Clone MIP26602 Report

Search the DGRC for MIP26602

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:266
Well:2
Vector:pOT2
Associated Gene/Transcriptfrc-RA
Protein status:MIP26602.pep: gold
Sequenced Size:4164

Clone Sequence Records

MIP26602.complete Sequence

4164 bp assembled on 2010-10-13

GenBank Submission: BT125707.1

> MIP26602.complete
GAGAATGGCTGCGATTTCGCGTCGGTAAAAATAGCAAATACTCGTTAATG
TGCTGTGGGAACGCTTCCTCCCCGGCCCCAAAGTGGCCCCGAAGAAAGTG
AGCAAATGTGCGCGCCGCAAGATAGTCGCCGCCGAACAAACGATAGTGAC
GAAAGTGATTTAATTCAACTACCAGCACTCCCGCAAATACGATGAGTATG
TCGCGCGGCGGCAACACAACTCTGGACTTGCAGCCGCTCCTGGCGGAGAG
CGATGTCGGAAACAGGGAGCTGGAGGAGAAGATGGGCGGATCGGCGGATC
GGTCATCGCTGCTCGATGGATCCGGTTCGAAGGAGCTGAGTCACCGGGAA
CGCGAGGACTCGGCGTTGTTCGTCAAGAAGATCGGGAGCGCCTTGTTCTA
TGGCTTGTCCTCCTTCATGATTACGGTGGTAAACAAGACGGTGCTTACCT
CCTACCACTTCCCCTCGTTCCTGTTCCTCAGCCTCGGGCAACTTACTGCT
AGCATTGTGGTCCTGGGCATGGGCAAGCGCCTGAAATTGGTGAACTTTCC
CCCTCTGCAGAGGAATACCTTCGCCAAGATCTTTCCGCTGCCACTGATAT
TTCTGGGAAACATGATGTTTGGACTGGGTGGCACAAAAACCTTGAGTCTG
CCCATGTTCGCAGCCCTACGACGCTTCTCTATCCTGATGACCATGCTGCT
GGAGCTCAAGATCCTGGGACTGCGACCTTCGAATGCGGTTCAGGTCAGCG
TATACGCAATGATCGGTGGAGCGCTGCTGGCCGCCTCTGATGATCTGTCC
TTCAACATGAGGGGCTACATCTATGTGATGATCACTAACGCCTTGACCGC
CTCGAATGGCGTATATGTGAAGAAAAAACTCGACACCTCGGAGATCGGAA
AGTACGGCCTAATGTACTACAACTCGCTGTTTATGTTTCTGCCTGCCCTG
GCCCTCAACTATGTTACAGGGAATCTAGATCAGGCGCTGAACTTTGAACA
ATGGAATGACTCAGTGTTTGTGGTGCAGTTCCTGCTCAGTTGCGTTATGG
GTTTCATCCTATCGTACAGCACCATCCTGTGCACGCAATTCAACTCGGCG
CTGACCACCACCATTGTGGGATGCCTGAAAAACATCTGCGTAACATATCT
GGGCATGTTCATTGGAGGCGACTACGTCTTCTCGTGGCTCAACTGTATTG
GGATCAACATCAGCGTGCTGGCTAGTCTGCTCTACACGTACGTCACTTTT
CGGCGGAAGCGGGCTCCCGATAAGCAGGACCACTTGCCCAGCACCCGCGG
CGAGAATGTCTAGCTTCATCTTAGCTCAAACTCAAGCCAAAGCCATACGA
TATGTTAAGTGTATTCCGTACTGTGTACTTCAATTGCGATCTGCGATTCG
CGACAACGTTCGTATTTGATTTTCCTACAACCACACAGCGCATCGTCTCT
GTACATATATCTAGCTATATTTCTATAAAAATGTAATTTAGCAATTATGT
AATTTTAATCACTTTGTACATTTGTCTGCATGCAACTGTTTCCTGCATCG
AAAGTGTCATAAGAAATAGAAATACACAGACTTCCACTCCTCCGCCTACG
GAATGGGTGGGCCAGATAAACAATTGTGTTCCGTCTTCTGTTCCATTTTG
GGTCATAATTGATAAGATTGCCTGCTCCGATAAGGCATACAACTCGGACG
TTGCAAATTAAGCAGACATCTTGCTCTCTCTCACGTGCTTTTCTAATTAC
TTTTTTGTGTAAAATAAGTAATGTAGTGGAACTGCGTTGTGGGATTTGCC
AATTACTTGTGCTTAATAGGTTGTTGTTTATCTATTCTGAGCAAACACGT
TGGCGCCTTGAGATTAATACAAAACAAAGTACTGCATTGCCGGACAATCC
