Clone MIP25078 Report

Search the DGRC for MIP25078

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:250
Well:78
Vector:pOT2
Associated Gene/TranscriptCG17283-RA
Protein status:MIP25078.pep: gold
Sequenced Size:1602

Clone Sequence Records

MIP25078.complete Sequence

1602 bp assembled on 2010-08-20

GenBank Submission: BT125575.1

> MIP25078.complete
CGAAGCATGCGGTGCAGGATCTTGGTGCTGTGTGCATTCATATGCCTCCT
TGTAATTTTGACCGAGGCCAGGCAGAGGAAAGTTAACCATTCCGCTGATA
GAAGATCATTGGCAGTCAGAAGTGGACACAGGAATGAGCGGAGTAGTGCT
CTTCATGGAAGAGGATTGGCTGCACGATCAAGGAATCAAAGGAAACGCAG
ATTAAATGCTGCCAAGAGAAGCAGGAGGAAGCGTAACTTGGCTAGAAAGT
CAAATCGGAAAATTAGGGCCAAGACCGAGTCAATCGTTAGAAGTGATTCT
AGTTACGCTACTTTACCATTGGACTTCCAACAGAACTTCGTGCGAACCAC
CGACAACCTGCGATCGGAGAAGGCCTTTTTGGCCAATCGATATGGCTTTA
GTTTTGCCAAAAGTTCTGGAACGGCTACTTTGAAAAACACGGCGAACATG
GAGTATACCTGCAAAATGAACATTGGTACACCCAAGCAGAAGTTCACAGT
TCTTCCGGACACCGGAAGTTCGAATATTTGGGTGCCAGGACCGCATTGCA
AGAGTAAGGCCTGCAAGAAACACAAACAATATCATCCGGCCAAGTCAAGT
ACCTATGTTAAGAATGGGAAATCCTTTGCCATCACCTACGGTTCGGGTAG
TGTGGCAGGAGTTCTGGCCAAGGATACGGTGAGAATAGCTGGGCTGGTTG
TGACCAATCAAACTTTCGCCATGACCACCAAGGAACCGGGAACCACTTTC
GTGACCTCAAATTTCGATGGTATACTAGGGCTGGGATATCGATCCATAGC
GGTGGACAATGTGAAGACCCTGGTGCAGAATATGTGCTCGGAGGATGTGA
TCACCAGTTGCAAGTTTGCCATTTGCATGAAGGGCGGCGGCAGTTCCTCT
CGAGGTGGTGCAATAATCTTCGGCAGCTCCAATACAAGTGCTTATAGCGG
ATCCAATAGCTACACATACACTCCGGTGACCAAAAAGGGTTACTGGCAGT
TCACTCTGCAGGACATTTACGTGGGCGGCACCAAAGTGAGCGGCTCGGTG
CAGGCCATTGTGGATTCCGGAACTTCATTGATCACAGCTCCGACGGCCAT
CTACAACAAGATCAACAAGGTCATCGGATGCAGGGCTACCTCCAGCGGAG
AGTGTTGGATGAAGTGCGCCAAGAAAATACCCGACTTCACCTTTGTCATC
GCGGGCAAGAAGTTCGTCGTCAAGGGTAACAAAATGAAATTAAAGGTGAG
GACCAACAGAGGCAGGACAGTCTGCATATCGGCGGTAACTGAAGTTCCCG
ACGAGCCAGTGATCCTGGGCGATGCCTTCATCCGGCATTTCTGCACGGAA
TTCGACTTGGCCAACAATCGCATTGGATTCGCTGCCACTACGTATTCCAC
TTAGACTTATCTGTATTAACTTATAATGCAGCTGATCTCGCATAGACGAT
CATTTTAAATTGTAGTACACTTGTAACTTGAAGCTTCCTGTTCCTATGTA
ACTTCTAAAATTGTTGTCAAGTTAAATCATTTTGCTAAGTATGTATATAT
AACTTTTTCATATATTAAAAGTATTCGTTTTAAATAAAAAAAAAAAAAAA
AA

MIP25078.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 11:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 13232236..13233820 1..1585 7790 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 11:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17407876..17409465 1..1590 7950 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 17148707..17150296 1..1590 7950 100 Plus
Blast to na_te.dros performed on 2019-03-16 11:14:30 has no hits.

