Clone MIP25040 Report

Search the DGRC for MIP25040

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:250
Well:40
Vector:pOT2
Associated Gene/TranscriptCG9593-RB
Protein status:MIP25040.pep: gold
Sequenced Size:1286

Clone Sequence Records

MIP25040.complete Sequence

1286 bp assembled on 2010-08-20

GenBank Submission: BT125577.1

> MIP25040.complete
AATCGAAATGATGAAGTTTTCATTGCTTTTTCTGCTGGCCTGGAGCTGTG
TGTTTCTGGGAAGCACGGGTTCTCTAAATCGGATTGGGAATTCTGATATA
GGCTTTAAATCCTTGGAGGAGCTAGTCTTGATTAGAAAGACTTTGGCTGC
ACAGGCACTAAAGCTAAGGGGCTTGGAGATAAATCTGCATCGCGTGCTCA
GCAAGGTGGTGTTACTCGCCGATGCAGTTGTGCAAGTACCTGGAAGATAC
TCCTCCAAAGAAGATCCCCTTGCCGTTCTATCTGAACGTCTAAATTTGTT
GCTGGAGCGACTGAACCAGGAAGAAAGAATATCTACGAATTTGCTGGAAC
TCAAAGAGTGGTCAACTAAAGTGTGCCAAGAACCTTCCCCAAGCCAGACC
TTACCAAAGGAACTTACTGAAGAAAAGGACGAGCCGAAAGTGGACTTTTA
CCAGCCCGCCAAATCCGATTGCCATGAGCTTGACGAAGGTGTCCGGGTGG
ATGGCGTCTATAGGTTTCTGGTTCCGGAGCGCAATGAAGTCCAGCGTGAT
TTGTACGAGCGTTATTGCGCCTTCGCCACCGACGGCCCCGCCTGGACAGT
GATCCAGAGTAGAGGCGGCTCCTTCGATCCGCACGAAAATTTCAATCGCA
GCTGGGACGAGTATCGCGCGGGTTTTGGTAACTTATCCCGAGACTTCTGG
TTTGGCAACGAGTTCGCGCACAAGATTCTCTACCGCGACGATCATGAGCT
GAGAATTGAGCTGCAGGAGGCAGGGGAACCGCTGGATTGGGCGGAGTATC
CACTCTTCTGGCTAGACAGCGAGAGTTATAACTATCAGCTTTCGGTGGCT
GGTGAATTCCGTGGTTCACTACCGGACGCTCTGGAGCAGCACAATCGGAT
GGATTTCAGCACTTACGATCGGCGAAGGAACCACGCGAAATCGGCAGATT
CCACCTGTGGCGAGGATTACGGTGGTGGCTGGTGGTTTGATCGCTGCACA
CAGTGCAATCTGAATGGAGAACATGGTGTCCACCAGAGAGCAAGTCCAGC
CATTATCTGGATGAACTGGCGGACCGGGACCGATAAACCGAAGAGCTCGC
GGATGATGATTCGACCCGTAAATCCCACTCCGGGCGATAACTCTGATGGG
GATTAGGCGGCGGAGAACTGGGAAATTTAAATAGCAATTCCAATCAAATG
TTGCACGTATTTCTGCAATTGAACGTTACCGATAGTTGGCACTGCAAATA
AACGTTACCGATAGGAATCGAAAAAAAAAAAAAAAA

MIP25040.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11627432..11628259 443..1270 4125 99.9 Plus
chr3R 27901430 chr3R 11626945..11627375 13..443 2155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15802826..15803655 443..1272 4150 100 Plus
3R 32079331 3R 15802339..15802769 13..443 2155 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15543657..15544486 443..1272 4150 100 Plus
3R 31820162 3R 15543170..15543600 13..443 2155 100 Plus
Blast to na_te.dros performed 2019-03-16 11:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker4 7359 Stalker4 STALKER4 7359bp 2604..2657 71..18 117 68.5 Minus
Stalker 7256 Stalker STALKER 7256bp 2498..2551 71..18 117 68.5 Minus

MIP25040.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:38 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11626946..11627375 14..443 100 -> Plus
chr3R 11627433..11628259 444..1270 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-20 16:06:42 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RA 70..390 119..439 100 == Plus
CG9593-RA 391..1092 455..1156 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:39:27 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RA 70..390 119..439 100 == Plus
CG9593-RA 391..1092 455..1156 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:30 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RB 1..1149 8..1156 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:08:58 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RB 1..1149 8..1156 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-20 16:06:41 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RA 70..390 119..439 100 == Plus
CG9593-RA 391..1092 455..1156 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:39:27 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RA 70..390 119..439 100 == Plus
CG9593-RA 391..1092 455..1156 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:30 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RB 1..1270 1..1270 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:08:58 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
CG9593-RB 1..1270 1..1270 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:38 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15802340..15802769 14..443 100 -> Plus
3R 15802827..15803653 444..1270 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:38 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15802340..15802769 14..443 100 -> Plus
3R 15802827..15803653 444..1270 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:38 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15802340..15802769 14..443 100 -> Plus
3R 15802827..15803653 444..1270 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:30 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11628062..11628491 14..443 100 -> Plus
arm_3R 11628549..11629375 444..1270 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:42:35 Download gff for MIP25040.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15543171..15543600 14..443 100 -> Plus
3R 15543658..15544484 444..1270 100   Plus

