Clone MIP26577 Report

Search the DGRC for MIP26577

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:265
Well:77
Vector:pOT2
Associated Gene/TranscriptCG4004-RC
Protein status:MIP26577.pep: gold
Sequenced Size:1276

Clone Sequence Records

MIP26577.complete Sequence

1276 bp assembled on 2010-09-27

GenBank Submission: BT125670.1

> MIP26577.complete
TTCAGTCGTTGCGAATGTAGCAGAATGTCGGACCACGCATTTATCGCCGA
GCAGATTGCAAGTGGCCTTTACTCCTTGGAGCCCAAGCTCAAGGGAAAGA
GTTTCGTCTGGAATGTTTTAAGCGGGATTATTAAGGATGATGGATCAATT
TTAAACGACTTGGTTTACTGCCGCTCATGTCGAAAAATTCCTAAAATGTG
TTGGCAATCAAACTTCAAATTTAGCCAGGCACAAATGTTGTCAATCTTTT
CGGCAACCAACTGCCCTACGGATTGTGTCTGCTCCAGACAAAAAGGAGGC
GTTGAATGCAGTTTCCAAGTGGATTGCGGAGGACTGCCGGCCGTTTTCGG
CTGCGGTGTACTTGTAGTTGCGGATGTTGACATTATGTCTGATGCCTTTC
CACACGAAGAGGATATGCTACGTCTTGATGCCGTGGGTGATGGCGATGTT
GAACCGGAACCCGAGCCTGATAACGATCCCGAATTGGATAACATGGATGA
TCATGTTGATGATTATCGTAACAATTCATCGGCTGGGAGCATTAAGAACA
ATGGCTATCAGCAGCACACCGTATCTTCGCACCAGCAGCATAACGGTGAA
TCGCAGACTTCGGATAAATCCGGACGTCGCATCCGTAACCGACGAAGACG
CAGTAGCAATGACACCGATTACGTTGAAGCGGCGAGAAAGCGTAGAAATG
TGGAGACTTCGAATAGAGATAGAGACTGGCATAGAGAGCGGGATAGGGAG
CGAGACAGAAAGCATGAAAGCGACAGCGAGTACGAGTGCGAGCTGATCGG
AAAACGGATGGCCAGCCACTTCCGGCGTATGCGTCCGGATCAGCGACTTT
TCGCCGAACGGATCATTAGCGAGGTGTTGGTCTACGGCCGAATGAATCGC
CTTTCGTTCGAGACCCAATTTAGTATGGGTCATAAATAAGTGAAACTAAA
CTAAAACTCATTTCGCATATGAAAATGCGATTGAAAACGTATGAACGACA
ATTTAATTATTTCAAATTCTATCTTTAACGATCATTTCATTTGGCATTAC
GGTTTAAAAAAAAAGCATAATATTGAACGACAAAATGCACTATGTCCGTT
ATAGCAATAATTAATATTGCATAAGAAACAAAAATGTAATTAAGTTAAGC
TGAAAACTCGACAATATTTTTAAGTTTTCGTAGTTTAAGTGGAAAAATAG
ATAGAACCGAAATGAATGATATTTTTAGCCGCCTGCAACGCTAAGCAAAA
AAAAAACCAAAAAAAAAAAAAAAAAA

MIP26577.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 12637771..12638657 372..1258 4345 99.3 Plus
chrX 22417052 chrX 12637259..12637623 1..373 1645 97.3 Plus
chr2RHet 3288813 chr2RHet 220074..220335 91..353 965 92 Plus
chr2L 23010047 chr2L 20218922..20219194 353..76 870 89.2 Minus
chr2L 23010047 chr2L 20203853..20204100 101..353 775 88.9 Plus
chr2RHet 3288813 chr2RHet 404821..404890 160..91 350 100 Minus
chr2L 23010047 chr2L 20221256..20221333 78..1 270 89.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12746868..12747765 372..1269 4490 100 Plus
X 23542271 X 12746348..12746720 1..373 1865 100 Plus
2R 25286936 2R 1093327..1093588 91..353 965 92 Plus
2L 23513712 2L 20220521..20220793 353..76 870 89.2 Minus
2L 23513712 2L 20205452..20205699 101..353 775 88.9 Plus
2L 23513712 2L 20222855..20222932 78..1 270 89.7 Minus
2R 25286936 2R 1278158..1278195 128..91 190 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 12754966..12755863 372..1269 4490 100 Plus
X 23527363 X 12754446..12754818 1..373 1865 100 Plus
2R 25260384 2R 1093327..1093588 91..353 975 92 Plus
2L 23513712 2L 20205522..20205699 175..353 615 90.5 Plus
2L 23513712 2L 20220521..20220698 353..175 615 90.5 Minus
2L 23513712 2L 20220704..20220793 165..76 360 93.3 Minus
2L 23513712 2L 20222855..20222932 78..1 270 89.7 Minus
2L 23513712 2L 20205452..20205516 101..165 265 93.8 Plus
2R 25260384 2R 1278158..1278195 128..91 190 100 Minus
Blast to na_te.dros performed 2019-03-17 00:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 494..793 53..353 430 61.6 Plus