MIP25078.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 11:15:28 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 13232236..13233820 1..1585 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-08-20 16:06:39 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1398 7..1404 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:39:24 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1398 7..1404 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 11:38:17 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1398 7..1404 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:11 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1398 7..1404 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-20 16:06:39 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1398 7..1404 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:39:24 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1579 7..1585 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:38:17 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1585 1..1585 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:11 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
CG17283-RA 1..1585 1..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:28 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17407876..17409460 1..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:28 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17407876..17409460 1..1585 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 11:15:28 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17407876..17409460 1..1585 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:38:17 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13233598..13235182 1..1585 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:42:32 Download gff for MIP25078.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17148707..17150291 1..1585 100   Plus

MIP25078.pep Sequence

Translation from 0 to 1403

> MIP25078.pep
RSMRCRILVLCAFICLLVILTEARQRKVNHSADRRSLAVRSGHRNERSSA
LHGRGLAARSRNQRKRRLNAAKRSRRKRNLARKSNRKIRAKTESIVRSDS
SYATLPLDFQQNFVRTTDNLRSEKAFLANRYGFSFAKSSGTATLKNTANM
EYTCKMNIGTPKQKFTVLPDTGSSNIWVPGPHCKSKACKKHKQYHPAKSS
TYVKNGKSFAITYGSGSVAGVLAKDTVRIAGLVVTNQTFAMTTKEPGTTF
VTSNFDGILGLGYRSIAVDNVKTLVQNMCSEDVITSCKFAICMKGGGSSS
RGGAIIFGSSNTSAYSGSNSYTYTPVTKKGYWQFTLQDIYVGGTKVSGSV
QAIVDSGTSLITAPTAIYNKINKVIGCRATSSGECWMKCAKKIPDFTFVI
AGKKFVVKGNKMKLKVRTNRGRTVCISAVTEVPDEPVILGDAFIRHFCTE
FDLANNRIGFAATTYST*

MIP25078.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 14:15:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16404-PA 463 GF16404-PA 1..463 3..464 1488 62.3 Plus
Dana\GF19728-PA 390 GF19728-PA 24..390 105..465 770 43 Plus
Dana\GF14369-PA 371 GF14369-PA 22..368 105..461 762 42.6 Plus
Dana\GF16402-PA 300 GF16402-PA 1..297 167..461 659 41.8 Plus
Dana\GF11236-PA 388 GF11236-PA 61..385 144..461 651 42.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 14:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22180-PA 465 GG22180-PA 1..465 3..467 2064 84.5 Plus
Dere\GG24067-PA 372 GG24067-PA 22..369 105..461 778 43.7 Plus
Dere\GG22202-PA 395 GG22202-PA 28..392 105..461 774 41.7 Plus
Dere\GG23678-PA 392 GG23678-PA 29..387 111..461 690 41.2 Plus
Dere\GG10707-PA 390 GG10707-PA 28..387 105..461 662 41.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 14:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24623-PA 374 GH24623-PA 22..371 105..461 719 41.8 Plus
Dgri\GH24344-PA 373 GH24344-PA 21..370 105..461 695 40 Plus
Dgri\GH21578-PA 388 GH21578-PA 61..385 144..461 650 43 Plus
Dgri\GH24624-PA 446 GH24624-PA 35..386 105..462 639 38.1 Plus
Dgri\GH19747-PA 390 GH19747-PA 60..386 141..461 611 38.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17283-PA 465 CG17283-PA 1..465 3..467 2400 100 Plus
Bace-PB 372 CG13095-PB 22..369 105..461 741 43.4 Plus
Bace-PA 372 CG13095-PA 22..369 105..461 741 43.4 Plus
CG5863-PA 395 CG5863-PA 28..392 105..461 734 41.1 Plus
CG17134-PA 391 CG17134-PA 25..386 107..461 693 42.9 Plus
Pgcl-PA 407 CG13374-PA 22..377 98..461 645 39.9 Plus
CG6508-PA 423 CG6508-PA 27..385 106..461 632 38.4 Plus
cathD-PC 392 CG1548-PC 65..389 144..461 629 43 Plus
cathD-PB 392 CG1548-PB 65..389 144..461 629 43 Plus
cathD-PA 392 CG1548-PA 65..389 144..461 629 43 Plus
CG33128-PA 405 CG33128-PA 68..402 131..461 626 39.8 Plus
CG10104-PA 404 CG10104-PA 51..400 118..461 540 35.6 Plus
CG31926-PB 410 CG31926-PB 77..406 139..461 488 35 Plus
CG31926-PA 410 CG31926-PA 77..406 139..461 488 35 Plus
CG5860-PA 370 CG5860-PA 56..367 144..461 446 30.5 Plus
CG31928-PB 418 CG31928-PB 26..415 85..461 420 30.3 Plus
CG31928-PA 418 CG31928-PA 26..415 85..461 420 30.3 Plus
CG31661-PA 393 CG31661-PA 77..390 141..461 390 34.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 14:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11125-PA 371 GI11125-PA 22..368 105..461 761 42.9 Plus
Dmoj\GI11126-PA 421 GI11126-PA 23..385 105..464 716 40.6 Plus
Dmoj\GI11124-PA 373 GI11124-PA 22..370 105..461 706 40.7 Plus
Dmoj\GI20282-PA 392 GI20282-PA 30..388 102..461 631 37.9 Plus
Dmoj\GI14567-PA 402 GI14567-PA 81..399 143..461 628 40.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 14:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23570-PA 464 GL23570-PA 1..464 3..464 1614 67.3 Plus
Dper\GL23572-PA 393 GL23572-PA 20..390 98..461 784 41.6 Plus
Dper\GL25647-PA 373 GL25647-PA 23..370 105..461 774 43.1 Plus
Dper\GL26637-PA 387 GL26637-PA 15..382 97..461 749 43.1 Plus
Dper\GL15694-PA 401 GL15694-PA 11..397 56..461 687 35.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 14:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14439-PA 464 GA14439-PA 1..464 3..464 1612 67.6 Plus
Dpse\GA19187-PA 393 GA19187-PA 20..390 98..461 788 41.6 Plus
Dpse\GA25369-PA 373 GA25369-PA 23..370 105..461 774 43.1 Plus
Dpse\GA22213-PA 373 GA22213-PA 23..370 105..461 773 43.1 Plus
Dpse\GA14340-PA 387 GA14340-PA 15..382 97..461 754 43.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15227-PA 465 GM15227-PA 1..465 3..467 2258 93.5 Plus
Dsec\GM12869-PA 372 GM12869-PA 22..369 105..461 775 43.1 Plus
Dsec\GM15229-PA 395 GM15229-PA 28..392 105..461 770 41.4 Plus
Dsec\GM18746-PA 392 GM18746-PA 25..387 107..461 711 42.9 Plus
Dsec\GM19043-PA 407 GM19043-PA 21..377 97..461 674 40.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19153-PA 463 GD19153-PA 1..463 3..467 2257 94.2 Plus
Dsim\GD19155-PA 395 GD19155-PA 28..392 105..461 763 41.1 Plus
Dsim\GD10217-PA 324 GD10217-PA 2..321 149..461 644 43 Plus
Dsim\GD23099-PA 405 GD23099-PA 19..402 72..461 641 36.7 Plus
Dsim\GD23735-PA 404 GD23735-PA 17..366 115..461 616 38.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 14:15:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15983-PA 372 GJ15983-PA 22..369 105..461 756 43.4 Plus
Dvir\GJ15982-PA 374 GJ15982-PA 22..371 105..461 736 42.1 Plus
Dvir\GJ15984-PA 423 GJ15984-PA 27..386 105..463 627 36.8 Plus
Dvir\GJ22010-PA 394 GJ22010-PA 67..390 144..461 626 39.8 Plus
Dvir\GJ17077-PA 404 GJ17077-PA 83..401 143..461 614 39.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 14:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11643-PA 473 GK11643-PA 1..472 3..464 1413 60.9 Plus
Dwil\GK11645-PA 388 GK11645-PA 15..385 98..461 774 39.7 Plus
Dwil\GK24836-PA 372 GK24836-PA 27..369 110..461 765 42.3 Plus
Dwil\GK21682-PA 389 GK21682-PA 27..386 105..461 657 40.9 Plus
Dwil\GK19045-PA 411 GK19045-PA 11..408 56..461 640 35.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10127-PA 465 GE10127-PA 1..465 3..467 2215 91 Plus
Dyak\GE10927-PA 372 GE10927-PA 22..369 105..461 775 43.1 Plus
Dyak\GE10129-PA 396 GE10129-PA 28..393 105..461 763 40.2 Plus
Dyak\GE18491-PA 392 GE18491-PA 25..387 107..461 711 43.4 Plus
Dyak\GE23596-PA 392 GE23596-PA 30..389 105..461 662 41.1 Plus