AGCAGCGTCATCACTCAACATCACTATGTAAAAAGCTTTGGATAGGTTGC
TCGATTACTGATTACTCTATATCAAAATTTTGGGTTTTTATGTTGAATAA
AAAAAAAACAATATTATCAGCCAAGAACGTGATTGCGAGTGGTGATAGTA
TTTTTTAGAATAGTACGCCTTCCGATATTTTGTGTTATTTTCCGTTTCAT
TTGGTAATTGCCTCAAAAGGCTTTTGTTTAGATTGTAGTGCTGAAGAATC
TTTTTCTTTGTCTTAAAAGTAAATAAATTTGCGCAGCTGAAACTGTTTTG
TTTTAGCGAAATAAGTATGTATACTTTAAGATGGCTATCTATTTTCTTAG
AATTAGATTTTACTTGGTAACTGCCTAGTTCCTTATCAAAAGATTAAGAT
TTAAATATCCCACATATATGTTGCTAAACTTATCTTTTAAATGGTGACTA
CTCATTTATCCAAAGAAACAACAATGACGACATTGAATCGGGCATAAAGC
GGCAGAATGAGGTGCTAGTGCCCCGGCAGCACTTTGTTTGGGTTATTTTG
GGAGCCCGCAATATATGATGGGCGGTGGTGAAGTGAGGGATTCGGAGTGG
GGACAGGTAATGAGGAAGCCGAAACAGGTTTGCACAGACTTAGCCGTGCG
GTGAGGTAAATTGTTAGTCAGCATCAGCCCCGACCGCGTACCCACATTAT
GGACAAATTGTTTGCTCATATTCGCCGCTATTGAAAGTGGGCACGTACAT
ACGTACGTATGGCTCGAGGGACCAGCTTTAACCGAAGACAGGTAGTCAGG
GTCATGTTTGTGTGCGACGATGATGATGATGATAATAATAATGTAATGAT
GATGATGCCGACGATCGTGCTGATAAGGTCACCACCGGGTGCACCTCCCC
ATATCTCCTCTATGAATCCACAGATCATCATGATGCAACGCTGTTTGCGT
CTCCAAAAGCCGCTGGCCCTACGACGAGGCCTTCGCTTGGCCCAGGCTAA
TAGCCAAGCGGTGGCCACAGAAGCACCCGAGGCGGAACCTCTGGATGCCT
TCGAGCGTCAGTACCTCAAGGAGCGAATCGAGATATCGCCCTTCCAGCGG
CTGTTCCTGGGGGCAGGATCCTCCATTGCCGCGCTCTTGAATCCAAGACG
TCATGACATGATCGCCTGTTTGGGTGAGACGACTGGAGAGGATGCTCTAT
GGACAATTTTGGACACCATGCAAGCCAGCGAGGAGGGTCAGCGCATCATG
GCTGATAAGCCCCGCATCCACACCAGCACCATTGACTTCAAGTATCTGGA
AACTTTGCCACCGGATACCTTTGGAGCCGCTTACGTAAAGTTTCTGAAAG
ATAATGTAAGTAGTTCAAAGAATCCGGTAAGAAAAAGCGTTAGTAACCAT
AAAACGACGAAAATCTGGTTCAAAGACATTCCTAAGAGAATTTGGACAGT
GAATGTCATGGTCGAATTTGAAGTTGGTAACAATTGAAAATCTTAAAAAT
TATTGTCTCATAAACATACTTGCATATAAAAGATATATTTAGATGGAAAA
TAAAATAATAATTGCTTTTGTCCATCGCTTCAACGATTATTTTGGTAATC
AATTTTCAGCAAGTCACGCCGGACAGTCGCATGGCCGTGCGGTTTTTGGA
GGACCCGAAGTTGGCCTACTTGATGACGCGATATCGCGAATGCCACGACC
TAATCCACACGGTGCTGGACATGCCCACCAATATGCTGGGCGAGGTGGCT
GTCAAGTGGGTGGAGGCTCTGAACACGGGCCTGCCCATGTGCTACGGTGG
TGCGGTATTCGGAGCAGTTCGCCTACGTCCCAAGCAGCGGCGTGCGTACT
TGAAGCATTACTTGCCGTGGGCCCTGGAGAACGGCAAGCGGACCAAGCCC
TTGATGCCCGTCTACTGGGAGAAGCGCTGGGAGCAGAACATCCACGAGCT
GCGCTCCGAATTGGGCATTACTGTGCTGAATAAAGCTTGATAAGGCTGTT
TATTTTTAAGCCCATTTTTAAATTTTGAACTTATCGACTATTAGTATCGA
GCAGTCCTATCGCGATCGTAGAATTGTGATCTGGCAACGTCGTGTAACGT
CGAACTGATTGTAGATGTTTCCACTTACAAAGAAAATTATTATTTGATTA
TAGCAATAAATATAAAAGTTGATGCAGTTTGCCGAAATAATTTAAAGATC
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

