Clone MIP24463 Report

Search the DGRC for MIP24463

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:244
Well:63
Vector:pOT2
Associated Gene/TranscriptCG4053-RB
Protein status:MIP24463.pep: gold
Sequenced Size:945

Clone Sequence Records

MIP24463.complete Sequence

945 bp assembled on 2010-08-11

GenBank Submission: BT125108.1

> MIP24463.complete
GTCCGGCATTGTCCCTCGTCTCGGAAATATTTGTTTTGGATGATGGCTGT
CCGTTTGTCTCTGATTTGGCTGCTTCTGCTGGGCACTTCCATTGACGTCA
CGCGCGGAAAGCGTTTGGACAATCGTAAACTTTTGGACAATCGCATTGTG
GGTGGCCAGGAGGCGGAGGACGGAGTGGCACCTTATCAGGTGTCCATTCA
GACCATCTGGAAAACCCACATCTGCAGCGGAGTCATTCTCAACGAACAGT
GGATCCTCACCGCGGGTCATTGTGCACTGGACTTTAGCATCGAGGATCTA
AGGATTATAGTGGGCACGAATGATCGTCTGGAGCCAGGACAGACCTTATT
TCCGGACGAGGCCCTAGTCCATTGCTTGTACGACATACCCTATGTCTACA
ATAATGACATAGCGTTGATCCATGTCAACGAGTCGATTATATTCAATGAT
CGCACCCAGATCGTTGAGTTGAGCCGAGAGCAACCTCCGGCGGGTTCCAC
GGTCACTCTGACGGGATGGGGTGCTCCGGAAAGTAGCTATCCCACAGTGC
AATATCTGCAGACCCTCAACCTGACCATCATCGCACACGAGGAGTGCAGA
GAGAGATGGGACTTTCACGATGGCATCGACATCGGTCATATTTGCACCTT
TACGCGAGAGGGCGAGGGTGCCTGCTCCGGAGACTCCGGTGGTCCACTGA
TGTGGGAGGGCAAACTGGTGGGCCTGGTCAACTGGGGCAGAGCCTGCGGC
GTCGGCATGCCAGACATGTATGCCAACACGGTTTACTATCAGGATTGGAT
CCGCAGGACTCATTCAGGATGCAAGAATCGTGTTAACTAAAAGAGATACA
AGGAGAGAGCGATTAACTGGCATCATTATGATGTATTTTTGTATAAATAT
GTGAAATAAATGTATTGACTAAAGCAAAAAAAAAAAAAAAAAAAA

MIP24463.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 12955853..12956622 770..1 3850 100 Minus
chr3R 27901430 chr3R 12955635..12955792 925..768 790 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17131429..17132198 770..1 3850 100 Minus
3R 32079331 3R 17131209..17131368 927..768 800 100 Minus
3R 32079331 3R 17128840..17128961 634..755 205 77.9 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 16872260..16873029 770..1 3850 100 Minus
3R 31820162 3R 16872040..16872199 927..768 800 100 Minus
3R 31820162 3R 16869671..16869792 634..755 205 77.8 Plus
Blast to na_te.dros performed on 2019-03-17 00:12:54 has no hits.

MIP24463.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:13:33 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 12955635..12955792 768..925 100 <- Minus
chr3R 12955856..12956622 1..767 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-11 17:21:02 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RA 1..732 40..771 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:50:34 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RB 1..798 43..840 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:32:02 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RB 1..798 43..840 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:14:25 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RB 1..798 43..840 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 17:21:02 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG31266-RB 1..115 768..882 100 <- Minus
CG31266-RB 179..945 1..767 100   Minus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:50:34 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RB 1..798 43..840 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:02 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RB 1..925 1..925 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:25 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
CG4053-RB 1..925 1..925 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:33 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17131211..17131368 768..925 100 <- Minus
3R 17131432..17132198 1..767 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:33 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17131211..17131368 768..925 100 <- Minus
3R 17131432..17132198 1..767 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:13:33 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17131211..17131368 768..925 100 <- Minus
3R 17131432..17132198 1..767 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:02 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12956933..12957090 768..925 100 <- Minus
arm_3R 12957154..12957920 1..767 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:26:29 Download gff for MIP24463.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16872263..16873029 1..767 100   Minus
3R 16872042..16872199 768..925 100 <- Minus

