Clone MIP21873 Report

Search the DGRC for MIP21873

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:218
Well:73
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptRab8-RB
Protein status:MIP21873.pep: gold
Sequenced Size:1085

Clone Sequence Records

MIP21873.complete Sequence

1085 bp assembled on 2010-04-20

GenBank Submission: BT124772.1

> MIP21873.complete
TTCTCTTCGTCTCTTATTTTAGCTGCGATGTCATGGGTTCCGACCAAACA
GGTATCGATTTTAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAA
GCTGCAGATATGGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCA
CGGCCTATTACAGAGGTGCCATGGGCATCATGCTGGTATATGACATAACC
CAAGAAAAGTCCTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGA
AAATGCGTCCGCCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAAT
TGACCGATAAGCGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATC
GAGTATGGCATCAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGT
GGAAGAAGCCTTCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAA
AGCGAATGGAGGCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCG
ATGGACAGTCGGACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTTG
ACGTGGCAACGTGCGCTCGGCACTGAAGCGGCATGGTGGCAACGACTACA
CGGTAGTGGTTTATGGTGGTAACTACGAGGTAGTAGTTTTCTTAACTCCT
GTTAGGTTCGAGTACAAGCGGGACCCCGACAAGCGGACATTAACTGACAT
CTAAATCAACCTTAAACATCAATCAGCAGCCGGCTCCCTTTAACCGAATA
AGCGCGATAATGGAATAGAACACAAATTGCATTATGAAACAGTTATTAAA
TAAAGTATATGACGACAGCGTGTACGAAATATACCTAGGCATGATAATAT
GTATACATATATACGTATATAACTCAAGTTTAAAGATAAAACGATCCAGC
GATAGCGAAAATCGAAGAGCAGCCAATCCAACCCGCCCGCGTCCTTCTCG
AAGAGGTTTTAGTATTTACGGAATTATGATTTTCTCTAGCAGCCATGGTT
GTCGATTTGTAAATTATTAATTGTAAAACAAATATATTGTATGTACTATG
TATGCATATGATTAGTTTAAAAAAAAAAAAAAAAA

MIP21873.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8.a 2180 Rab8.a 607..1626 50..1069 5100 100 Plus
Rab8-RA 2339 Rab8-RA 726..1745 50..1069 5100 100 Plus
Rab8.b 775 Rab8.b 19..775 1..757 3785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19857382..19857992 1068..458 3055 100 Minus
chr3L 24539361 chr3L 19858447..19858654 319..112 1040 100 Minus
chr3L 24539361 chr3L 19858069..19858212 459..316 720 100 Minus
chr3L 24539361 chr3L 19858713..19858777 113..49 325 100 Minus
chrX 22417052 chrX 20117848..20117982 89..223 315 82.2 Plus
chr3L 24539361 chr3L 19858852..19858904 53..1 265 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 20:24:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19868035..19868646 1069..458 3060 100 Minus
3L 28110227 3L 19869101..19869308 319..112 1040 100 Minus
3L 28110227 3L 19868723..19868866 459..316 720 100 Minus
3L 28110227 3L 19869367..19869431 113..49 325 100 Minus
X 23542271 X 20252275..20252409 89..223 315 82.2 Plus
3L 28110227 3L 19869506..19869558 53..1 265 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19861135..19861746 1069..458 3060 100 Minus
3L 28103327 3L 19862201..19862408 319..112 1040 100 Minus
3L 28103327 3L 19861823..19861966 459..316 720 100 Minus
3L 28103327 3L 19862467..19862531 113..49 325 100 Minus
X 23527363 X 20237414..20237548 89..223 315 82.2 Plus
3L 28103327 3L 19862606..19862658 53..1 265 100 Minus
Blast to na_te.dros performed 2019-03-15 19:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 5059..5114 1010..1064 124 71.4 Plus