MIP25078.hyp Sequence

Translation from 0 to 1403

> MIP25078.hyp
RSMRCRILVLCAFICLLVILTEARQRKVNHSADRRSLAVRSGHRNERSSA
LHGRGLAARSRNQRKRRLNAAKRSRRKRNLARKSNRKIRAKTESIVRSDS
SYATLPLDFQQNFVRTTDNLRSEKAFLANRYGFSFAKSSGTATLKNTANM
EYTCKMNIGTPKQKFTVLPDTGSSNIWVPGPHCKSKACKKHKQYHPAKSS
TYVKNGKSFAITYGSGSVAGVLAKDTVRIAGLVVTNQTFAMTTKEPGTTF
VTSNFDGILGLGYRSIAVDNVKTLVQNMCSEDVITSCKFAICMKGGGSSS
RGGAIIFGSSNTSAYSGSNSYTYTPVTKKGYWQFTLQDIYVGGTKVSGSV
QAIVDSGTSLITAPTAIYNKINKVIGCRATSSGECWMKCAKKIPDFTFVI
AGKKFVVKGNKMKLKVRTNRGRTVCISAVTEVPDEPVILGDAFIRHFCTE
FDLANNRIGFAATTYST*

MIP25078.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG17283-PA 465 CG17283-PA 1..465 3..467 2400 100 Plus
Bace-PB 372 CG13095-PB 22..369 105..461 741 43.4 Plus
Bace-PA 372 CG13095-PA 22..369 105..461 741 43.4 Plus
CG5863-PA 395 CG5863-PA 28..392 105..461 734 41.1 Plus
CG17134-PA 391 CG17134-PA 25..386 107..461 693 42.9 Plus