MIP26602.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 00:57:59
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17419597..17422646 3050..1 14980 99.4 Minus
chr3L 24539361 chr3L 17418856..17419540 3734..3050 3425 100 Minus
chr3L 24539361 chr3L 17418416..17418783 4101..3734 1840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 00:57:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17430117..17433166 3050..1 15250 100 Minus
3L 28110227 3L 17429376..17430060 3734..3050 3425 100 Minus
3L 28110227 3L 17428927..17429303 4110..3734 1870 99.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17423217..17426266 3050..1 15250 100 Minus
3L 28103327 3L 17422476..17423160 3734..3050 3425 100 Minus
3L 28103327 3L 17422027..17422403 4110..3734 1870 99.7 Minus
Blast to na_te.dros performed on 2019-03-17 00:57:57 has no hits.

MIP26602.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 00:58:56 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17418416..17418783 3734..4101 100 <- Minus
chr3L 17418857..17419539 3051..3733 100 <- Minus
chr3L 17419597..17422646 1..3050 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-10-13 12:32:08 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
frc-RB 1..1122 192..1313 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:42:50 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
frc-RB 1..1122 192..1313 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:19:24 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
frc-RA 1..1122 192..1313 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:40:54 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
frc-RA 1..1122 192..1313 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-13 12:32:07 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG32174-RC 20..3279 1..3261 99 == Plus
CG32174-RC 3280..3866 3515..4101 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:42:50 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG32174-RC 20..3279 1..3261 99 == Plus
CG32174-RC 3280..3866 3515..4101 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:19:24 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
frc-RB 25..3284 1..3261 99 == Plus
frc-RB 3285..3871 3515..4101 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:40:54 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
frc-RB 25..3284 1..3261 99 == Plus
frc-RB 3285..3871 3515..4101 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:58:56 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17428936..17429303 3734..4101 100 <- Minus
3L 17429377..17430059 3051..3733 100 <- Minus
3L 17430117..17433166 1..3050 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:58:56 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17428936..17429303 3734..4101 100 <- Minus
3L 17429377..17430059 3051..3733 100 <- Minus
3L 17430117..17433166 1..3050 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 00:58:56 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17428936..17429303 3734..4101 100 <- Minus
3L 17429377..17430059 3051..3733 100 <- Minus
3L 17430117..17433166 1..3050 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:19:24 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17422036..17422403 3734..4101 100 <- Minus
arm_3L 17422477..17423159 3051..3733 100 <- Minus
arm_3L 17423217..17426266 1..3050 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:49:50 Download gff for MIP26602.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17422036..17422403 3734..4101 100 <- Minus
3L 17422477..17423159 3051..3733 100 <- Minus
3L 17423217..17426266 1..3050 100   Minus

