Clone MIP23949 Report

Search the DGRC for MIP23949

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:239
Well:49
Vector:pOT2
Associated Gene/TranscriptCG31687-RB
Protein status:MIP23949.pep: gold
Sequenced Size:3676

Clone Sequence Records

MIP23949.complete Sequence

3676 bp assembled on 2010-08-24

GenBank Submission: BT125616.1

> MIP23949.complete
CCGGCAAATAAAATTGTTTTCATAGCCTTTCCAAGCAAATCCGGAACAAT
GGCGATGCAGAAGTTCTTCAGCGTGCTGCTGCCGGATGTGAAGCGGGAGC
TGCGCCGCGGGATCATCGAGTGCTCCAAGCGGGGCCTCCTGCACAGCACC
AAGTGGCTGGCGGAAATGCATCACGGACTGGCCGATGTGCACATAGACAA
TGAGGCGCCTGATGAGGATCGCACATTCAGCGAGTGTCAGCTGGAGGGGA
TTGCGCCGGAGGAGTACAGCGACTACTTCCTGGCCAAGAGCTACTACGAC
GTGAGGGAGTACGACAGGGCGGCGCATGCGGTCAGGAACTGCGAGTCCAG
TGTTCCGCGCTTCCTGCACTTCTATTCCAGCTACATGGCCAGGGAAAAGC
GGCGACTGGACTCGACCACGGACCAGGCGAATCTGCACGAACCGAATCAG
ATGCGCGATCTCGCCGACCTGCTGGCTACGTTGCGCATGGAATACGGCAA
AAGTCGGCTCGATGGCTACGGAATATACTTATACGGAGTAGTCCTGAAAG
CACTGAATCTCAACCAGGCCGCCGAGCAAATGCTGGTCCAGGCCATCAGA
CTGGTACCCATGCTGTGGAGCGCCTATCTGGAGCTCTCGCCCCTCATCAT
GGAGAAGAAGAAACTGCTGAGCCTGCAGCTGGGTGGTCACTGGATGCGGC
ACTTCTTCATGGCGCACACTTACCTGGAGCTGTACCTCAACGACGACGGC
CTGAAGATCTACGAGGACCTGCAGGCATCGGGTTTCAGCAAGAGCATCTA
CTTGATTGCCCAGATGGCTCTGGTCTATCACAATAAGCGGGATGTGGACA
AGGCGATTGAGCTGTACCAGGCGCTTCTCGAGAGCGCTTCTCCCTACCGC
CTGGACAATGTGGACACCTATTCCAATCTGCTGTTCGTCAAGGAGATGAA
AACCGAAATGGCACAGTTGGCCCACAAGGCTGTCAGCATCAACAAGTACC
GCCCGGAGACGTGTTGTGTAATAGGCAACTACTACAGTATCCGCTGTGAT
CACCAGGTGGCCATTTCCTACTTTCAACGCGCCCTGAAACTGAATCCCAA
GTAGCATTAGCTAAATTCAATCGCATCATAGACTCCACTTTGGAGCGACC
ACCAGTGGCCGTAGACTACTCCGGACTGCCCCAGCTGAGCAGTGCCACAC
TGCAGCAGCGCTTCAACCTGGCCTATCCGGAGTTGGTGAACCAACAGCAG
CAGCAGCAGCAGCAGTTGCAGCTGCAACAGCACCACCAGCAACATGATGC
GACCAAGCAGATCAGCAGCCTCCAGGGGAACCCCCGATTGGATCGTGGAA
CGGACGCCGTTGCCAGCACTCCATTAACACTTCAAGCACCCAGAACTCCA
GCAACGGCGACGGAGGAGCAACTTGATTCGGGGCATCCCCATGACGACGC
AGACGTCGTCGACCACGATGATCATCCCCACCACGACGAGGATAATCAAA
CGAAACGAAATGATGTGCATTATTTGTTGAAACAGTTGAATAGTTTTAGT
GATATAGAAGAAATAGAAATTGTTGATATGAAGCAAAGAGGTCAGCGGCC
GCCGATGGCGTCCAGTTCGTTGGCCACCATGATGCCGCCGCCCTCGCCAG
CACCGCCGGCATCGCCATCCACGCAGTCACATCGACTGGGTCCGCGGTTC
GCCTCCTCCGGCGACAGTTCGCTGGTCCTGCCGCAGCACCAGTTCGACGA
CTATCTGTTCGAGTCCTGCCACTACCTGGAGACAAACTACTTTGCCGCCA
CATACCGCACTGCCATGGTCGAGAGCAGCTCGCACGAGTTCCGGCCCTCG
ACCAACAGCAGCTCGAACAGCTTCGAGCTGCACGAGATGGAGCCGCCCAG
TGTCATCTGCAAGGCGGGCGTGCCGCCTCCACTGGTTTCCAGTCACCCTG
GTCATCCTGGTCATCCTGATCATCCGCCGCCGCGGTACCAATTCGAGTAC
CAGGCGGAGACCCGGCTGACCACCAGTGGGGTGCAGACGGAGCTCACCGT
CGAATCGCTGGCCAAGATGAGCAACTGCAGCGGGAGCAGCTCTTCCTCGT
CGGCGACGAGGGCTCCTCCCTTCTTCCGGTGCTGCTACACGCCCATCGAT
CGCTGGCGGGAGAGGAGGCAGCAGCAGAAGAGCTCCTCCGCCTCCTCGTC
CGCCGCACAGCCGCCCAAGAACGTCTGACACTGGGCGTGGCAGTCCACTT
GGAGACCCAACATGTGCCTGGCTAACTTAGATCAGGGATGCAAGCCAAGG
GGAATCGGGATGTTTTCGGAATTCACAATCATGGTTCGATTTAGTGGGTC
ATGTGAAAGTTCTCTACTTGAAAGTGAAGAAGATATCAAAAGCTTGTGGG
GATTGGAATTCATATCCACAAAACAGCTTTCCAAAATGATTTCAAGTTCC
AAATACTTCCCTCAAAACTTTTGTATCTAAAAAATAATTCTACATTTTCC
GAACCACTAGCCTTACGAAATATGGATATGATATAATCACGAGCGGCTTG
CATCCCTGTTATATTTTGGTCGCTGTTCTCATTTGCGATATCAACAAGAG
ATTCCATTTCGATCGACAGTCGATACACGAGTCATGAATCATTCATCACG
AATCCCTATCATTCGGTGAAAGTTCATAATGTACAATTTATATATGCTAA
AACGTAAACCAGAAATGTTAGTAAACAATTTTTATACACACATCACAGCC
ACACACAGACAGTCGCACATTTTTGCAATACACCAAAGTAAATGATTTGG
AAGTTTGTATAATTACCTAAGAGTTGTTACATGCTCAGCAGAAAACCAGG
ATAGCCACAACTACTGATTCCCATTAAACTTCACTGGCTTTCCCTCCCAG
CAATCCAGCATCCCAGCATTTCCCCCCTGAGCTAGCCAGGTTTTCCGCTG
GGCATCTACCTGAGCTGAACCCAACTTAGGCCTAATGTTGTATTCGAAAT
ACGAAGATATTGTTAAAAATGATTGATGGCAAGAGGGGGCGATAGGGGAG
GCGAGAGCTTGTATAGTAAGTTGATAATTAAATAGCATTATGGAGAATTG
TAGAATCACGTTGAAGGTGGCCAGATCAGCAGGACGAGGGCACTTTTGTT
TTAAGCCTATAGTCTACAGACTGTAGATTCTAAACTCTAGATTCCGATTC
TCTCGGCTAACCAAGTCCAAGGCAACTTGGGCAGATATCAGCGAGCGCCT
GGGGAAACCGAAGGGGAAACGGACACAAAGCAATTGTTACATCAATTAGA
CACTATATTCTGTTGACCTATCGTTTAACTCGATTATTGTTTCGGAAGAT
ACGCATTTAAGGAATTGTTGTTAGAGCACAAGAGATACAGATACAGATAC
AGATACAGATACTGGCTATGCGAGCAAACCGAATAGGACACAATTCAACT
CTAAGCCAACCAAGAGCAATATTAGTTCTAAAATCAGTTCGGATTCGTCA
ATTCTGTTGATAGCATATGCAAGTAACTAGCATAACTAACATACATCAAA
TATATCACTACCTTGAATAAGCCTTGAGATCACGCTTCGGTTTTTCGCAA
AATAAATATACATATATGAACAATGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