MIP24463.hyp Sequence

Translation from 0 to 839

> MIP24463.hyp
VRHCPSSRKYLFWMMAVRLSLIWLLLLGTSIDVTRGKRLDNRKLLDNRIV
GGQEAEDGVAPYQVSIQTIWKTHICSGVILNEQWILTAGHCALDFSIEDL
RIIVGTNDRLEPGQTLFPDEALVHCLYDIPYVYNNDIALIHVNESIIFND
RTQIVELSREQPPAGSTVTLTGWGAPESSYPTVQYLQTLNLTIIAHEECR
ERWDFHDGIDIGHICTFTREGEGACSGDSGGPLMWEGKLVGLVNWGRACG
VGMPDMYANTVYYQDWIRRTHSGCKNRVN*

MIP24463.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG4053-PB 265 CG4053-PB 1..265 15..279 1434 100 Plus
CG31265-PA 266 CG31265-PA 36..260 48..273 597 50 Plus
CG31269-PB 273 CG31269-PB 3..261 20..273 558 44.6 Plus
CG5255-PA 273 CG5255-PA 28..252 47..271 531 47.6 Plus
CG5246-PA 272 CG5246-PA 39..263 46..269 525 43.6 Plus

MIP24463.pep Sequence

Translation from 39 to 839

> MIP24463.pep
MMAVRLSLIWLLLLGTSIDVTRGKRLDNRKLLDNRIVGGQEAEDGVAPYQ
VSIQTIWKTHICSGVILNEQWILTAGHCALDFSIEDLRIIVGTNDRLEPG
QTLFPDEALVHCLYDIPYVYNNDIALIHVNESIIFNDRTQIVELSREQPP
AGSTVTLTGWGAPESSYPTVQYLQTLNLTIIAHEECRERWDFHDGIDIGH
ICTFTREGEGACSGDSGGPLMWEGKLVGLVNWGRACGVGMPDMYANTVYY
QDWIRRTHSGCKNRVN*