MIP26602.pep Sequence

Translation from 191 to 1312

> MIP26602.pep
MSMSRGGNTTLDLQPLLAESDVGNRELEEKMGGSADRSSLLDGSGSKELS
HREREDSALFVKKIGSALFYGLSSFMITVVNKTVLTSYHFPSFLFLSLGQ
LTASIVVLGMGKRLKLVNFPPLQRNTFAKIFPLPLIFLGNMMFGLGGTKT
LSLPMFAALRRFSILMTMLLELKILGLRPSNAVQVSVYAMIGGALLAASD
DLSFNMRGYIYVMITNALTASNGVYVKKKLDTSEIGKYGLMYYNSLFMFL
PALALNYVTGNLDQALNFEQWNDSVFVVQFLLSCVMGFILSYSTILCTQF
NSALTTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINISVLASLLYTY
VTFRRKRAPDKQDHLPSTRGENV*

MIP26602.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24308-PA 364 GF24308-PA 1..364 1..373 1695 88.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15810-PA 370 GG15810-PA 1..370 1..373 1800 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14906-PA 389 GH14906-PA 1..389 1..373 1482 76.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
frc-PB 373 CG3874-PB 1..373 1..373 1889 100 Plus
frc-PA 373 CG3874-PA 1..373 1..373 1889 100 Plus
nac-PA 337 CG9620-PA 25..288 70..320 172 26.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:40:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12882-PA 386 GI12882-PA 16..386 11..373 1546 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15482-PA 320 GL15482-PA 1..311 1..303 1280 81 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17742-PA 382 GA17742-PA 1..382 1..373 1649 83.7 Plus
Dpse\GA21918-PA 337 GA21918-PA 15..281 60..313 149 26.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24331-PA 260 GM24331-PA 1..148 1..148 750 98 Plus
Dsec\GM24331-PA 260 GM24331-PA 147..260 260..373 585 94.7 Plus
Dsec\GM26356-PA 337 GM26356-PA 2..281 51..313 151 26.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:40:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12404-PA 373 GD12404-PA 1..373 1..373 1925 98.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13023-PA 382 GJ13023-PA 1..382 1..373 1537 81 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18051-PA 385 GK18051-PA 1..370 1..364 1521 78.8 Plus
Dwil\GK11707-PA 337 GK11707-PA 25..281 70..313 158 26 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22149-PA 371 GE22149-PA 1..371 1..373 1847 95.7 Plus
Dyak\GE24861-PA 337 GE24861-PA 25..281 70..313 151 26.7 Plus

MIP26602.hyp Sequence

Translation from 191 to 1312

> MIP26602.hyp
MSMSRGGNTTLDLQPLLAESDVGNRELEEKMGGSADRSSLLDGSGSKELS
HREREDSALFVKKIGSALFYGLSSFMITVVNKTVLTSYHFPSFLFLSLGQ
LTASIVVLGMGKRLKLVNFPPLQRNTFAKIFPLPLIFLGNMMFGLGGTKT
LSLPMFAALRRFSILMTMLLELKILGLRPSNAVQVSVYAMIGGALLAASD
DLSFNMRGYIYVMITNALTASNGVYVKKKLDTSEIGKYGLMYYNSLFMFL
PALALNYVTGNLDQALNFEQWNDSVFVVQFLLSCVMGFILSYSTILCTQF
NSALTTTIVGCLKNICVTYLGMFIGGDYVFSWLNCIGINISVLASLLYTY
VTFRRKRAPDKQDHLPSTRGENV*

MIP26602.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
frc-PB 373 CG3874-PB 1..373 1..373 1889 100 Plus
frc-PA 373 CG3874-PA 1..373 1..373 1889 100 Plus
nac-PA 337 CG9620-PA 25..288 70..320 172 26.3 Plus