MIP22907.complete Sequence
940 bp assembled on 2010-06-01
GenBank Submission: BT124953.1
> MIP22907.complete
ATAATTAACGGCTGCGCGTGTAGAGAGAGTTCAAGTTACTTTATCAATTC
TTTCTTTTTCGGGACCTAACAATACTCATACTTGCACTTAAGTAGGCGGA
GTGAAAGCCAAGTCATAATTTCGACGATGCGTATACATATATAGAATCAA
TCAACTGATTAATTGCAGCTGTGCAACGCTTGAGTTTTTGCCTCAGCCTT
TCGTCTGGTGACATAGTTTACTCGATTAATTATGTGCGAACAGCTATGTT
TTCCGCTCATCTGGCGCATTTATCAGATGGTGCCATATTTCCTCGGAGAA
GAAGGCATTGAATGTCAGTGGTGTTCGGATTACACTAAAGTCGGTCAATA
ACTTCGGACCCCTGCACAAAGCGTTTAAGTGACCACAAGTGATCGAGATG
TTCCTCTTGTTGTTTACCCCCTTGCCAACTGATCTTAAGTTTGGGATGCC
ACGCTAGTTTAGTTGACCGGTTTAATGACTCGAACTTAATTTGCGCCCTC
GGAGAGAGGAAAGTAGCCAGCAAAAAATGCAAGCCGAAAAATATGCGAAA
CAACCAGGCAGACAACACCCAACGGCAAAAACTCGGCCTGGAGAGAAAGA
GGCAGTGGCAGCGACGCGTCTGGGGGCTTACAATGGCGGTCGCAACACTA
GTGGCGCTTGTAAATAGAGACATAACGAAAAGGTATTAAAAATGATGCGG
CAAAAGAAATAACTGCACTATTTTCCATAAAAATATTTTGAAAAATAAAC
TGTTGCGCCGTTTTTAGAGATCTTAAAAACCTCTTTACGTCAACTTTGAT
AACTAATTGAGTTCCTTTGCATAGTTATGATTTTTAAAAATAACAATTTA
AGATACATGATATTCCCTACATGAACAATTAGTGGTTTATAATAAATAAG
CAACCTAATGCGTAAGATCCCACAAAAAAAAAAAAAAAAA
MIP22907.complete Blast Records
Blast to MB8.fasta performed on 2010-07-15 21:39:02 has no hits.
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 3247764..3248453 | 234..923 | 3435 | 99.9 | Plus |
chr3L | 24539361 | chr3L | 3247424..3247657 | 1..234 | 1170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3248355..3249046 | 234..925 | 3460 | 100 | Plus |
3L | 28110227 | 3L | 3248015..3248248 | 1..234 | 1170 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:55:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 3248355..3249046 | 234..925 | 3460 | 100 | Plus |
3L | 28103327 | 3L | 3248015..3248248 | 1..234 | 1170 | 100 | Plus |
Blast to na_te.dros performed 2019-03-15 23:09:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 2703..2760 | 673..731 | 112 | 67.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1250..1364 | 662..781 | 109 | 61.5 | Plus |
MIP22907.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:10:06 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 3247424..3247657 | 1..234 | 100 | -> | Plus |
chr3L | 3247765..3248453 | 235..923 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:29:44 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43389-RA | 1..147 | 543..689 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:21:20 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43389-RA | 1..147 | 543..689 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:29:44 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43389-RA | 1..923 | 1..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:21:20 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43389-RA | 1..923 | 1..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:06 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3248015..3248248 | 1..234 | 100 | -> | Plus |
3L | 3248356..3249044 | 235..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:06 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3248015..3248248 | 1..234 | 100 | -> | Plus |
3L | 3248356..3249044 | 235..923 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:10:06 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3248015..3248248 | 1..234 | 100 | -> | Plus |
3L | 3248356..3249044 | 235..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:29:44 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3248015..3248248 | 1..234 | 100 | -> | Plus |
arm_3L | 3248356..3249044 | 235..923 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:36:56 Download gff for
MIP22907.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3248015..3248248 | 1..234 | 100 | -> | Plus |
3L | 3248356..3249044 | 235..923 | 100 | | Plus |
MIP22907.pep Sequence
Translation from 542 to 688
> MIP22907.pep
MRNNQADNTQRQKLGLERKRQWQRRVWGLTMAVATLVALVNRDITKRY*
MIP22907.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43389-PA | 48 | CG43389-PA | 1..48 | 1..48 | 248 | 100 | Plus |
MIP22907.hyp Sequence
Translation from 542 to 688
> MIP22907.hyp
MRNNQADNTQRQKLGLERKRQWQRRVWGLTMAVATLVALVNRDITKRY*
MIP22907.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43389-PA | 48 | CG43389-PA | 1..48 | 1..48 | 248 | 100 | Plus |