Clone MIP25881 Report

Search the DGRC for MIP25881

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:258
Well:81
Vector:pOT2
Associated Gene/TranscriptCG6280-RA
Protein status:MIP25881.pep: gold
Sequenced Size:3726

Clone Sequence Records

MIP25881.complete Sequence

3726 bp assembled on 2010-10-19

GenBank Submission: BT125722.1

> MIP25881.complete
CAGGGTCGCACGAAAAGAGCACCTGAAAACCGATATTGCATCGAGTTCGA
TTTCCCCGCCAAAAAAAAAAAAACGAAAATAAAATAATAATAAGAAGAGA
AATACACTTTTGTGCCATTGCAGACGAGCTCGGCGGCGAATTACAATTGT
TTTAATCGAATAGAAAAGTGATTATAAGTGCGTTTTAATTGTGCGGCAAT
CAATATAAATAATTGAGTGTTTTCATTTCATTTGGCCTGGCCGCATACAA
ATTCTACGACAAAACACGAATAAATAAATTCCATCGCGCAGTATTTAATG
GATGCAGCTCCATGTGGCCCCACCGCCACCAACGACATCTGCTAACGGCG
GCAGCCACGCTCTGCTGTCTCTTGGCCATCATCGTCCAGCCGGCCCTTTC
GGATGAGCCCCCCATCCTTACATCCTCATCAACACCACCATCCTCAGCAG
CAGTCTCGGCCCCTGGCGATCTCCCCCAGAATTTGACGGTGGAGGCAGCG
GCCACTGAAGCCCTGAGTGACAGCAGCGGCAAGGAGCTTAATAAGCAGCC
AGCCGAGCAACTCATCCGCGAGGTCATCGAAGGTCCAAACTTGGCCGACG
AAGTGCGCGTGGATCCGGATCTGGAGAGGGAACTCAAACGGGAAGGGGAA
GATCCTATAGAAACAGAAACCGAAACGGAGTTCGTCGGTGTTCCAGGCTT
TCTGCCCACTGCTCTGCCTCCCAAAGATTCAGACAGTCCCACCAATGGAC
ATGGTTACATCCAGTTCGAGATCAACGATGAGCTGCCAGTGGAAGTGGCT
CGTCGACAAAGACCCATTGAGCAGACAGTGACCCGCTCGCGAACGGAAAC
CGTGAACGAGGTGCTGTCCAATCTGTTCCCCAAGGGATTCTCGGACATTT
TCCGATTTAGTGGCAATACAGATACATCCACCACCACGTCTACGACCACG
AATAAGGCGGTGGTCCGGCCAACAGTTGTGGATGTGGTCAGTACCACAGA
GGCAGCCAGCACTGAAAAGCAAACGAAGCCTCCAGCGCCGAATGCCACCT
ACTACAGTTACCAAACCACAGTCACGAAGGAATACCGTCGAGAATTGGGA
CCAGGTCACACGGAGATAGTGGTTGAGCAGATTAGGGATCCGGGATTCCG
AGATGGCAGTAACCACATTTCCCGAGATGAGCTGCTTAGGATCAATCGAG
CTGCTGTGGCGGCTCCAGTGCTGCCCAGTGTGCTGCTCCAACCGGAGGGC
GATGACAACGAGACTCTAGTGGCAGCAGAAAGTTCTCCAATTGTGATCCT
GGGCGAACACGATCCGGACCTGGAAGAGGGGCAGGAGATCAATGACAACC
AGATTGCGGAGACACGCCACGTGGGCCGGGAGGCCTACCAGCAGCGAGTT
CCAGTTCCAAATTTCAATGGCATCGAGAGTTATGCCAACCAAAAGGGTCC
CGGTCAGGATCAGGAGATCAATGTGCACATCGTACACGACGGACCACAGG
GAAAACCTCAGCAGGCAGAGGCAAAGACACCCAAGGAGTCCCAGTCGCAG
CCTGCGCAGCAGGCCTTGGATCACTTCCAGGCGCACAGTGAGCAGAGATT
CCAGCAGCATCATCCCAGTCAAGAGGCACCATCACGGCAATTCCTCAAGA
GCTTCAATCCCATTGTCTCCGGAAGTGGCGACGGACCCCTCCCGAAGGGC