MIP24463.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17861-PA 252 GF17861-PA 1..251 14..265 1162 84.5 Plus
Dana\GF19903-PA 267 GF19903-PA 37..261 35..260 575 48.7 Plus
Dana\GF17133-PA 278 GF17133-PA 28..250 34..255 536 48 Plus
Dana\GF17132-PA 272 GF17132-PA 19..263 22..256 527 42.5 Plus
Dana\GF17863-PA 269 GF17863-PA 26..255 33..260 525 43.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:56:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16789-PA 264 GG16789-PA 1..264 2..266 1290 91.7 Plus
Dere\GG22028-PA 266 GG22028-PA 36..260 35..260 588 49.6 Plus
Dere\GG22017-PA 273 GG22017-PA 24..261 22..260 548 46 Plus
Dere\GG22071-PA 273 GG22071-PA 28..250 34..255 531 46.4 Plus
Dere\GG22061-PA 272 GG22061-PA 39..263 33..256 518 44.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14251-PA 154 GH14251-PA 1..154 113..266 587 65.6 Plus
Dgri\GH14062-PA 266 GH14062-PA 1..260 1..260 586 45.3 Plus
Dgri\GH14066-PA 271 GH14066-PA 6..260 8..254 551 46.3 Plus
Dgri\GH14067-PA 282 GH14067-PA 16..249 23..255 524 44.7 Plus
Dgri\GH14252-PA 282 GH14252-PA 2..273 4..263 516 41.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:28:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4053-PB 265 CG4053-PB 1..265 2..266 1434 100 Plus
CG31265-PA 266 CG31265-PA 36..260 35..260 597 50 Plus
CG31269-PB 273 CG31269-PB 3..261 7..260 558 44.6 Plus
CG5255-PA 273 CG5255-PA 28..252 34..258 531 47.6 Plus
CG5246-PA 272 CG5246-PA 39..263 33..256 525 43.6 Plus
CG17477-PA 267 CG17477-PA 23..253 32..260 517 42.7 Plus
CG17475-PB 288 CG17475-PB 48..277 34..263 495 43.3 Plus
CG17475-PA 288 CG17475-PA 48..277 34..263 495 43.3 Plus
CG31266-PB 282 CG31266-PB 51..279 35..261 453 40.1 Plus
CG31267-PA 275 CG31267-PA 43..272 34..261 416 36.4 Plus
CG31954-PA 277 CG31954-PA 47..276 32..260 347 34.2 Plus
CG11911-PA 277 CG11911-PA 1..271 6..259 330 36.7 Plus
epsilonTry-PA 256 CG18681-PA 5..252 3..257 326 33.3 Plus
Ser6-PA 259 CG2071-PA 28..255 32..256 325 33.6 Plus
zetaTry-PA 280 CG12387-PA 10..279 11..260 318 31.9 Plus
CG1304-PA 260 CG1304-PA 1..254 1..255 310 30.6 Plus
iotaTry-PA 252 CG7754-PA 9..245 7..254 309 35.6 Plus
CG17571-PB 258 CG17571-PB 30..251 35..254 300 28.7 Plus
CG17571-PA 258 CG17571-PA 30..251 35..254 300 28.7 Plus
etaTry-PA 262 CG12386-PA 25..256 33..256 298 32.1 Plus
thetaTry-PA 262 CG12385-PA 32..255 33..254 298 29.6 Plus
CG8299-PA 260 CG8299-PA 1..252 2..254 295 31.9 Plus
CG6048-PA 362 CG6048-PA 45..284 35..254 289 33.5 Plus
betaTry-PB 253 CG18211-PB 27..249 32..254 286 31 Plus
betaTry-PA 253 CG18211-PA 27..249 32..254 286 31 Plus
CG31681-PA 264 CG31681-PA 26..252 33..257 286 32.3 Plus
Ser8-PA 260 CG4812-PA 31..253 32..254 283 31.4 Plus
Try29F-PD 267 CG9564-PD 22..261 11..254 282 31 Plus
Try29F-PC 267 CG9564-PC 22..261 11..254 282 31 Plus
CG17239-PB 248 CG17239-PB 20..237 32..254 281 32.3 Plus
CG17239-PA 248 CG17239-PA 20..237 32..254 281 32.3 Plus
lambdaTry-PA 272 CG12350-PA 32..259 32..257 280 31.2 Plus
gammaTry-PA 253 CG30028-PA 27..249 32..254 279 32.5 Plus
CG30025-PA 253 CG30025-PA 27..249 32..254 279 32.5 Plus
deltaTry-PA 253 CG12351-PA 27..249 32..254 279 32.5 Plus
CG30031-PA 253 CG30031-PA 27..249 32..254 279 32.5 Plus
CG32523-PA 262 CG32523-PA 9..256 11..254 278 31.2 Plus
CG9676-PA 251 CG9676-PA 15..245 23..254 276 29.1 Plus
CG11192-PB 279 CG11192-PB 25..259 33..254 276 33.2 Plus
alphaTry-PA 256 CG18444-PA 27..252 32..257 273 31 Plus
Corin-PC 1397 CG2105-PC 1093..1344 20..255 273 32.2 Plus
