Clone MIP22234 Report

Search the DGRC for MIP22234

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:222
Well:34
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG13004-RD
Protein status:MIP22234.pep: gold
Sequenced Size:1471

Clone Sequence Records

MIP22234.complete Sequence

1471 bp assembled on 2010-04-26

GenBank Submission: BT124834.1

> MIP22234.complete
AAAGAGAGAGGAAGATCCACGGCGGCCAAAAAGCATTTTCGAAAAAACAA
AATCGAGAGGAGTGAATAGAACGAATATCGAAATGCGCGCCGTTTACGAC
TTGTTGCTGAGCAACGCCTTTGATCCCAGAATGGTACTACAAAACCACAA
CACTGTGGTGGCCCGTTCCACCTTGACGCCGAACAGCAGCAGCCAGAACT
TTGGCTCCCAACATCCAGCTGGAACGCCCAATGGATCCGGAACCGGACGT
AGTCCCCTGAACGCCGGACCCAGCACCCAACGTCCCATTATCGACCTGTT
GGTGGCCATGGTGGCCGTGCCGGTGCTTATCCTCTGCGCCCTGCAGTTGG
AGAAGAATCTGCGGGACAATAGCGTGGAGTCTCGCTGGTTGGTTTTCGCC
CTGGGCATCGGGATGCTGGTGATCAGCGTGATCATCTGCGGTTATGTCAC
GCACCGCATGGGCGTCTGCATTTGGGCGGGACCCATCGACGAGGCGGGAA
ACAGGGCCACCAATGGAGCCATGCCACATATCAACTCCCAGAACGATGTG
CTGCGCATTGTCGACTCACTGCCGCCAAGTTACGAAAGCGTGGTCAAGTT
CGAGCTACCGCCGCCGACCTACGAATGCCTGGTCATCAGCTGGGGTCGGT
CGAAGGATCTGGAGCCGGCACAGACCTCAGCCAAGCGAGGAGCTGGTGGA
TCCAACTCCCCGCCCGGGTCCACCCTGCACATCTAGGGTGGAAGTGGTGG
CGAGGGAGGGAGTTGAATGGAACTAATGGAGCAGTAGATGGAGGAGAGAG
AATTAAGAGATTTTTTCCCAACTGGCAGCGCAACGGATTTCTGTACTTGA
CCCACTTAAAATAACCATATGCAAAAAAAACTGTAACAACGACATCGATA
AGTGGTGTTCTGGAAACTCTGGTGTTTTCGAAAGTTCCCAGAGCATTTAG
CTGAATACCGCCATATATCCGTATGTCTTATTATAAATTGTAAGCTAACT
ATTAGCTTGTCATAGCATAATGGCATTGTATTTACTTTGATTTTAAGCAG
ATAGTATTTTAACTCGCAGAGCCTATCAAAAACGATATCGATTCTCTCGC
AGTGTACATAGAGTTTTTTTTTTTTGAAACGCACAGCATCTAGTCCAAAG
TTGTATATAGCCGAAAAAGAAATAACGGAACCACACATGATGCGCTCATA
TCAGTTTTAAACACATATATTGTATATTATTGAATTAATGCCAGGGCAGG
GCGGCAATCAAGCAACAAAACTACAGGGTAGTAATTAGTCTTAGTCTTAG
CGTAACGCCTGTATATAACTATGTATGTATATTTCGATTACAACTACTTT
TATTATAGCCACATCGATAGCGATGTCGATTGCCAACAAATGTCGGAAAA
CGTTCAGAGTTGCTTTCCAGAAATAAAGAATTCCTATTAAGTTTATTGAA
ATCCAAAAAAAAAAAAAAAAA

MIP22234.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:03:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004.a 2341 CG13004.a 925..2251 130..1456 6635 100 Plus
CG13004-RA 1134 CG13004-RA 62..1134 124..1196 5365 100 Plus
CG13004-RB 1991 CG13004-RB 925..1991 130..1196 5335 100 Plus
CG13004.a 2341 CG13004.a 883..926 1..44 220 100 Plus
CG13004-RB 1991 CG13004-RB 883..926 1..44 220 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16716339..16717263 1454..530 4625 100 Minus
chrX 22417052 chrX 16717334..16717739 529..124 2015 99.8 Minus
chrX 22417052 chrX 16718691..16718777 129..43 420 98.9 Minus
chrX 22417052 chrX 16724252..16724293 42..1 195 97.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16826679..16827605 1456..530 4635 100 Minus
X 23542271 X 16827676..16828081 529..124 2030 100 Minus
X 23542271 X 16829040..16829126 129..43 435 100 Minus
X 23542271 X 16834612..16834653 42..1 210 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:58:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16834777..16835703 1456..530 4635 100 Minus
X 23527363 X 16835774..16836179 529..124 2030 100 Minus
X 23527363 X 16837138..16837224 129..43 435 100 Minus
X 23527363 X 16842710..16842751 42..1 210 100 Minus
Blast to na_te.dros performed on 2019-03-16 11:38:33 has no hits.