AGTTTCCACTACGAGGTGCAGAATCCTCCACAGCGCCCGAATCCACGGAC
GCCGAAGGAAGGAGACTACGCCGGCCAATTTGTGAAACCTGCTGCCCAGT
TGGCCTATCAACAGGAGCTTAGCCAGGTGATACCACAAGAGCAGAGCAAG
CCGCAGCAGCAGTCGGAGTTGCTGCACACCAAGGCCATATCGTCGCCTGC
GCCGGATGTCCAGCAATATTCTGGCTATGCAGGTCCCACACCCGTTTCCG
CCACTCCAAATAGTCTGGTGTTTGTGACCTTGAACACTCCAAGTCCACCC
CACTCCTCGGCGGCACCATCCATTGCGCATACGCCATTTGAGCCAGGAGT
CCAGATCACAGTGAATCACCCGGCTCCCCATAACTACGTTGCCGAGGCTC
ATGCCGAGCCCTCCCAGACCATCATCCAACATGCTCCAGCTCCAGCTCCA
AAGAAGTCCACTCCATACACCTTTGTGGAGGTTCAGAAGTCTGTGAACAT
CCACAACAAGCTAATCACGGAGAAGGATGGCCGATTGGTGGAGCAGCACG
AGACCATTTACCCCCAGCCATATCCGCAGAATCACCTTTCGCAGGCACCT
GATCCTTCCAAGAGTTACGCATCTCTGGCTAAAAATCCTATTCACGTGGA
ATACGATAGTACGCCCCAGGAAGTGGCCGTCTCGCATGCCTCCGTCCATT
TGGATACAAATCATTCCGGACTCACAGCTCCAGGTCATAGTGAACAAACG
GTTCACCCAGGTCCAGTGTATACGCAACCAGAGCAACACCCGGAGCCCCA
GATACATCAGATTCATCAAGATCATCACATAATCCATCATGAGCCTCAGC
CAGAGCATGAGCCTCACTTGCATCAAGATCACCTGGAGCATCATGAGCAT
CCCTCACTGCAGCCATATCACGTGGAAAAACTTAAAGACCACGATCATCA
TGTCAAACAGGTGGTGGAGAAGCACATACCCATACCATATGCCGTTCCAC
AACCTGTGCCCGTGCCTGTCCACGTGGAGCACTACGTGGATCGTCCGTAC
CCAGTGGAGACCATTGTCGAACATCCCGTTCCATATCCCGTGGAGAGGGT
GGTGGAGAAAATCGTCGAGAAGCATGTGCCCGTTGAGGTGGAGCGCATTG
TGGAGAAGCCCGTGCATGTGGAGAAGATTGTGGAAAAGTTTGTGGACCGA
CCGATGGCGATTCCGATACATGTCCCCGTGGCCATTCACATGCCCATGCC
GCCGGGACACTCCTCGCTGTCATTTCCCCACTACTCCCACCCCAATTCCC
TAACGCCCTGGACCCACTCCGTTGCCCACATTCCACCGAAAGTGTTGCAA
AACTATTACACACGGATGCTGAAGAAGTTGCTGCCACAGCTCACCGCCAA
AACCCCTATCCCCCAATCTCCCAAAGCGGTCAAGTTGAGCAAGCCGGTGG
CGGCCATCAAGCAACCAGTGAAACCCGTGAGGGGAGAGGCGCCCAAGGTC
GCCACCTTCAGTTTGGCTGACATGAAATTCGACCTTCGACCTCCACCGCC
GCCACAGGGCTCACCTTGGTTGCAGGGATCCCGATATATCTATAATACCC
TTCCCGCCGATTTGGCCACCGCCGCCGCCTCGACTCCCACCAAAATGGTT
AAGTCCTACATTGGCGTCGTTCCAGCTCCAACATCTGCGAACTCAGACGT
TGGGGATTCCCCGCTCACCAGCGAGTTCGATGAGTTCCAGCGATGGCGCA
ACGGACACTCCCTGAAGCGCAGTCCCGACTTCGGGCGCAATCTTCAGCTG
GAGTATGGATTTAAGCCCCCTTTGGTGCCGTCCATGGAGATCGACGACAA
GGGCAATCCCCTCAAGCAAGCCGAACAATCGGAGACCCAGTGAAATTGAA
GCTGGTAGAGCGGAGAAAAAGCGTGCCAAAATATAATGTTATAGTAAATA
TTATCTATTTATATAATGTATTTAAAGCAAAGCATTTAATAAAATTATAT
TAACTTTAAAAAAAAAAAAAAAAAAA

