Clone MIP23840 Report

Search the DGRC for MIP23840

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:238
Well:40
Vector:pOT2
Associated Gene/TranscriptCG34216-RB
Protein status:MIP23840.pep: gold
Sequenced Size:1976

Clone Sequence Records

MIP23840.complete Sequence

1976 bp assembled on 2010-09-13

GenBank Submission: BT125648.1

> MIP23840.complete
CACAGACTTGGTGGCATGATTTTGGCCACTAACGATGTTCCAGAAAGGCT
GAAACAACTGCAAGCTGCAACCGAGTCAAAATTAAAGTCATGTGACGGTC
TAAACAGTAAAGTGGAGCAAGTGCCATGCGAGGAAGAGCTATACCTAGAA
CCTTTGAATTAATAGTCATTGCTTCAAGATTATAATGAACGAGTGCAATA
CATTCTAAATTCGAGTTCCAATTCAGACAATGCTATGCGCCAGATAACCT
TGCATAGCAATAAACATTAAAGCTAGCCTAAGAAAAATTTAATTTCTTTT
TTATAAGAAAAACCAAGATATTTATAGAGTAAACTTCTAGCAGTGCCCTT
TATGTCTCATAGAAACCGACCATTTCAAAATGTTTGTGCCTCCTTGCGGC
TTAGGTTTCGAAAGAAGGTCGTTTATTTGGACCCCAATCAGCATCATTTT
TGAAAATTCCAAATTGAAAGTCGGTCCAAGCTGGCTTGTTTACAGTGTTT
CAATTCTACTTCTGGCCACCTCGATCGATGTGCATCCACTGCTGTCGCCT
CCGCCGGACACCATGTCCACCGATTCCCTACAGCTGTCCACACTGCCCGG
TGCGCACCATCTCCAGCTGCTGTCCACTGGGCAGTCGGCCCCTCGCCGAG
AATCCTTTCATAAGAGGTCCGGATCGGGAGCCAACCCCCGATCCCTGCGA
CACCTTGCCACCGCGCTGGCTGGACCTCAATCGACGGGTCATATTTGCCT
TGGCAAAAAGATTATGTCGATCTCCAGAGGCAGCTCATTATATTTTGCTT
CGCCTGTTGTATGCCAACTATAGAAAAGTGATGATGATATCCAGAAAACG
AAGGAGATACAAGGTGCCACTAAGTGGGTTTCCCGATCAGGATTTGTTCT
CCGCCAGCGCACATTTCGATAGCAATGGTTACCTCTCCGATCCCATGGCT
CCCGAAACTCTGGGAAAGCTACTCCACATGATGCAGGACTACATCCTTCG
GCTGAGAGCGCTGAATCGCAAGTACAAGTGGTGTGGCAACGGCGAGGACT
TTGGAGATGTATTGCTCCTATTGGGAGAGCAAGACGAACTGGTACGATTG
TTAAGAGATCTCTTTGGAGACAGCGATGTTGTGTCCATTCCAAAGCTCCT
GAGCGCCCTTAGCGAGCTGGAAATCAATAATTTATACGGAAAGTACAAGA
AGAAAACAGTTCCCTTTATGGTGAGAAGTATATCTGATCTCTACTCCGAA
GTGACGGAACCAAAGAGTCCAGTTTTGATATCATTAGCGCACATAGCCAA
CAAAGGAGTTTCCCCTTATGGACCGAGCCACTTGAAAAACATCTTGAATT
TCAGTCCAAAGTCCTTGCCTATGATGGGTAAACACCCACCGCCTAAAAGA
AGTAAAAGTGAAAAATGCATTCCAACATCAAAAACGAATTTAACCCAAGC
AGTACAAAATACCCAAAAAAAATCGAATTTCAAGGAACCAGCAGACAGTA
CTGGGATTTTAAGTCCAACTTCCAAGAACTTACAATAAGATATCACAGCA
AAGCCACTTCAACCAAACCAAAGGAACCTTCTATGAACCCTTTGACGCCC
AGAAGAACTCCATCTGGAGTTCCTCCACCACGCAGACTCACATCGATTAA
TGACGAATGGTCGGATTGCGGGTCTATTACTATAAAAATCTGGATGACCA
ACTGAGGTGATCTACGCAATCCTATCATGGCAGTACCCAGCATTATGATC
TTAACAGCAGTACACAGGAAATCTTTAGGCAACTCAACGCAGTCAAGCAA
TGAATATGGCAGCTTAACCAAGATGTTTTTATTGGAGCAGTTGTCCGATC
CGTTGGTTGAGCTGGAAAAACGGGTGGACTTATTCCTATCGTATCTTCTA
TGAATGACGAAACAAACCTATGATTCAACTTAAACGAAATAAAGAAACGA
AAAAAAAGCAAAAAAAAAAAAAAAAA

