Clone MIP24579 Report

Search the DGRC for MIP24579

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:245
Well:79
Vector:pOT2
Associated Gene/TranscriptCG14424-RA
Protein status:MIP24579.pep: gold
Sequenced Size:1064

Clone Sequence Records

MIP24579.complete Sequence

1064 bp assembled on 2010-08-11

GenBank Submission: BT125087.1

> MIP24579.complete
CCCTCGTCCAGCGACAGACCCAAGCCCAAGTCCAAGTCCAAGTCCACATC
AAATCCAAGTTCACAAGAAGATCCCATATATACATCATTATGGCAATTAA
GTTGGTAGCCCTTTTGACCATCGGACTGGCAATCTTTGCCGCGTGCGAAG
CCCGCCATGTGAGCGGACACCATCGCAGGCAGCATTTTGAGCAGCGTGCC
CTCATAGCGAAGCCCCACAGTGGTCCCCAGGGACGAGTCTTCCCCGGTGC
CGTGGCCATTAAGAAGCTGGTTCTGCTTAAGTTCAAGAAGATCGTGCCCA
TCTCTCTGATCCTGCTGAAGTCAAGCAACGAGAACGAGGCCGAGCTGGTG
CCCGTCTATCCCACCGATCAGATTCCCGAGAACGTTCAGTTCATCCCGAC
ACCCAATGGAATTTCCGGTCACAAGGATGTCCAGGCCATCGCCATTCCTG
CCGAGCTGCACGACCAGCTGCAGATCAACGGTCTGTCCAACCTGGAGAAC
ATCGAGGCTCTGCTGCAGAGCAGCTCGATCTCGGCTGCCGACAATGAAGG
CGAGGCCCCCGTGGGCAACAGCATTGCCGTAGCCCAGCCCGAGGATGTGG
TACTGGAGCAGCCAGAGAACGATGAGGATCAGCTGTTAGACGGAGCCGCT
CCAGTCGCCGCTCCTGTAGCCGTCGCTCCCGCCGCCCTGCGCCGCCTATC
CGCCGACGAGCTGCTCCGCTCCGGCGTGCGCAACTCTGCCCAGCAGCAGC
AGACCAGCGTGGAGGAGATACCCCTGCTTCTGTACTCCGCCAACGAGGGC
TCCTCCTCCGCCGGAAACTCGGGACGTCGCTTTGTGGCCGCCGCTCCGGC
ACAGCGCCGTCGCCAGCAGTTCTACAACTAGGATCCTTTAATTTAAACAA
GCAACCTATCCAAACTTCCACATTCCTTCTCTCGATGGCTGTCACACGGG
CTTCACTGTACTAGGTGTACTTACACTACCACTGGCTATTCTACATTTTT
TTTTTAGACTGAACTGAATATAAATTAACGTTATGAGCGAAATGACAAAA
AAAAAAAAAAAAAA

MIP24579.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2819661..2820558 1046..149 4430 99.6 Minus
chrX 22417052 chrX 2820886..2821035 150..1 735 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2925880..2926781 1050..149 4510 100 Minus
X 23542271 X 2927109..2927258 150..1 750 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2933978..2934879 1050..149 4510 100 Minus
X 23527363 X 2935207..2935356 150..1 750 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:16:15 has no hits.

MIP24579.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:53 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2819661..2820556 151..1046 99 <- Minus
chrX 2820886..2821035 1..150 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-11 16:05:35 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..792 90..881 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:50:04 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..792 90..881 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:04:18 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..792 90..881 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:33 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..792 90..881 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-11 16:05:34 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..792 90..881 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:50:04 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..792 90..881 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:04:18 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..1046 1..1046 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:33 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
CG14424-RA 1..1046 1..1046 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:53 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
X 2925884..2926779 151..1046 100 <- Minus
X 2927109..2927258 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:53 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
X 2925884..2926779 151..1046 100 <- Minus
X 2927109..2927258 1..150 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:53 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
X 2925884..2926779 151..1046 100 <- Minus
X 2927109..2927258 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:04:18 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2819917..2820812 151..1046 100 <- Minus
arm_X 2821142..2821291 1..150 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:25:54 Download gff for MIP24579.complete
Subject Subject Range Query Range Percent Splice Strand
X 2933982..2934877 151..1046 100 <- Minus
X 2935207..2935356 1..150 100   Minus

MIP24579.hyp Sequence

Translation from 2 to 880

> MIP24579.hyp
LVQRQTQAQVQVQVHIKSKFTRRSHIYIIMAIKLVALLTIGLAIFAACEA
RHVSGHHRRQHFEQRALIAKPHSGPQGRVFPGAVAIKKLVLLKFKKIVPI
SLILLKSSNENEAELVPVYPTDQIPENVQFIPTPNGISGHKDVQAIAIPA
ELHDQLQINGLSNLENIEALLQSSSISAADNEGEAPVGNSIAVAQPEDVV
LEQPENDEDQLLDGAAPVAAPVAVAPAALRRLSADELLRSGVRNSAQQQQ
TSVEEIPLLLYSANEGSSSAGNSGRRFVAAAPAQRRRQQFYN*

MIP24579.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG14424-PA 263 CG14424-PA 1..263 30..292 1304 100 Plus

MIP24579.pep Sequence

Translation from 2 to 880

> MIP24579.pep
LVQRQTQAQVQVQVHIKSKFTRRSHIYIIMAIKLVALLTIGLAIFAACEA
RHVSGHHRRQHFEQRALIAKPHSGPQGRVFPGAVAIKKLVLLKFKKIVPI
SLILLKSSNENEAELVPVYPTDQIPENVQFIPTPNGISGHKDVQAIAIPA
ELHDQLQINGLSNLENIEALLQSSSISAADNEGEAPVGNSIAVAQPEDVV
LEQPENDEDQLLDGAAPVAAPVAVAPAALRRLSADELLRSGVRNSAQQQQ
TSVEEIPLLLYSANEGSSSAGNSGRRFVAAAPAQRRRQQFYN*

MIP24579.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22470-PA 274 GF22470-PA 1..274 30..292 1003 82.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18599-PA 267 GG18599-PA 1..267 30..292 1285 94.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12265-PA 268 GH12265-PA 1..268 30..292 885 72 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG14424-PA 263 CG14424-PA 1..263 30..292 1304 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10960-PA 265 GI10960-PA 1..265 30..292 824 72.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19786-PA 287 GL19786-PA 1..287 30..292 923 75.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12974-PA 277 GA12974-PA 1..277 30..292 971 79.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18846-PA 266 GM18846-PA 1..266 30..292 1307 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16347-PA 89 GD16347-PA 38..89 244..292 219 86.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:03:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15276-PA 269 GJ15276-PA 1..269 30..292 824 73.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25393-PA 266 GK25393-PA 4..266 44..291 866 76.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:03:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16911-PA 266 GE16911-PA 1..266 30..292 1279 95.1 Plus