MIP23949.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 12:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 20449768..20452370 1023..3625 13015 100 Plus
chr2L 23010047 chr2L 20440731..20443246 1104..3625 12470 99.7 Plus
chr2L 23010047 chr2L 20448688..20449712 1..1025 5110 99.9 Plus
chr2L 23010047 chr2L 20457805..20458826 1..1025 5015 99.5 Plus
chr2L 23010047 chr2L 20458882..20458962 1023..1103 405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 12:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20451333..20453935 1023..3625 13015 100 Plus
2L 23513712 2L 20442296..20444811 1104..3625 12470 99.7 Plus
2L 23513712 2L 20450253..20451277 1..1025 5110 99.9 Plus
2L 23513712 2L 20459370..20460391 1..1025 5015 99.5 Plus
2L 23513712 2L 20460447..20460527 1023..1103 405 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:59:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20451333..20453935 1023..3625 13015 100 Plus
2L 23513712 2L 20442296..20444598 1104..3406 11500 99.9 Plus
2L 23513712 2L 20450253..20451277 1..1025 5110 99.9 Plus
2L 23513712 2L 20459370..20460391 1..1025 5025 99.5 Plus
2L 23513712 2L 20444575..20444811 3389..3625 1185 100 Plus
2L 23513712 2L 20460447..20460527 1023..1103 405 100 Plus
Blast to na_te.dros performed on 2019-03-16 12:50:03 has no hits.

