Clone MIP24460 Report

Search the DGRC for MIP24460

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:244
Well:60
Vector:pOT2
Associated Gene/TranscriptCG13226-RA
Protein status:MIP24460.pep: gold
Sequenced Size:952

Clone Sequence Records

MIP24460.complete Sequence

952 bp assembled on 2010-08-11

GenBank Submission: BT125104.1

> MIP24460.complete
CCATTAGACTGTTACGGTTACGAAATGTATCTACGCGCGCGTTTGGCTCT
GCTGAGCCTTCTCTTCCTGATGGTCTCCGGTCAGAGGAGTAAGTCCCGGA
GTGAACGTCCTCAAGGCAGGACCTTGGGATTATTGACTCCCCTTTTACTG
GGAGGTGGTGGACCGCTCTTCGATGTTCCCCTGCCCGCAGGACCACCCAT
CAGACCAGGTGGTGGTTCATCCTCCGCAGCCGGAGGAGGCACCCAATCGG
ACTCATACTACGGCGGCAGTTATCCTAGCTACGGATACAGGCCCAACTAT
GGATACGGATATCCCAACTACGGTTATAACTATGGATACCCGGTCTTCGG
CTACGGCTATGGGCAGAACTACTACAGACCCAGCTACTACAATTATGGTG
GATACCAGAGACCGCAGCCCTATTATGGTTACCGGCCCACTTATAGCTCC
AGTGGAACTGCCGGATCAGGCGGTTATCCCTCATACAGCAGTTCAGCTGT
CATCTCAAGCTCTCCAACAAATTCGGCCGTTGGTTCGGCATCAGGAGCAG
GAGCAGTATCCGGAGGTGGAACCCCACAGCTATCCACCGCTCAGCAAGCC
CAGTTAGCCGGTCTTTTGGGTCAGGCCCTTGGCAGCAGTCTACGCCCTCT
TCTCGCCAATGGGGGCGGGGCAGCTGGAGCGACAGGAGCGGGAGCAAATC
CACAAGCGCTGAGCGGTCTACTCAGTCTGCTTGGCTAGACCATAAGAAGA
TCAGTATTAAGTAACAGATAGACACATTTATGATAAGTTATCAGACCCAT
AGCGAGTCTAATTATACCGAACTTCGAATCAAACTACATTTCAAAATCTA
TCATTGTTATCTTGTTTATTAATTTTAAATTAGTTTTAATAATTGTTTTT
GTTAGTCTAATTTCTTTATAAATTTTATTTCACTAAAAAAAAAAAAAAAA
AA

MIP24460.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:09:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7131729..7132662 1..934 4670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11244266..11245204 1..939 4695 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 11245465..11246403 1..939 4695 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:09:42 has no hits.

MIP24460.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:10:45 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7131729..7132662 1..934 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-11 17:07:34 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 25..738 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:50:29 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 25..738 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:48:17 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 25..738 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:08:11 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 25..738 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 17:07:33 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 25..738 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:50:29 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 1..714 25..738 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:48:17 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 13..946 1..934 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:11 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
CG13226-RA 20..953 1..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:10:45 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11244266..11245199 1..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:10:45 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11244266..11245199 1..934 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:10:45 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11244266..11245199 1..934 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:48:17 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7131771..7132704 1..934 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:26:22 Download gff for MIP24460.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11245465..11246398 1..934 100   Plus

MIP24460.pep Sequence

Translation from 0 to 737

> MIP24460.pep
PLDCYGYEMYLRARLALLSLLFLMVSGQRSKSRSERPQGRTLGLLTPLLL
GGGGPLFDVPLPAGPPIRPGGGSSSAAGGGTQSDSYYGGSYPSYGYRPNY
GYGYPNYGYNYGYPVFGYGYGQNYYRPSYYNYGGYQRPQPYYGYRPTYSS
SGTAGSGGYPSYSSSAVISSSPTNSAVGSASGAGAVSGGGTPQLSTAQQA
QLAGLLGQALGSSLRPLLANGGGAAGATGAGANPQALSGLLSLLG*

MIP24460.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12532-PA 240 GF12532-PA 1..214 9..218 291 62.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20174-PA 236 GG20174-PA 19..208 27..220 436 81.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19941-PA 241 GH19941-PA 1..210 9..218 236 48.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13226-PA 237 CG13226-PA 1..237 9..245 1251 100 Plus
CG13285-PA 198 CG13285-PA 58..171 101..211 156 37.7 Plus
CG13285-PB 154 CG13285-PB 58..144 101..189 152 42.9 Plus
Edg91-PB 151 CG7539-PB 1..142 17..189 149 35.3 Plus
Edg91-PA 159 CG7539-PA 9..150 17..189 149 35.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17715-PA 255 GL17715-PA 1..224 9..218 333 62.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:06:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24887-PA 253 GA24887-PA 1..224 9..218 337 63.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21263-PA 235 GM21263-PA 16..226 24..236 454 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10777-PA 237 GD10777-PA 1..237 9..245 1064 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15067-PA 270 GJ15067-PA 1..261 9..236 249 46.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12864-PA 231 GE12864-PA 1..222 9..236 317 82.5 Plus

MIP24460.hyp Sequence

Translation from 0 to 737

> MIP24460.hyp
PLDCYGYEMYLRARLALLSLLFLMVSGQRSKSRSERPQGRTLGLLTPLLL
GGGGPLFDVPLPAGPPIRPGGGSSSAAGGGTQSDSYYGGSYPSYGYRPNY
GYGYPNYGYNYGYPVFGYGYGQNYYRPSYYNYGGYQRPQPYYGYRPTYSS
SGTAGSGGYPSYSSSAVISSSPTNSAVGSASGAGAVSGGGTPQLSTAQQA
QLAGLLGQALGSSLRPLLANGGGAAGATGAGANPQALSGLLSLLG*

MIP24460.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:48:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG13226-PA 237 CG13226-PA 1..237 9..245 1251 100 Plus
CG13285-PA 198 CG13285-PA 58..171 101..211 156 37.7 Plus
CG13285-PB 154 CG13285-PB 58..144 101..189 152 42.9 Plus
Edg91-PB 151 CG7539-PB 1..142 17..189 149 35.3 Plus
Edg91-PA 159 CG7539-PA 9..150 17..189 149 35.3 Plus