MIP25881.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 9644120..9646302 1525..3707 10690 99.3 Plus
chr2R 21145070 chr2R 9643227..9644065 688..1526 4150 99.6 Plus
chr2R 21145070 chr2R 9641295..9641600 1..307 1440 98.7 Plus
chr2R 21145070 chr2R 9642669..9642899 306..536 1155 100 Plus
chr2R 21145070 chr2R 9642953..9643106 535..688 755 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:58:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13756789..13758977 1525..3713 10930 100 Plus
2R 25286936 2R 13755896..13756734 688..1526 4180 99.9 Plus
2R 25286936 2R 13753964..13754269 1..307 1485 99.7 Plus
2R 25286936 2R 13755338..13755568 306..536 1155 100 Plus
2R 25286936 2R 13755622..13755775 535..688 770 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 13757988..13760176 1525..3713 10930 99.9 Plus
2R 25260384 2R 13757095..13757933 688..1526 4180 99.8 Plus
2R 25260384 2R 13755163..13755468 1..307 1495 99.6 Plus
2R 25260384 2R 13756537..13756767 306..536 1155 100 Plus
2R 25260384 2R 13756821..13756974 535..688 770 100 Plus
Blast to na_te.dros performed 2019-03-17 00:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
Circe 7450 Circe CIRC 7450bp 2754..2828 3623..3700 121 65.4 Plus

MIP25881.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:59:17 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 9642955..9643106 537..688 99 -> Plus
chr2R 9642671..9642899 308..536 100 -> Plus
chr2R 9643228..9644065 689..1526 99 -> Plus
chr2R 9644122..9646302 1527..3707 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-10-19 12:22:51 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3282 312..3593 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:43:09 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3282 312..3593 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:20:08 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3282 312..3593 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:41:32 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3282 312..3593 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-19 12:22:51 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3282 312..3593 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:43:09 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3282 312..3593 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:20:08 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3706 1..3707 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:41:32 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
CG6280-RA 1..3706 1..3707 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:59:17 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13753964..13754269 1..307 99 -> Plus
2R 13755340..13755568 308..536 100 -> Plus
2R 13755624..13755775 537..688 100 -> Plus
2R 13755897..13756734 689..1526 99 -> Plus
2R 13756791..13758971 1527..3707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:59:17 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13753964..13754269 1..307 99 -> Plus
2R 13755340..13755568 308..536 100 -> Plus
2R 13755624..13755775 537..688 100 -> Plus
2R 13755897..13756734 689..1526 99 -> Plus
2R 13756791..13758971 1527..3707 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:59:17 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13753964..13754269 1..307 99 -> Plus
2R 13755340..13755568 308..536 100 -> Plus
2R 13755624..13755775 537..688 100 -> Plus
2R 13755897..13756734 689..1526 99 -> Plus
2R 13756791..13758971 1527..3707 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:20:08 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9643129..9643280 537..688 100 -> Plus
arm_2R 9641469..9641774 1..307 99 -> Plus
arm_2R 9642845..9643073 308..536 100 -> Plus
arm_2R 9643402..9644239 689..1526 99 -> Plus
arm_2R 9644296..9646476 1527..3707 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:50:11 Download gff for MIP25881.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13755163..13755468 1..307 99 -> Plus
2R 13756539..13756767 308..536 100 -> Plus
2R 13756823..13756974 537..688 100 -> Plus
2R 13757096..13757933 689..1526 99 -> Plus
2R 13757990..13760170 1527..3707 100   Plus