MIP21873.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:59:41 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19857382..19857991 459..1068 100 <- Minus
chr3L 19858070..19858210 318..458 100 <- Minus
chr3L 19858449..19858653 113..317 100 <- Minus
chr3L 19858714..19858774 52..112 100 <- Minus
chr3L 19858854..19858904 1..51 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-20 09:32:01 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 115..624 39..551 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:14 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 115..624 39..551 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:17:16 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RB 1..519 33..551 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:11:38 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RB 1..519 33..551 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-20 09:32:01 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 668..1694 39..1068 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:14 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 668..1694 39..1068 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:17:16 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RB 1..1068 1..1068 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:11:38 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RB 1..1068 1..1068 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:41 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19868036..19868645 459..1068 100 <- Minus
3L 19868724..19868864 318..458 100 <- Minus
3L 19869103..19869307 113..317 100 <- Minus
3L 19869368..19869428 52..112 100 <- Minus
3L 19869508..19869558 1..51 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:41 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19868036..19868645 459..1068 100 <- Minus
3L 19868724..19868864 318..458 100 <- Minus
3L 19869103..19869307 113..317 100 <- Minus
3L 19869368..19869428 52..112 100 <- Minus
3L 19869508..19869558 1..51 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:59:41 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19868036..19868645 459..1068 100 <- Minus
3L 19868724..19868864 318..458 100 <- Minus
3L 19869103..19869307 113..317 100 <- Minus
3L 19869368..19869428 52..112 100 <- Minus
3L 19869508..19869558 1..51 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:17:16 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861824..19861964 318..458 100 <- Minus
arm_3L 19862203..19862407 113..317 100 <- Minus
arm_3L 19862468..19862528 52..112 100 <- Minus
arm_3L 19861136..19861745 459..1068 100 <- Minus
arm_3L 19862608..19862658 1..51 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:47:45 Download gff for MIP21873.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19861136..19861745 459..1068 100 <- Minus
3L 19861824..19861964 318..458 100 <- Minus
3L 19862203..19862407 113..317 100 <- Minus
3L 19862468..19862528 52..112 100 <- Minus
3L 19862608..19862658 1..51 100   Minus

MIP21873.pep Sequence

Translation from 2 to 550

> MIP21873.pep
LFVSYFSCDVMGSDQTGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITT
AYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCEL
TDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEK
RMEANNPPKGGHQLKPMDSRTKDSWLSRCSLL*