MIP25040.pep Sequence

Translation from 1 to 1155

> MIP25040.pep
IEMMKFSLLFLLAWSCVFLGSTGSLNRIGNSDIGFKSLEELVLIRKTLAA
QALKLRGLEINLHRVLSKVVLLADAVVQVPGRYSSKEDPLAVLSERLNLL
LERLNQEERISTNLLELKEWSTKVCQEPSPSQTLPKELTEEKDEPKVDFY
QPAKSDCHELDEGVRVDGVYRFLVPERNEVQRDLYERYCAFATDGPAWTV
IQSRGGSFDPHENFNRSWDEYRAGFGNLSRDFWFGNEFAHKILYRDDHEL
RIELQEAGEPLDWAEYPLFWLDSESYNYQLSVAGEFRGSLPDALEQHNRM
DFSTYDRRRNHAKSADSTCGEDYGGGWWFDRCTQCNLNGEHGVHQRASPA
IIWMNWRTGTDKPKSSRMMIRPVNPTPGDNSDGD*

MIP25040.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18543-PA 308 GF18543-PA 1..306 4..384 611 41.1 Plus
Dana\GF12573-PA 434 GF12573-PA 141..415 86..372 304 29.2 Plus
Dana\GF19159-PA 338 GF19159-PA 150..334 188..372 300 35.8 Plus
Dana\GF13288-PA 288 GF13288-PA 49..272 136..372 277 31.8 Plus
Dana\GF19835-PA 256 GF19835-PA 15..246 131..372 272 31.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16954-PA 366 GG16954-PA 23..366 40..384 1463 81.7 Plus
Dere\GG10629-PA 417 GG10629-PA 126..400 86..372 326 29.6 Plus
Dere\GG22162-PA 291 GG22162-PA 17..273 89..372 314 32.4 Plus
Dere\GG20632-PA 246 GG20632-PA 21..245 139..372 310 32.2 Plus
Dere\GG22161-PA 288 GG22161-PA 71..278 160..372 297 31.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:16:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18241-PA 333 GH18241-PA 17..325 41..382 626 44.9 Plus
Dgri\GH10950-PA 350 GH10950-PA 7..347 35..372 325 28.9 Plus
Dgri\GH20551-PA 273 GH20551-PA 5..264 89..372 322 33.7 Plus
Dgri\GH10782-PA 258 GH10782-PA 7..255 85..372 309 30.8 Plus
Dgri\GH22894-PA 214 GH22894-PA 32..212 189..374 297 38 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9593-PB 382 CG9593-PB 1..382 3..384 2055 100 Plus
CG8642-PB 429 CG8642-PB 138..412 86..372 336 29.3 Plus
CG30281-PA 291 CG30281-PA 51..273 136..372 312 34.3 Plus
CG30280-PD 288 CG30280-PD 91..278 185..372 310 32.6 Plus
CG41520-PD 627 CG41520-PD 428..617 188..375 296 35.7 Plus
CG41520-PA 745 CG41520-PA 546..735 188..375 296 35.7 Plus
CG5550-PA 246 CG5550-PA 28..245 146..372 294 31.5 Plus
CG5550-PB 250 CG5550-PB 28..249 146..372 279 30.9 Plus
CG1889-PC 332 CG1889-PC 144..328 188..372 276 33.2 Plus
CG1889-PA 332 CG1889-PA 144..328 188..372 276 33.2 Plus
CG1889-PD 338 CG1889-PD 150..334 188..372 276 33.2 Plus
CG9500-PB 292 CG9500-PB 105..286 189..372 274 33.9 Plus
sca-PB 799 CG17579-PB 541..734 156..371 268 32.7 Plus
sca-PA 799 CG17579-PA 541..734 156..371 268 32.7 Plus
CG10359-PG 459 CG10359-PG 276..451 198..374 254 34.3 Plus
CG10359-PE 485 CG10359-PE 302..477 198..374 254 34.3 Plus
CG31832-PB 227 CG31832-PB 15..191 150..339 248 30.5 Plus
CG6788-PA 358 CG6788-PA 181..355 198..372 242 32.6 Plus
CG1791-PB 195 CG1791-PB 17..192 198..373 239 32.4 Plus
CG1791-PC 333 CG1791-PC 155..330 198..373 239 32.4 Plus
CG1791-PA 334 CG1791-PA 156..331 198..373 239 32.4 Plus
CG41520-PB 729 CG41520-PB 546..719 188..375 230 31.1 Plus
CG7668-PC 422 CG7668-PC 258..421 195..373 176 31 Plus
CG7668-PA 422 CG7668-PA 258..421 195..373 176 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10197-PA 386 GI10197-PA 1..366 4..372 649 40.7 Plus
Dmoj\GI20776-PA 378 GI20776-PA 122..376 93..375 309 32 Plus
Dmoj\GI18379-PA 330 GI18379-PA 74..327 106..373 306 30.8 Plus
Dmoj\GI18820-PA 211 GI18820-PA 2..202 164..372 295 35 Plus
Dmoj\GI10115-PA 380 GI10115-PA 163..377 146..372 292 31.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22237-PA 392 GL22237-PA 1..375 4..378 900 49.9 Plus
Dper\GL25691-PA 472 GL25691-PA 292..469 189..372 310 37.2 Plus
Dper\GL25703-PA 356 GL25703-PA 81..353 98..372 307 29.9 Plus
Dper\GL26043-PA 453 GL26043-PA 266..450 188..372 304 36.1 Plus
Dper\GL18754-PA 239 GL18754-PA 9..236 142..374 302 32.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21900-PA 383 GA21900-PA 31..379 44..382 889 52.1 Plus
Dpse\GA21900-PB 390 GA21900-PB 38..386 44..382 889 52.1 Plus
Dpse\GA25394-PA 281 GA25394-PA 101..278 189..372 309 38.6 Plus
Dpse\GA21232-PA 434 GA21232-PA 134..413 81..372 306 28.3 Plus
Dpse\GA25261-PA 262 GA25261-PA 66..250 189..372 297 35.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24261-PA 377 GM24261-PA 1..377 3..384 1766 90.1 Plus
Dsec\GM20674-PA 418 GM20674-PA 127..401 86..372 325 29.6 Plus
Dsec\GM15883-PA 292 GM15883-PA 51..274 136..372 323 33.9 Plus
Dsec\GM15881-PA 288 GM15881-PA 71..278 160..372 306 32.1 Plus
Dsec\GM21726-PA 246 GM21726-PA 21..245 139..372 289 30.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19049-PA 377 GD19049-PA 1..377 3..384 1767 89.8 Plus
Dsim\GD11645-PA 292 GD11645-PA 22..274 94..372 308 30.6 Plus
Dsim\GD11644-PA 288 GD11644-PA 91..278 185..372 300 32.1 Plus
Dsim\GD11221-PA 246 GD11221-PA 21..245 139..372 293 30.5 Plus
Dsim\GD24781-PA 332 GD24781-PA 144..328 188..372 271 33.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23485-PA 403 GJ23485-PA 41..393 40..382 638 43 Plus
Dvir\GJ21847-PA 226 GJ21847-PA 37..217 189..372 316 40.2 Plus
Dvir\GJ20511-PA 390 GJ20511-PA 212..387 195..375 315 39 Plus
Dvir\GJ23826-PA 241 GJ23826-PA 40..240 165..372 309 32.9 Plus
Dvir\GJ11293-PA 258 GJ11293-PA 73..255 182..372 301 35.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14064-PA 189 GK14064-PA 60..188 242..384 308 48.3 Plus
Dwil\GK20369-PA 234 GK20369-PA 22..231 160..375 292 34.5 Plus
Dwil\GK19386-PA 223 GK19386-PA 30..213 189..372 287 36.8 Plus
Dwil\GK19592-PA 195 GK19592-PA 9..191 189..372 285 34.6 Plus
Dwil\GK15364-PA 211 GK15364-PA 4..206 162..372 285 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24340-PA 364 GE24340-PA 23..364 40..384 1504 83 Plus
Dyak\GE22879-PA 418 GE22879-PA 128..402 86..372 332 29.9 Plus
Dyak\GE12242-PA 288 GE12242-PA 51..274 136..372 313 34.7 Plus
Dyak\GE12241-PA 288 GE12241-PA 71..278 160..372 297 31.7 Plus
Dyak\GE11822-PA 246 GE11822-PA 21..245 139..372 294 30.5 Plus