MIP23840.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3590827..3592677 1956..106 9075 99.4 Minus
chr2R 21145070 chr2R 3592734..3592840 107..1 535 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7703505..7705359 1960..106 9275 100 Minus
2R 25286936 2R 7705416..7705522 107..1 535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7704704..7706558 1960..106 9275 100 Minus
2R 25260384 2R 7706615..7706721 107..1 535 100 Minus
Blast to na_te.dros performed 2019-03-17 00:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 6618..6739 176..302 117 62.3 Plus

MIP23840.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:48:10 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3590825..3592675 108..1959 99 <- Minus
chr2R 3592734..3592840 1..107 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-09-13 16:15:38 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RA 1..698 528..1228 99 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:41:08 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RA 1..698 528..1228 99 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:15:42 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RB 1..1011 528..1538 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:37:24 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RB 1..1011 528..1538 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-13 16:15:38 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RA 1..698 528..1228 99 == Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:41:08 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RA 1..698 528..1228 99 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:15:42 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RB 1..1590 370..1959 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:37:24 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
CG34216-RB 1..1590 370..1959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:48:10 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7705416..7705522 1..107 100   Minus
2R 7703506..7705357 108..1959 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:48:10 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7705416..7705522 1..107 100   Minus
2R 7703506..7705357 108..1959 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:48:10 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7705416..7705522 1..107 100   Minus
2R 7703506..7705357 108..1959 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:15:42 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3591011..3592862 108..1959 100 <- Minus
arm_2R 3592921..3593027 1..107 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:44:31 Download gff for MIP23840.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7706615..7706721 1..107 100   Minus
2R 7704705..7706556 108..1959 100 <- Minus

MIP23840.pep Sequence

Translation from 527 to 1537

> MIP23840.pep
MCIHCCRLRRTPCPPIPYSCPHCPVRTISSCCPLGSRPLAENPFIRGPDR
EPTPDPCDTLPPRWLDLNRRVIFALAKRLCRSPEAAHYILLRLLYANYRK
VMMISRKRRRYKVPLSGFPDQDLFSASAHFDSNGYLSDPMAPETLGKLLH
MMQDYILRLRALNRKYKWCGNGEDFGDVLLLLGEQDELVRLLRDLFGDSD
VVSIPKLLSALSELEINNLYGKYKKKTVPFMVRSISDLYSEVTEPKSPVL
ISLAHIANKGVSPYGPSHLKNILNFSPKSLPMMGKHPPPKRSKSEKCIPT
SKTNLTQAVQNTQKKSNFKEPADSTGILSPTSKNLQ*

MIP23840.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11697-PA 433 GF11697-PA 1..253 1..245 856 63.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:35:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10717-PA 126 GG10717-PA 1..92 140..231 356 90.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG34216-PB 336 CG34216-PB 1..336 1..336 1794 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11535-PA 279 GL11535-PA 1..205 60..258 493 47.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24763-PA 336 GA24763-PA 1..336 1..323 626 41.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20763-PA 232 GM20763-PA 1..231 1..231 1198 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10227-PA 239 GD10227-PA 1..236 1..236 1209 95.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18002-PA 310 GK18002-PA 1..271 1..263 618 49.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:35:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23695-PA 239 GE23695-PA 1..236 1..236 1128 89.8 Plus

MIP23840.hyp Sequence

Translation from 527 to 1537

> MIP23840.hyp
MCIHCCRLRRTPCPPIPYSCPHCPVRTISSCCPLGSRPLAENPFIRGPDR
EPTPDPCDTLPPRWLDLNRRVIFALAKRLCRSPEAAHYILLRLLYANYRK
VMMISRKRRRYKVPLSGFPDQDLFSASAHFDSNGYLSDPMAPETLGKLLH
MMQDYILRLRALNRKYKWCGNGEDFGDVLLLLGEQDELVRLLRDLFGDSD
VVSIPKLLSALSELEINNLYGKYKKKTVPFMVRSISDLYSEVTEPKSPVL
ISLAHIANKGVSPYGPSHLKNILNFSPKSLPMMGKHPPPKRSKSEKCIPT
SKTNLTQAVQNTQKKSNFKEPADSTGILSPTSKNLQ*

MIP23840.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:26:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG34216-PB 336 CG34216-PB 1..336 1..336 1794 100 Plus