MIP21873.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10843-PA 207 GF10843-PA 42..207 17..182 880 100 Plus
Dana\GF20241-PA 204 GF20241-PA 43..185 17..159 533 70.6 Plus
Dana\GF18770-PA 213 GF18770-PA 42..177 17..151 434 59.6 Plus
Dana\GF17263-PA 205 GF17263-PA 45..175 17..147 424 58.8 Plus
Dana\GF11093-PA 220 GF11093-PA 54..201 16..163 397 48.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13365-PA 207 GG13365-PA 42..207 17..182 880 100 Plus
Dere\GG19277-PA 204 GG19277-PA 43..185 17..159 531 70.6 Plus
Dere\GG12316-PA 213 GG12316-PA 42..177 17..151 433 59.6 Plus
Dere\GG14761-PA 205 GG14761-PA 45..173 17..145 424 59.7 Plus
Dere\GG22724-PA 220 GG22724-PA 54..201 16..163 397 48.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16908-PA 207 GH16908-PA 42..207 17..182 842 95.8 Plus
Dgri\GH12621-PA 204 GH12621-PA 43..185 17..159 534 70.6 Plus
Dgri\GH20855-PA 213 GH20855-PA 42..177 17..151 432 59.6 Plus
Dgri\GH18937-PA 205 GH18937-PA 45..175 17..147 419 58.8 Plus
Dgri\GH24197-PA 220 GH24197-PA 55..201 17..163 397 49 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:46
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-PB 172 CG8287-PB 1..172 11..182 882 100 Plus
Rab8-PC 207 CG8287-PC 42..207 17..182 851 100 Plus
Rab8-PA 207 CG8287-PA 42..207 17..182 851 100 Plus
Rab10-PA 204 CG17060-PA 43..182 17..156 526 72.1 Plus
RabX4-PA 213 CG31118-PA 42..177 17..151 425 59.6 Plus
Rab1-PA 205 CG3320-PA 45..173 17..145 414 59.7 Plus
Rab3-PB 220 CG7576-PB 55..201 17..163 390 49 Plus
Rab3-PA 220 CG7576-PA 55..201 17..163 390 49 Plus
Rab2-PB 213 CG3269-PB 40..193 17..166 371 46.8 Plus
Rab2-PA 213 CG3269-PA 40..193 17..166 371 46.8 Plus
Rab19-PB 219 CG7062-PP3-RB 55..192 17..156 349 47.9 Plus
Rab19-PA 219 CG7062-PA 55..192 17..156 349 47.9 Plus
Rab35-PC 190 CG9575-PC 31..184 17..172 344 43.6 Plus
Rab35-PB 201 CG9575-PB 42..195 17..172 344 43.6 Plus
Rab35-PD 201 CG9575-PD 42..195 17..172 344 43.6 Plus
Rab35-PA 201 CG9575-PA 42..195 17..172 344 43.6 Plus
Rab26-PE 410 CG34410-PE 247..378 17..147 338 47 Plus
Rab26-PD 410 CG34410-PD 247..378 17..147 338 47 Plus
Rab26-PC 410 CG34410-PC 247..378 17..147 338 47 Plus
Rab11-PA 214 CG5771-PA 45..187 17..160 337 44.4 Plus
Rab11-PB 214 CG5771-PB 45..187 17..160 337 44.4 Plus
Rab14-PD 215 CG4212-PD 45..200 17..171 328 42.9 Plus
Rab14-PA 215 CG4212-PA 45..200 17..171 328 42.9 Plus
Rab30-PD 223 CG9100-PD 41..167 17..144 328 47.7 Plus
Rab30-PC 223 CG9100-PC 41..167 17..144 328 47.7 Plus
Rab30-PB 223 CG9100-PB 41..167 17..144 328 47.7 Plus
Rab30-PA 223 CG9100-PA 41..167 17..144 328 47.7 Plus
Rab14-PB 239 CG4212-PB 69..224 17..171 328 42.9 Plus
Rab9Fb-PA 214 CG32670-PA 41..168 17..144 324 48.4 Plus
Rab26-PF 373 CG34410-PF 207..341 14..147 322 45.2 Plus
Rab26-PG 388 CG34410-PG 221..356 13..147 322 44.9 Plus
Rab26-PB 388 CG34410-PB 221..356 13..147 322 44.9 Plus
Rab6-PB 208 CG6601-PB 34..201 5..173 311 40.7 Plus
Rab6-PA 208 CG6601-PA 34..201 5..173 311 40.7 Plus
Rab4-PA 213 CG4921-PA 38..174 13..149 309 46 Plus
Rab4-PB 213 CG4921-PB 38..174 13..149 309 46 Plus
Rab5-PI 219 CG3664-PI 63..210 17..171 286 38.7 Plus
Rab5-PH 219 CG3664-PH 63..210 17..171 286 38.7 Plus
Rab5-PG 219 CG3664-PG 63..210 17..171 286 38.7 Plus
Rab5-PE 219 CG3664-PE 63..210 17..171 286 38.7 Plus
Rab5-PC 219 CG3664-PC 63..210 17..171 286 38.7 Plus
Rab5-PD 219 CG3664-PD 63..210 17..171 286 38.7 Plus
Rab5-PF 219 CG3664-PF 63..210 17..171 286 38.7 Plus
Rab5-PB 219 CG3664-PB 63..210 17..171 286 38.7 Plus
Rab5-PA 219 CG3664-PA 63..210 17..171 286 38.7 Plus
Rab27-PC 230 CG14791-PC 45..182 17..149 283 42.8 Plus