MIP22234.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:39:20 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16716339..16717263 530..1454 100 <- Minus
chrX 16717334..16717733 130..529 99 <- Minus
chrX 16718691..16718777 43..129 98 <- Minus
chrX 16724252..16724293 1..42 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-04-26 18:45:32 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 1..606 131..736 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:01:19 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RB 1..606 131..736 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 13:53:45 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RD 1..654 83..736 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:22:58 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RD 1..654 83..736 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-26 18:45:32 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RA 60..960 120..1022 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:01:19 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RA 60..1295 120..1357 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:53:45 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RD 422..1875 1..1454 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:22:58 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
CG13004-RD 868..2321 1..1454 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:20 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
X 16826681..16827605 530..1454 100 <- Minus
X 16827676..16828075 130..529 100 <- Minus
X 16829040..16829126 43..129 100 <- Minus
X 16834612..16834653 1..42 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:20 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
X 16826681..16827605 530..1454 100 <- Minus
X 16827676..16828075 130..529 100 <- Minus
X 16829040..16829126 43..129 100 <- Minus
X 16834612..16834653 1..42 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:39:20 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
X 16826681..16827605 530..1454 100 <- Minus
X 16827676..16828075 130..529 100 <- Minus
X 16829040..16829126 43..129 100 <- Minus
X 16834612..16834653 1..42 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:53:45 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16720714..16721638 530..1454 100 <- Minus
arm_X 16721709..16722108 130..529 100 <- Minus
arm_X 16723073..16723159 43..129 100 <- Minus
arm_X 16728645..16728686 1..42 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:36:19 Download gff for MIP22234.complete
Subject Subject Range Query Range Percent Splice Strand
X 16835774..16836173 130..529 100 <- Minus
X 16837138..16837224 43..129 100 <- Minus
X 16842710..16842751 1..42 100   Minus
X 16834779..16835703 530..1454 100 <- Minus

MIP22234.hyp Sequence

Translation from 0 to 735

> MIP22234.hyp
KREEDPRRPKSIFEKTKSRGVNRTNIEMRAVYDLLLSNAFDPRMVLQNHN
TVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQRPIIDLL
VAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISVIICGYVT
HRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPSYESVVKF
ELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLHI*

MIP22234.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:35:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PD 217 CG13004-PD 1..217 28..244 1130 100 Plus
CG13004-PB 201 CG13004-PB 1..201 44..244 1049 100 Plus
CG13004-PC 201 CG13004-PC 1..201 44..244 1049 100 Plus
CG13004-PA 201 CG13004-PA 1..201 44..244 1049 100 Plus

MIP22234.pep Sequence

Translation from 1 to 735

> MIP22234.pep
KREEDPRRPKSIFEKTKSRGVNRTNIEMRAVYDLLLSNAFDPRMVLQNHN
TVVARSTLTPNSSSQNFGSQHPAGTPNGSGTGRSPLNAGPSTQRPIIDLL
VAMVAVPVLILCALQLEKNLRDNSVESRWLVFALGIGMLVISVIICGYVT
HRMGVCIWAGPIDEAGNRATNGAMPHINSQNDVLRIVDSLPPSYESVVKF
ELPPPTYECLVISWGRSKDLEPAQTSAKRGAGGSNSPPGSTLHI*

MIP22234.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21825-PA 213 GF21825-PA 1..213 28..244 912 83.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:40:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18220-PA 220 GG18220-PA 1..220 28..244 964 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24220-PA 208 GH24220-PA 1..208 44..244 715 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13004-PD 217 CG13004-PD 1..217 28..244 1130 100 Plus
CG13004-PB 201 CG13004-PB 1..201 44..244 1049 100 Plus
CG13004-PC 201 CG13004-PC 1..201 44..244 1049 100 Plus
CG13004-PA 201 CG13004-PA 1..201 44..244 1049 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15847-PA 231 GI15847-PA 1..193 44..228 699 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:40:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22822-PA 211 GL22822-PA 1..211 28..244 865 80.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11970-PA 211 GA11970-PA 1..211 28..244 870 81.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13362-PA 204 GM13362-PA 1..204 44..244 848 89.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:40:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15719-PA 204 GD15719-PA 1..204 44..244 831 89.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19337-PA 224 GJ19337-PA 1..224 28..244 848 77.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:40:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25824-PA 226 GK25824-PA 1..226 28..244 800 73.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15639-PA 217 GE15639-PA 1..217 28..244 975 88.5 Plus