MIP25881.pep Sequence

Translation from 311 to 3592

> MIP25881.pep
MWPHRHQRHLLTAAATLCCLLAIIVQPALSDEPPILTSSSTPPSSAAVSA
PGDLPQNLTVEAAATEALSDSSGKELNKQPAEQLIREVIEGPNLADEVRV
DPDLERELKREGEDPIETETETEFVGVPGFLPTALPPKDSDSPTNGHGYI
QFEINDELPVEVARRQRPIEQTVTRSRTETVNEVLSNLFPKGFSDIFRFS
GNTDTSTTTSTTTNKAVVRPTVVDVVSTTEAASTEKQTKPPAPNATYYSY
QTTVTKEYRRELGPGHTEIVVEQIRDPGFRDGSNHISRDELLRINRAAVA
APVLPSVLLQPEGDDNETLVAAESSPIVILGEHDPDLEEGQEINDNQIAE
TRHVGREAYQQRVPVPNFNGIESYANQKGPGQDQEINVHIVHDGPQGKPQ
QAEAKTPKESQSQPAQQALDHFQAHSEQRFQQHHPSQEAPSRQFLKSFNP
IVSGSGDGPLPKGSFHYEVQNPPQRPNPRTPKEGDYAGQFVKPAAQLAYQ
QELSQVIPQEQSKPQQQSELLHTKAISSPAPDVQQYSGYAGPTPVSATPN
SLVFVTLNTPSPPHSSAAPSIAHTPFEPGVQITVNHPAPHNYVAEAHAEP
SQTIIQHAPAPAPKKSTPYTFVEVQKSVNIHNKLITEKDGRLVEQHETIY
PQPYPQNHLSQAPDPSKSYASLAKNPIHVEYDSTPQEVAVSHASVHLDTN
HSGLTAPGHSEQTVHPGPVYTQPEQHPEPQIHQIHQDHHIIHHEPQPEHE
PHLHQDHLEHHEHPSLQPYHVEKLKDHDHHVKQVVEKHIPIPYAVPQPVP
VPVHVEHYVDRPYPVETIVEHPVPYPVERVVEKIVEKHVPVEVERIVEKP
VHVEKIVEKFVDRPMAIPIHVPVAIHMPMPPGHSSLSFPHYSHPNSLTPW
THSVAHIPPKVLQNYYTRMLKKLLPQLTAKTPIPQSPKAVKLSKPVAAIK
QPVKPVRGEAPKVATFSLADMKFDLRPPPPPQGSPWLQGSRYIYNTLPAD
LATAAASTPTKMVKSYIGVVPAPTSANSDVGDSPLTSEFDEFQRWRNGHS
LKRSPDFGRNLQLEYGFKPPLVPSMEIDDKGNPLKQAEQSETQ*

MIP25881.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:42:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20398-PA 1080 GG20398-PA 1..1080 1..1093 4596 87.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21030-PA 1139 GH21030-PA 12..1133 1..1085 2380 52.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6280-PA 1093 CG6280-PA 1..1093 1..1093 5803 100 Plus
CG16886-PA 373 CG16886-PA 67..360 585..906 254 29.5 Plus
CG16886-PB 358 CG16886-PB 67..350 585..894 250 29.7 Plus
CG11584-PB 662 CG11584-PB 57..648 353..939 188 21.7 Plus
CG13138-PC 549 CG13138-PC 122..279 726..880 176 34.5 Plus
CG13138-PB 549 CG13138-PB 122..279 726..880 176 34.5 Plus
CG30101-PA 328 CG30101-PA 41..207 766..962 170 29 Plus
CG30101-PA 328 CG30101-PA 199..312 767..876 167 39.8 Plus
CG16885-PA 270 CG16885-PA 93..235 768..915 165 33.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:42:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18632-PA 1075 GI18632-PA 1..1071 1..1088 2358 53.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:42:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17471-PA 1103 GL17471-PA 1..1103 1..1093 2749 59.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19484-PA 1102 GA19484-PA 1..1102 1..1093 2758 59.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21486-PA 1091 GM21486-PA 1..1091 1..1093 5064 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10981-PA 1097 GD10981-PA 1..1097 1..1093 5013 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:42:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21644-PA 2064 GJ21644-PA 982..2060 1..1088 2590 54.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12559-PA 1089 GE12559-PA 1..1089 1..1093 4734 89.8 Plus