MIP23949.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 12:51:10 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 20448688..20449711 1..1024 99 -> Plus
chr2L 20449770..20449986 1025..1241 100 == Plus
chr2L 20450040..20452370 1295..3625 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-24 11:05:07 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31687-RA 1..966 49..1014 100 == Plus
CG31687-RA 967..2148 1045..2228 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:40:22 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31687-RA 1..966 49..1014 100 == Plus
CG31687-RA 967..2148 1045..2228 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:34:52 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31687-RC 1..1056 49..1104 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:23 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31687-RC 1..1056 49..1104 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-24 11:05:06 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31688-RC 1649..3301 1100..2753 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:40:21 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31688-RC 1649..3301 1100..2753 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:34:52 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31687-RC 29..3653 1..3625 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:23 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
CG31687-RC 29..3653 1..3625 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:10 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20450253..20451276 1..1024 99 -> Plus
2L 20451335..20453935 1025..3625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:10 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20450253..20451276 1..1024 99 -> Plus
2L 20451335..20453935 1025..3625 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 12:51:10 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20450253..20451276 1..1024 99 -> Plus
2L 20451335..20453935 1025..3625 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:34:52 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20450253..20451276 1..1024 99 -> Plus
arm_2L 20451335..20453935 1025..3625 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:43:38 Download gff for MIP23949.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20450253..20451276 1..1024 99 -> Plus
2L 20451335..20453935 1025..3625 100   Plus

MIP23949.hyp Sequence

Translation from 0 to 1103

> MIP23949.hyp
PANKIVFIAFPNKSGTMAMQKFFSVLLPDVKRELRRGIIECSKRGLLHST
KWLAEMHHGLADVHIDNEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYD
VREYDRAAHAVRNCESSVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQ
MRDLADLLATLRMEYGKSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIR
LVPMLWSAYLELSPLIMEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDG
LKIYEDLQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQALLESASPYR
LDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCD
HQVAISYFQRALKLNPK*

MIP23949.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31687-PB 351 CG31687-PB 1..351 17..367 1829 100 Plus
CG31687-PC 351 CG31687-PC 1..351 17..367 1829 100 Plus
Cdc23-PB 678 CG2508-PB 1..350 17..367 1809 99.4 Plus
Cdc23-PA 678 CG2508-PA 1..350 17..367 1809 99.4 Plus

MIP23949.pep Sequence

Translation from 0 to 1103

> MIP23949.pep
PANKIVFIAFPSKSGTMAMQKFFSVLLPDVKRELRRGIIECSKRGLLHST
KWLAEMHHGLADVHIDNEAPDEDRTFSECQLEGIAPEEYSDYFLAKSYYD
VREYDRAAHAVRNCESSVPRFLHFYSSYMAREKRRLDSTTDQANLHEPNQ
MRDLADLLATLRMEYGKSRLDGYGIYLYGVVLKALNLNQAAEQMLVQAIR
LVPMLWSAYLELSPLIMEKKKLLSLQLGGHWMRHFFMAHTYLELYLNDDG
LKIYEDLQASGFSKSIYLIAQMALVYHNKRDVDKAIELYQALLESASPYR
LDNVDTYSNLLFVKEMKTEMAQLAHKAVSINKYRPETCCVIGNYYSIRCD
HQVAISYFQRALKLNPK*

MIP23949.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15120-PA 675 GF15120-PA 1..349 19..367 1767 94.3 Plus
Dana\GF23866-PA 908 GF23866-PA 584..684 265..366 156 31.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG21234-PA 677 GG21234-PA 1..350 17..367 1867 98.3 Plus
Dere\GG14987-PA 903 GG14987-PA 579..679 265..366 152 29.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10134-PA 707 GH10134-PA 1..348 19..367 1727 91.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG31687-PB 351 CG31687-PB 1..351 17..367 1829 100 Plus
CG31687-PC 351 CG31687-PC 1..351 17..367 1829 100 Plus
Cdc23-PB 678 CG2508-PB 1..350 17..367 1809 99.4 Plus
Cdc23-PA 678 CG2508-PA 1..350 17..367 1809 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22203-PA 701 GI22203-PA 1..348 19..367 1723 90.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26609-PA 681 GL26609-PA 1..348 19..367 1774 94.3 Plus
Dper\GL24900-PA 932 GL24900-PA 575..708 232..366 168 28.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28992-PA 681 GA28992-PA 1..348 19..367 1773 94.3 Plus
Dpse\GA21205-PA 932 GA21205-PA 575..708 232..366 168 28.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23349-PA 678 GM23349-PA 1..350 17..367 1882 99.4 Plus
Dsec\GM13783-PA 311 GM13783-PA 2..87 280..366 148 32.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24259-PA 678 GD24259-PA 1..350 17..367 1876 98.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20073-PA 691 GJ20073-PA 1..348 19..367 1763 92.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18267-PA 712 GK18267-PA 1..355 19..367 1610 84 Plus
Dwil\GK13137-PA 885 GK13137-PA 556..656 265..366 155 30.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13310-PA 676 GE13310-PA 1..349 17..367 1832 97.2 Plus
Dyak\GE20433-PA 905 GE20433-PA 581..681 265..366 152 29.4 Plus