MIP25040.hyp Sequence

Translation from 14 to 1155

> MIP25040.hyp
KFSLLFLLAWSCVFLGSTGSLNRIGNSDIGFKSLEELVLIRKTLAAQALK
LRGLEINLHRVLSKVVLLADAVVQVPGRYSSKEDPLAVLSERLNLLLERL
NQEERISTNLLELKEWSTKVCQEPSPSQTLPKELTEEKDEPKVDFYQPAK
SDCHELDEGVRVDGVYRFLVPERNEVQRDLYERYCAFATDGPAWTVIQSR
GGSFDPHENFNRSWDEYRAGFGNLSRDFWFGNEFAHKILYRDDHELRIEL
QEAGEPLDWAEYPLFWLDSESYNYQLSVAGEFRGSLPDALEQHNRMDFST
YDRRRNHAKSADSTCGEDYGGGWWFDRCTQCNLNGEHGVHQRASPAIIWM
NWRTGTDKPKSSRMMIRPVNPTPGDNSDGD*

MIP25040.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9593-PB 382 CG9593-PB 3..382 1..380 2045 100 Plus
CG8642-PB 429 CG8642-PB 138..412 82..368 336 29.3 Plus
CG30281-PA 291 CG30281-PA 51..273 132..368 312 34.3 Plus
CG30280-PB 272 CG30280-PB 75..262 181..368 310 32.6 Plus
CG5550-PA 246 CG5550-PA 28..245 142..368 294 31.5 Plus