Rab27-PB 236 CG14791-PB 51..188 17..149 283 42.8 Plus
RabX2-PA 195 CG2885-PA 41..168 17..144 281 44.5 Plus
Rab39-PB 218 CG12156-PB 38..178 13..147 280 44.4 Plus
Rab39-PA 218 CG12156-PA 38..178 13..147 280 44.4 Plus
Rab40-PC 255 CG1900-PC 42..166 16..141 268 42.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13664-PA 207 GI13664-PA 42..207 17..182 844 96.4 Plus
Dmoj\GI11034-PA 204 GI11034-PA 43..185 17..159 537 70.6 Plus
Dmoj\GI10714-PA 213 GI10714-PA 42..177 17..151 433 59.6 Plus
Dmoj\GI10837-PA 205 GI10837-PA 45..175 17..147 423 58.8 Plus
Dmoj\GI20173-PA 220 GI20173-PA 54..201 16..163 399 48.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15675-PA 207 GL15675-PA 42..207 17..182 862 98.2 Plus
Dper\GL13857-PA 213 GL13857-PA 42..177 17..151 432 59.6 Plus
Dper\GL27164-PA 205 GL27164-PA 45..173 17..145 424 59.7 Plus
Dper\GL17187-PA 220 GL17187-PA 54..201 16..163 397 48.6 Plus
Dper\GL11116-PA 213 GL11116-PA 40..195 17..168 376 46.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23499-PA 207 GA23499-PA 42..207 17..182 862 98.2 Plus
Dpse\GA26078-PA 204 GA26078-PA 43..185 17..159 531 69.9 Plus
Dpse\GA16022-PA 213 GA16022-PA 42..177 17..151 432 59.6 Plus
Dpse\GA17362-PA 205 GA17362-PA 45..173 17..145 424 59.7 Plus
Dpse\GA20450-PA 220 GA20450-PA 54..201 16..163 397 48.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15893-PA 207 GM15893-PA 42..207 17..182 880 100 Plus
Dsec\GM23016-PA 204 GM23016-PA 43..185 17..159 531 70.6 Plus
Dsec\GM17780-PA 213 GM17780-PA 42..177 17..151 433 59.6 Plus
Dsec\GM15089-PA 205 GM15089-PA 45..173 17..145 424 59.7 Plus
Dsec\GM20500-PA 220 GM20500-PA 54..201 16..163 397 48.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12244-PA 207 GD12244-PA 42..207 17..182 880 100 Plus
Dsim\GD18265-PA 213 GD18265-PA 42..177 17..151 433 59.6 Plus
Dsim\GD17482-PA 117 GD17482-PA 4..106 16..118 426 75.7 Plus
Dsim\GD19996-PA 205 GD19996-PA 45..173 17..145 424 59.7 Plus
Dsim\GD10420-PA 213 GD10420-PA 40..195 17..168 376 46.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13999-PA 207 GJ13999-PA 42..207 17..182 844 96.4 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 43..185 17..159 539 71.3 Plus
Dvir\GJ23131-PA 213 GJ23131-PA 42..177 17..151 436 60.3 Plus
Dvir\GJ14443-PA 205 GJ14443-PA 45..175 17..147 423 58.8 Plus
Dvir\GJ20130-PA 220 GJ20130-PA 55..201 17..163 397 49 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17214-PA 207 GK17214-PA 42..207 17..182 847 97 Plus
Dwil\GK25049-PA 204 GK25049-PA 43..185 17..159 545 72 Plus
Dwil\GK13164-PA 213 GK13164-PA 42..177 17..151 431 59.6 Plus
Dwil\GK12772-PA 205 GK12772-PA 45..173 17..145 424 59.7 Plus
Dwil\GK19661-PA 220 GK19661-PA 54..201 16..163 397 48.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22459-PA 207 GE22459-PA 42..207 17..182 880 100 Plus
Dyak\GE17866-PA 204 GE17866-PA 43..185 17..159 531 70.6 Plus
Dyak\GE10770-PA 213 GE10770-PA 42..177 17..151 433 59.6 Plus
Dyak\Rab1-PA 205 GE25003-PA 45..173 17..145 424 59.7 Plus
Dyak\GE13081-PA 220 GE13081-PA 54..201 16..163 397 48.6 Plus

MIP21873.hyp Sequence

Translation from 2 to 550

> MIP21873.hyp
LFVSYFSCDVMGSDQTGIDFKIRTIELDNKKIKLQIWDTAGQERFRTITT
AYYRGAMGIMLVYDITQEKSFENIKNWIRNIEENASADVEKMLLGNKCEL
TDKRQVSKERGEQLAIEYGIKFMETSAKASINVEEAFLTLASDIKAKTEK
RMEANNPPKGGHQLKPMDSRTKDSWLSRCSLL*

MIP21873.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-PB 172 CG8287-PB 1..172 11..182 882 100 Plus
Rab8-PC 207 CG8287-PC 42..207 17..182 851 100 Plus
Rab8-PA 207 CG8287-PA 42..207 17..182 851 100 Plus
Rab10-PA 204 CG17060-PA 43..182 17..156 526 72.1 Plus
RabX4-PA 213 CG31118-PA 42..177 17..151 425 59.6 Plus