MIP26577.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:51:47 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 12637602..12637622 352..372 100 -> Plus
chrX 12637772..12638657 373..1258 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-09-27 12:43:15 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 389..960 368..939 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:41:40 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 389..960 368..939 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:17:05 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RC 1..915 25..939 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:38:49 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RC 1..915 25..939 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-09-27 12:43:14 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 480..1370 368..1258 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:41:40 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RA 480..1370 368..1258 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:17:05 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RC 32..1277 1..1246 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:38:49 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
CG4004-RC 32..1277 1..1246 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:51:47 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
X 12746348..12746719 1..372 100 -> Plus
X 12746869..12747754 373..1258 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:51:47 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
X 12746348..12746719 1..372 100 -> Plus
X 12746869..12747754 373..1258 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:51:47 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
X 12746348..12746719 1..372 100 -> Plus
X 12746869..12747754 373..1258 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:17:05 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12640381..12640752 1..372 100 -> Plus
arm_X 12640902..12641787 373..1258 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:45:07 Download gff for MIP26577.complete
Subject Subject Range Query Range Percent Splice Strand
X 12754446..12754817 1..372 100 -> Plus
X 12754967..12755852 373..1258 100   Plus

MIP26577.hyp Sequence

Translation from 0 to 938

> MIP26577.hyp
FSRCECSRMSDHAFIAEQIASGLYSLEPKLKGKSFVWNVLSGIIKDDGSI
LNDLVYCRSCRKIPKMCWQSNFKFSQAQMLSIFSATNCPTDCVCSRQKGG
VECSFQVDCGGLPAVFGCGVLVVADVDIMSDAFPHEEDMLRLDAVGDGDV
EPEPEPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSSHQQHNGE
SQTSDKSGRRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDWHRERDRE
RDRKHESDSEYECELIGKRMASHFRRMRPDQRLFAERIISEVLVYGRMNR
LSFETQFSMGHK*

MIP26577.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:27:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PC 304 CG4004-PC 1..304 9..312 1625 100 Plus
CG4004-PE 319 CG4004-PE 130..319 123..312 1003 98.9 Plus
CG4004-PD 319 CG4004-PD 130..319 123..312 1003 98.9 Plus
CG4004-PA 319 CG4004-PA 130..319 123..312 1003 98.9 Plus
CG4004-PB 339 CG4004-PB 148..339 121..312 1002 98.4 Plus

MIP26577.pep Sequence

Translation from 0 to 938

> MIP26577.pep
FSRCECSRMSDHAFIAEQIASGLYSLEPKLKGKSFVWNVLSGIIKDDGSI
LNDLVYCRSCRKIPKMCWQSNFKFSQAQMLSIFSATNCPTDCVCSRQKGG
VECSFQVDCGGLPAVFGCGVLVVADVDIMSDAFPHEEDMLRLDAVGDGDV
EPEPEPDNDPELDNMDDHVDDYRNNSSAGSIKNNGYQQHTVSSHQQHNGE
SQTSDKSGRRIRNRRRRSSNDTDYVEAARKRRNVETSNRDRDWHRERDRE
RDRKHESDSEYECELIGKRMASHFRRMRPDQRLFAERIISEVLVYGRMNR
LSFETQFSMGHK*

MIP26577.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21386-PA 511 GF21386-PA 328..510 128..310 287 46.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17737-PA 534 GG17737-PA 341..534 121..312 559 62.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12134-PA 398 GH12134-PA 338..386 259..307 213 79.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4004-PC 304 CG4004-PC 1..304 9..312 1625 100 Plus
CG4004-PE 319 CG4004-PE 130..319 123..312 1003 98.9 Plus
CG4004-PD 319 CG4004-PD 130..319 123..312 1003 98.9 Plus
CG4004-PA 319 CG4004-PA 130..319 123..312 1003 98.9 Plus
CG4004-PB 339 CG4004-PB 148..339 121..312 1002 98.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15912-PA 455 GI15912-PA 269..439 125..307 217 39.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13143-PA 543 GL13143-PA 344..532 125..307 236 35.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17842-PA 543 GA17842-PA 344..532 125..307 242 35.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11582-PA 468 GM11582-PA 291..468 125..312 719 79.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16819-PA 495 GJ16819-PA 432..479 260..307 218 83.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25603-PA 258 GK25603-PA 189..254 223..307 219 61.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17027-PA 498 GE17027-PA 290..498 125..312 478 63 Plus