC 159 CG3018-PC 10..150 10..144 288 42.3 Plus
lwr-PB 159 CG3018-PB 10..150 10..144 288 42.3 Plus
lwr-PA 159 CG3018-PA 10..150 10..144 288 42.3 Plus
CG5440-PC 169 CG5440-PC 27..159 11..143 287 40.6 Plus
CG5440-PB 169 CG5440-PB 27..159 11..143 287 40.6 Plus
Ubc2-PD 232 CG6720-PD 92..221 11..140 285 40.8 Plus
Ubc2-PC 232 CG6720-PC 92..221 11..140 285 40.8 Plus
Ubc2-PB 232 CG6720-PB 92..221 11..140 285 40.8 Plus
Ubc2-PA 232 CG6720-PA 92..221 11..140 285 40.8 Plus
CG40045-PD 167 CG40045-PD 11..162 11..149 282 37.3 Plus
CG7656-PF 317 CG7656-PF 52..184 17..135 270 41.4 Plus
CG7656-PA 317 CG7656-PA 52..184 17..135 270 41.4 Plus
CG7656-PE 319 CG7656-PE 52..184 17..135 270 41.4 Plus
CG7656-PD 319 CG7656-PD 52..184 17..135 270 41.4 Plus
CG10862-PA 354 CG10862-PA 214..346 11..143 270 37.6 Plus
Ubc7-PB 167 CG4443-PB 15..162 16..149 266 36.5 Plus
Ubc7-PA 167 CG4443-PA 15..162 16..149 266 36.5 Plus
CG2574-PA 239 CG2574-PA 68..197 11..140 261 36.9 Plus
UbcE2M-PC 181 CG7375-PC 15..176 3..152 255 32.5 Plus
UbcE2M-PB 181 CG7375-PB 15..176 3..152 255 32.5 Plus
UbcE2M-PA 181 CG7375-PA 15..176 3..152 255 32.5 Plus
morgue-PA 491 CG15437-PA 356..477 24..144 250 41 Plus
CG8188-PD 209 CG8188-PD 9..156 3..147 239 33.1 Plus
CG8188-PC 209 CG8188-PC 9..156 3..147 239 33.1 Plus
CG8188-PB 209 CG8188-PB 9..156 3..147 239 33.1 Plus
CG8188-PA 209 CG8188-PA 9..156 3..147 239 33.1 Plus
CG40045-PC 132 CG40045-PC 1..127 35..149 232 35.9 Plus
UbcE2H-PB 183 CG2257-PB 39..147 42..148 230 39.4 Plus
UbcE2H-PC 183 CG2257-PC 39..147 42..148 230 39.4 Plus
UbcE2H-PA 183 CG2257-PA 39..147 42..148 230 39.4 Plus
Ubc4-PC 199 CG8284-PC 43..136 41..133 215 41.5 Plus
Ubc4-PB 199 CG8284-PB 43..136 41..133 215 41.5 Plus
Ubc4-PA 199 CG8284-PA 43..136 41..133 215 41.5 Plus
Ubc10-PA 154 CG5788-PA 29..141 31..143 206 29.8 Plus
Ubc84D-PA 153 CG12799-PA 28..142 30..147 193 31.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22506-PA 151 GI22506-PA 15..151 16..152 736 99.3 Plus
Dmoj\GI10619-PA 147 GI10619-PA 4..139 7..143 328 43.1 Plus
Dmoj\GI22711-PA 151 GI22711-PA 14..135 16..137 313 44.3 Plus
Dmoj\GI21493-PA 151 GI21493-PA 14..135 16..137 307 43.4 Plus
Dmoj\GI24418-PA 167 GI24418-PA 11..163 11..149 301 38.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22213-PA 151 GL22213-PA 15..151 16..152 736 99.3 Plus
Dper\GL22792-PA 285 GL22792-PA 134..270 6..143 349 46.4 Plus
Dper\GL22790-PA 285 GL22790-PA 134..270 6..143 349 46.4 Plus
Dper\GL14576-PA 282 GL14576-PA 134..270 6..143 342 45.7 Plus
Dper\GL22516-PA 220 GL22516-PA 69..200 11..143 340 45.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:13:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15184-PA 151 GA15184-PA 15..151 16..152 736 99.3 Plus
Dpse\GA15184-PB 118 GA15184-PB 1..118 35..152 637 100 Plus
Dpse\GA23419-PA 176 GA23419-PA 25..161 6..143 352 46.4 Plus
Dpse\GA23422-PA 336 GA23422-PA 185..321 6..143 351 46.4 Plus
Dpse\GA25195-PA 170 GA25195-PA 22..158 6..143 345 45.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10669-PA 151 GM10669-PA 15..151 16..152 736 99.3 Plus
Dsec\GM16552-PA 151 GM16552-PA 14..143 16..145 329 44.6 Plus
Dsec\GM14762-PA 151 GM14762-PA 14..143 16..145 329 44.6 Plus
Dsec\GM25828-PA 147 GM25828-PA 4..139 7..143 328 43.1 Plus
Dsec\GM17649-PA 151 GM17649-PA 14..135 16..137 311 43.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19645-PA 151 GD19645-PA 15..151 16..152 736 99.3 Plus
Dsim\GD21999-PA 151 GD21999-PA 14..143 16..145 329 44.6 Plus
Dsim\GD20402-PA 147 GD20402-PA 4..139 7..143 328 43.1 Plus
Dsim\GD17149-PA 151 GD17149-PA 14..135 16..137 311 43.4 Plus
Dsim\GD11958-PA 168 GD11958-PA 11..163 11..149 297 37.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10109-PA 151 GJ10109-PA 15..151 16..152 736 99.3 Plus
Dvir\GJ22971-PA 147 GJ22971-PA 4..139 7..143 328 43.1 Plus
Dvir\GJ23435-PA 151 GJ23435-PA 14..135 16..137 313 44.3 Plus
Dvir\GJ19035-PA 151 GJ19035-PA 14..135 16..137 307 43.4 Plus
Dvir\GJ11187-PA 168 GJ11187-PA 11..163 11..149 297 37.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14053-PA 151 GK14053-PA 15..151 16..152 736 99.3 Plus
Dwil\GK11688-PA 147 GK11688-PA 4..139 7..143 328 43.1 Plus
Dwil\GK21643-PA 151 GK21643-PA 14..135 16..137 323 44.3 Plus
Dwil\GK25846-PA 151 GK25846-PA 14..135 16..137 311 43.4 Plus
Dwil\GK12909-PA 168 GK12909-PA 11..163 11..149 300 37.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25319-PA 151 GE25319-PA 15..151 16..152 736 99.3 Plus
Dyak\eff-PA 147 GE26430-PA 4..139 7..143 328 43.1 Plus
Dyak\GE24917-PA 151 GE24917-PA 14..132 16..134 318 47.1 Plus
Dyak\GE17114-PA 151 GE17114-PA 14..135 16..137 311 43.4 Plus
Dyak\GE24416-PA 168 GE24416-PA 11..163 11..149 305 38.6 Plus