Corin-PB 1397 CG2105-PB 1093..1344 20..255 273 32.2 Plus
CG32269-PB 332 CG32269-PB 93..324 20..253 272 29.1 Plus
CG32269-PA 332 CG32269-PA 93..324 20..253 272 29.1 Plus
CG3916-PA 267 CG3916-PA 30..257 35..254 269 35.2 Plus
CG32808-PA 284 CG32808-PA 27..258 33..257 268 33.5 Plus
CG4653-PA 254 CG4653-PA 31..249 42..254 266 28.1 Plus
CG34458-PA 257 CG34458-PA 29..253 33..256 265 30.6 Plus
CG16749-PA 265 CG16749-PA 29..260 35..257 265 32.3 Plus
CG13430-PB 267 CG13430-PB 8..262 2..257 263 30.2 Plus
CG13430-PA 267 CG13430-PA 8..262 2..257 263 30.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23142-PA 269 GI23142-PA 16..269 15..266 954 67.3 Plus
Dmoj\GI24438-PA 269 GI24438-PA 20..263 21..260 593 47.8 Plus
Dmoj\GI24441-PA 272 GI24441-PA 40..264 33..257 561 48.5 Plus
Dmoj\GI23144-PA 284 GI23144-PA 38..274 28..263 520 44.1 Plus
Dmoj\GI24442-PA 279 GI24442-PA 26..252 30..255 500 45.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:56:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27213-PA 266 GL27213-PA 20..266 19..266 1094 80.2 Plus
Dper\GL27272-PA 264 GL27272-PA 1..258 1..260 635 48.9 Plus
Dper\GL27271-PA 271 GL27271-PA 1..259 1..260 547 43.1 Plus
Dper\GL27275-PA 273 GL27275-PA 40..264 33..256 547 47.1 Plus
Dper\GL27214-PA 286 GL27214-PA 1..274 2..262 504 41.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17920-PA 266 GA17920-PA 20..266 19..266 1091 79.8 Plus
Dpse\GA16138-PA 271 GA16138-PA 1..259 1..260 546 43.1 Plus
Dpse\GA18759-PA 273 GA18759-PA 40..264 33..256 546 47.1 Plus
Dpse\GA16134-PA 290 GA16134-PA 1..232 1..234 545 47 Plus
Dpse\GA18766-PA 280 GA18766-PA 2..252 6..255 540 42.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:56:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15382-PA 264 GM15382-PA 1..264 2..266 1378 98.1 Plus
Dsec\GM15210-PA 266 GM15210-PA 36..260 35..260 571 48.2 Plus
Dsec\GM15215-PA 273 GM15215-PA 3..250 8..255 542 45.6 Plus
Dsec\GM15213-PA 272 GM15213-PA 39..263 33..256 510 43.2 Plus
Dsec\GM15384-PA 267 GM15384-PA 27..253 36..260 506 42.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20248-PA 264 GD20248-PA 1..264 2..266 1362 97.4 Plus
Dsim\GD19141-PA 266 GD19141-PA 36..260 35..260 578 49.1 Plus
Dsim\GD19140-PA 274 GD19140-PA 25..262 22..260 539 46.4 Plus
Dsim\GD19145-PA 273 GD19145-PA 28..250 34..255 532 47.3 Plus
Dsim\GD19144-PA 272 GD19144-PA 39..263 33..256 511 43.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10445-PA 269 GJ10445-PA 17..269 15..266 981 69.6 Plus
Dvir\GJ10713-PA 268 GJ10713-PA 25..262 18..260 618 48.6 Plus
Dvir\GJ10717-PA 272 GJ10717-PA 21..261 19..254 546 45.7 Plus
Dvir\GJ10718-PA 280 GJ10718-PA 31..253 34..255 507 46 Plus
Dvir\GJ10446-PA 290 GJ10446-PA 46..279 30..262 499 43.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10883-PA 268 GK10883-PA 3..268 5..266 1112 76 Plus
Dwil\GK12196-PA 282 GK12196-PA 1..263 6..266 611 45.3 Plus
Dwil\GK12195-PA 272 GK12195-PA 34..260 33..260 552 47.8 Plus
Dwil\GK12200-PA 276 GK12200-PA 43..267 33..256 535 45.8 Plus
Dwil\GK12201-PA 260 GK12201-PA 13..236 33..255 530 46.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:56:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26104-PA 264 GE26104-PA 1..263 2..265 1361 97 Plus
Dyak\GE24614-PA 266 GE24614-PA 36..260 35..260 576 48.7 Plus
Dyak\GE24613-PA 274 GE24613-PA 6..262 2..260 550 44.8 Plus
Dyak\GE10113-PA 277 GE10113-PA 3..250 8..255 536 44.8 Plus
Dyak\GE10112-PA 272 GE10112-PA 39..263 33..256 509 42.7 Plus