Clone MIP24338 Report

Search the DGRC for MIP24338

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:243
Well:38
Vector:pOT2
Associated Gene/TranscriptCG13258-RA
Protein status:MIP24338.pep: gold
Sequenced Size:773

Clone Sequence Records

MIP24338.complete Sequence

773 bp assembled on 2010-08-11

GenBank Submission: BT125102.1

> MIP24338.complete
CAGGATTGCAATTTAGTTTATAAAATGGGTTTCAGAATTGTGCTCTTAGC
TGCCACCGGTCTGGGCGCCATGTACATGATGCATCTGCTCGCCCAGGATT
GGGTGAAGATCCGACCCATTCGCGGAATAACCCAACTAGCCGGAATGGCC
GCTCAGCCGATCCAACAGGTTATTGCACCCATTCAACAGGCCAGCGGGGC
TCTTAATTTATTCCGGAGCAGGAGAGAGGCCAGCCTGAATCACGAACTCG
GTTGGGTGCGAAGGACCCAAGATTCGGGTGGGGGCAATGGTGCCAGAGGT
GGGGGCGCGGATCACAGGCCACCACCTGCCGTCGATTGGAAGAGGATCCT
GTCGAGAGATCCCTTCGAGTGCCTGCAATCGTTGATATGCCAACTGATGT
CCGGAGCGGAAGCGAAAGTTCCAGAGGCTGAGTTGCTCATGGATTATCTG
GAGTCATCGCTGGAGCTGGCACCGGCCAAAATTGGTCGCGCCTTCAGTCG
AGGATTGGCCTTGAGAGGCAGCACGGAGCTGTGCTACAACGAATATCCAT
TTTGCCTCTACTCCGCCAAAACGATGTTGCGCATCCTGCGTTGGTTCAGT
GAATCGGGCGAATCGTTGCCCGTGGATAATGTGGCCTAGTTCGAACCCAG
TCTTCAGTTTACTCAAGAGAGAGAGTTGAAAGAGAAAGTGAAAATGTGAA
ACTATTTTTAATGATGTTAATAGAATATCAATAATAAATAAATGACAGGA
TATGATAAAAAAAAAAAAAAAAA

MIP24338.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 16290860..16291582 756..34 3570 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:09:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16292010..16292732 756..34 3615 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16292010..16292732 756..34 3615 100 Minus
2L 23513712 2L 16292960..16292994 35..1 175 100 Minus
Blast to na_te.dros performed on 2019-03-16 21:09:39 has no hits.

MIP24338.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:10:44 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 16290860..16291580 36..756 99 <- Minus
chr2L 16291811..16291845 1..35 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-11 17:02:06 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 1..615 25..639 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:50:26 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 1..615 25..639 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:13 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 1..615 25..639 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:10 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 1..615 25..639 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 17:02:06 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 1..615 25..639 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:50:26 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 1..615 25..639 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:13 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 31..786 1..756 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:10 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
CG13258-RA 31..786 1..756 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:10:44 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16292010..16292730 36..756 100 <- Minus
2L 16292960..16292994 1..35 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:10:44 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16292010..16292730 36..756 100 <- Minus
2L 16292960..16292994 1..35 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:10:44 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16292010..16292730 36..756 100 <- Minus
2L 16292960..16292994 1..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:13 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16292010..16292730 36..756 100 <- Minus
arm_2L 16292960..16292994 1..35 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:26:20 Download gff for MIP24338.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16292010..16292730 36..756 100 <- Minus
2L 16292960..16292994 1..35 100   Minus

MIP24338.pep Sequence

Translation from 0 to 638

> MIP24338.pep
QDCNLVYKMGFRIVLLAATGLGAMYMMHLLAQDWVKIRPIRGITQLAGMA
AQPIQQVIAPIQQASGALNLFRSRREASLNHELGWVRRTQDSGGGNGARG
GGADHRPPPAVDWKRILSRDPFECLQSLICQLMSGAEAKVPEAELLMDYL
ESSLELAPAKIGRAFSRGLALRGSTELCYNEYPFCLYSAKTMLRILRWFS
ESGESLPVDNVA*

MIP24338.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15329-PA 203 GF15329-PA 1..201 9..210 884 81.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24178-PA 318 GG24178-PA 114..318 10..212 937 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11434-PA 198 GH11434-PA 1..197 9..210 660 65.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13258-PA 204 CG13258-PA 1..204 9..212 1055 100 Plus
CG13258-PB 212 CG13258-PB 7..212 7..212 1040 98.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14736-PA 204 GI14736-PA 1..198 9..209 650 63.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:06:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL14098-PA 208 GL14098-PA 1..199 9..209 641 70 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12157-PA 208 GA12157-PA 1..199 9..209 636 69.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17915-PA 207 GM17915-PA 1..207 9..212 1059 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21925-PA 202 GD21925-PA 1..202 9..212 1044 98.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:06:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17167-PA 195 GJ17167-PA 1..193 9..211 671 67.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24745-PA 207 GK24745-PA 16..206 12..210 609 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19371-PA 209 GE19371-PA 1..209 9..212 942 92.4 Plus

MIP24338.hyp Sequence

Translation from 0 to 638

> MIP24338.hyp
QDCNLVYKMGFRIVLLAATGLGAMYMMHLLAQDWVKIRPIRGITQLAGMA
AQPIQQVIAPIQQASGALNLFRSRREASLNHELGWVRRTQDSGGGNGARG
GGADHRPPPAVDWKRILSRDPFECLQSLICQLMSGAEAKVPEAELLMDYL
ESSLELAPAKIGRAFSRGLALRGSTELCYNEYPFCLYSAKTMLRILRWFS
ESGESLPVDNVA*

MIP24338.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG13258-PA 204 CG13258-PA 1..204 9..212 1055 100 Plus
CG13258-PB 212 CG13258-PB 7..212 7..212 1040 98.1 Plus