MIP25881.hyp Sequence

Translation from 311 to 3592

> MIP25881.hyp
MWPHRHQRHLLTAAATLCCLLAIIVQPALSDEPPILTSSSTPPSSAAVSA
PGDLPQNLTVEAAATEALSDSSGKELNKQPAEQLIREVIEGPNLADEVRV
DPDLERELKREGEDPIETETETEFVGVPGFLPTALPPKDSDSPTNGHGYI
QFEINDELPVEVARRQRPIEQTVTRSRTETVNEVLSNLFPKGFSDIFRFS
GNTDTSTTTSTTTNKAVVRPTVVDVVSTTEAASTEKQTKPPAPNATYYSY
QTTVTKEYRRELGPGHTEIVVEQIRDPGFRDGSNHISRDELLRINRAAVA
APVLPSVLLQPEGDDNETLVAAESSPIVILGEHDPDLEEGQEINDNQIAE
TRHVGREAYQQRVPVPNFNGIESYANQKGPGQDQEINVHIVHDGPQGKPQ
QAEAKTPKESQSQPAQQALDHFQAHSEQRFQQHHPSQEAPSRQFLKSFNP
IVSGSGDGPLPKGSFHYEVQNPPQRPNPRTPKEGDYAGQFVKPAAQLAYQ
QELSQVIPQEQSKPQQQSELLHTKAISSPAPDVQQYSGYAGPTPVSATPN
SLVFVTLNTPSPPHSSAAPSIAHTPFEPGVQITVNHPAPHNYVAEAHAEP
SQTIIQHAPAPAPKKSTPYTFVEVQKSVNIHNKLITEKDGRLVEQHETIY
PQPYPQNHLSQAPDPSKSYASLAKNPIHVEYDSTPQEVAVSHASVHLDTN
HSGLTAPGHSEQTVHPGPVYTQPEQHPEPQIHQIHQDHHIIHHEPQPEHE
PHLHQDHLEHHEHPSLQPYHVEKLKDHDHHVKQVVEKHIPIPYAVPQPVP
VPVHVEHYVDRPYPVETIVEHPVPYPVERVVEKIVEKHVPVEVERIVEKP
VHVEKIVEKFVDRPMAIPIHVPVAIHMPMPPGHSSLSFPHYSHPNSLTPW
THSVAHIPPKVLQNYYTRMLKKLLPQLTAKTPIPQSPKAVKLSKPVAAIK
QPVKPVRGEAPKVATFSLADMKFDLRPPPPPQGSPWLQGSRYIYNTLPAD
LATAAASTPTKMVKSYIGVVPAPTSANSDVGDSPLTSEFDEFQRWRNGHS
LKRSPDFGRNLQLEYGFKPPLVPSMEIDDKGNPLKQAEQSETQ*

MIP25881.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6280-PA 1093 CG6280-PA 1..1093 1..1093 5803 100 Plus
CG16886-PA 373 CG16886-PA 67..360 585..906 254 29.5 Plus
CG16886-PB 358 CG16886-PB 67..350 585..894 250 29.7 Plus
CG11584-PB 662 CG11584-PB 57..648 353..939 188 21.7 Plus
CG13138-PC 549 CG13138-PC 122..279 726..880 176 34.5 Plus