Clone MIP22722 Report

Search the DGRC for MIP22722

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:227
Well:22
Vector:pOT2
Associated Gene/TranscriptCG42851-RB
Protein status:MIP22722.pep: gold
Sequenced Size:768

Clone Sequence Records

MIP22722.complete Sequence

768 bp assembled on 2011-03-15

GenBank Submission: BT126223.1

> MIP22722.complete
CAAATTCAACAACATATTTGATAGATTTCAGAAAACCTACGATTCATAGG
TTTCAAGGGGCCTTGCAGATCCATGTGGCTTCTCTTGCTCCTGCTGGGTC
TGCCGATGGAAACAAACGAAGGAGAGGAGTGCAGAAATGGACTAACTCTC
GGACGCCAGCAGTGCTACCTCCACGAGGAGATCTTTCTAGCCCACCACCC
TTTGCAAAGTGTCACAGCCAAGAGGCTCAAGCTTCCCTGGTGGTGCGCCC
TCCTAGAAAGCCTCTTCCTGCTCCTGCTGGTGAAGCTGCTCCAGTTGTAG
ATGAGCCAACATCTCTCTCTCTTTCTCTCTCTCTCCGTAATTGCCGCTGA
TGTAAGCGGACAGGTGGAGGCGACAAATGTCACACATGCTGCTCGTAAAT
CACATCGGAAACGGTTTTGCTCTTGCTGCACATGATAATTTGGCCAGGGT
GGCTTGCTGGAGGTCTGGCCTATGTGCTTCTAATTAAATTGTTCAAAATG
TTTTAAAGCGCGCTTTTGGGTCTGGCGCTGGAAAATCGCTGACAAATGCT
TCCATCAAAACACAGAAAAAGTTTTCATTTTGTTTTGTCAATGTCCAGGC
CACATAGCACTCAACGGTGGACGGGCACAGTGGGCTGCGATCTATGGAAA
TGGGAGCATATGGAAATATGGCATCACATGGTTTTGTGACAAATTATAAA
TATATATTTTACAAGAGGTGACTGTAGAGTAAATAAATACTAAATCAAAT
GAAAAAAAAAAAAAAAAA

MIP22722.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20695296..20696046 1..751 3740 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24809357..24810108 1..752 3760 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24810556..24811307 1..752 3760 100 Plus
Blast to na_te.dros performed 2019-03-16 22:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2772..2800 303..275 109 86.2 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 6398..6449 297..250 107 71.2 Minus
TART-C 11124 TART-C TARTC 11124bp 7854..7905 297..250 107 71.2 Minus

MIP22722.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:30:28 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20695296..20696046 1..751 94   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-15 14:35:42 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
CG42851-RA 1..228 73..300 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:11 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
CG42851-RA 1..228 73..300 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:28:29 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
CG42851-RB 1..195 106..300 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-15 14:35:41 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
CG42851-RA 10..342 1..333 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:11 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
CG42851-RA 33..783 1..751 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:29 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
CG42851-RB 33..783 1..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:28 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24809357..24810107 1..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:28 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24809357..24810107 1..751 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:30:28 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24809357..24810107 1..751 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:11 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20696880..20697630 1..751 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:55 Download gff for MIP22722.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24810574..24811324 1..751 100   Plus

MIP22722.hyp Sequence

Translation from 2 to 349

> MIP22722.hyp
NSTTYLIDFRKPTIHRFQGALQIHVASLAPAGSADGNKRRRGVQKWTNSR
TPAVLPPRGDLSSPPPFAKCHSQEAQASLVVRPPRKPLPAPAGEAAPVVD
EPTSLSLSLSLRNCR*
Sequence MIP22722.hyp has no blast hits.

MIP22722.pep Sequence

Translation from 72 to 299

> MIP22722.pep
MWLLLLLLGLPMETNEGEECRNGLTLGRQQCYLHEEIFLAHHPLQSVTAK
RLKLPWWCALLESLFLLLLVKLLQL*

MIP22722.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23009-PA 75 GG23009-PA 1..59 1..59 234 86.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:53:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42851-PB 64 CG42851-PB 1..64 12..75 341 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11903-PA 75 GM11903-PA 1..59 1..59 286 89.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11900-PA 75 GD11900-PA 1..59 1..59 288 91.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14446-PA 64 GE14446-PA 1..49 12..60 229 85.7 Plus