Clone MIP27703 Report

Search the DGRC for MIP27703

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:277
Well:3
Vector:pOT2
Associated Gene/TranscriptZn72D-RE
Protein status:MIP27703.pep: gold
Sequenced Size:5022

Clone Sequence Records

MIP27703.complete Sequence

5022 bp assembled on 2011-02-14

GenBank Submission: BT126004.1

> MIP27703.complete
AGACGGAAGAAAAATTTTATTTAACCGATTTCAGCTATAAACAGGCTATT
ACTCGGAAAGCACATATAAATTCCCGAATAAATCCGCATTCGAAGTCCCA
TAAATATTGACAGTCAGTCGGATAGGACAGCTAATCGCACCGCGACAATG
GCCAACAACAACTACGCCGGGTTTAACTACGGCGGCACCCAGTACAATAC
GGGCCAAGTCTCGTACCCGGCGGTAACCAATGCCACCTACGCGAATGCGG
CCGCCTATCAGAATGCCGCTGTGGCCGCCGGACAGGGTGGTTATGGCGGA
GCAGCAGGAGCGGGCGCTGGCGCCACCTCTGGCCCTGGGGCGGGGGGTTA
TGGTGGCTACGGCGACTATCGAAGTGCCATGCAATACGACGCCACCAAGA
CATTCTATCAGCAGTCGCCGGCCAGCTACAACGCCTCCGGTTCGACAGCC
TCGGTCAGCAAGACGCACTACTCGGCTCCGCCAGTCAAGAATCAGGTCAA
GGGCAAGATGGACAAGTCGAACGGTGGTCCCAAGCCCCCTAGTTCGGCTC
CTCCGGCGGGCAACAATTACAGTGGCTATGATACAGCACTCTACAATGCG
GCAAGCATGTATGTGGCCCAACAGCATCAGGGCAATCCAAACCAAAAACC
AAATGGCGGCGCCAATAACTGGTATCAGCGTAAGATGGGAGCCACCATAC
CAGGAGCAACGGCCATAAGGGGTATGCGTCCGAAGGCACCTCCACGTCCC
CAGCAGCTGCACTACTGCGAAGTGTGCAAAATCTCGTGCGCCGGGCCGCA
GACTTATCGCGAGCATCTGGAGGGTCAGAAGCATAAGAAACGCGAGGCTT
CGCTGAAGATGTCCGCTAGTGCCAACAGTGCTACACAAAATCGTGGTAAC
AACTACCACTGCGAGCTGTGCGATGTAACATGCACTGGTACGGACGCATA
TGCCGCCCATGTACGCGGAGCCAAGCATCAGAAGGTGGTCAAGTTGCACC
AGAAACTGGGCAAACCCATTCCCTCGGAGGAGCCCAAAAAGATGGGCAAG
ATCAACTTTGTGCCCGCTGCTGCTGGCGGAGCTGGTGTTGCCAAGACCGA
AGGTGGCGCGAACGAGAGCGATGCAGCTGGAGATCTCGATGATAATCTGG
ACGATTCGCTGGGCGAAAACACGGACAACATTAAGCCAGTAGGCGGCGAG
TATATTGAAGAGGTCAAGGACGAAGAGGGCAAGATTTTGAGCTTTAATTG
CAAGCTGTGCGATTGTAAGTTCAACGACCCGAATGCCAAAGAGATGCATA
TGAAGGGCCGTCGCCATCGCTTGCAGTACAAGCGAAAGGTGCAGCCAGAT
CTAGTTGTCGACTTCAAGCCCACTCCTCGCCAGCGCCGCCTGGCTGAGGC
CCGTGCCAACCGGGCCATGATGTCCTCGCATCGCGGCGGTGATGATCACG
ACGGCGGCTACTGGGAGGAGCAGCGCAACCGACAATACAACGAAGAGTAT
GACTACAACAACTGGATGTCGCGCAGTTTCGGAGGTGCCCAGCGCTTTGG
GCGCATGGGCAATGGACCGCCGCCGCACTTTGGCATGATGCCCGGCGGAA
ATGTTCGTCGTCCGGAAAGCACCGATGATCGCCACGCCATTGCCCGTCAC
GCCGAGATCTATCCGAAGGAGGAGGAGCTGCAGACCATCCAGCGCATCGT
CTCGCACACCGAGAGGGCCCTAAAATTGGTCTCCGATGCCCTGGCCGAGC
AGCCCAGCGATGCCGGAGCGGCCAATAAGAAGGACAAGGCTGAAAAGCCG
TCGGAGAAAGACGGACGCGACAATCAGATCTTCTCGTTCCAAAAAGACGC
CGACAATGGTGGCAATGTCGTGCGCATCCTGAAGGGAGTGATGCGAGTGG
GCTACCTGGCCAAGGGGCTGCTGCTCCACGGCGACAACGCCGTCGAGCTG
GTCGTCCTTTGCGCGGAGAAGCCGACTTCGGGTCTTTTGCAGCGTGTGGC
CAATGTGCTGCCCGACAAACTCAAGGAGGTGGCAGGTAAGTGAGGAGATG
TGGCAGCTGCCATCGTAGAAATTGCATACCACTATTCTTGAATGACATTT
TGGTTGTCCTAATGAGAGGAACAGAATAGAACTTTTTCCAGAGAAATGGC
TTGAGTGATAAATGCGGCTGAAAAGCATCACTGAATCATGATCAAAACAA
AAAGTACATTAACACGTTCTTAGCTTGGCCAATTTCACACTGACCTGCGC
AGGTGAATTTGGCCAAATTGGAAGCGGCTCAAACTAATCAACTAAAACTA
ATGAACGAAAATAAATCGATTTTCGGAGCGCTAAATATGCAAGATGAACG
AACGCAACTCACGATACGTTCGCATTCGCTATTCATTACGTACGTTCACG
TTCGACGGGCAATTTGTGTGGAAAAAGTCAGCAAAATAAATCAAATTTAA
CTATTTAAAATTATTGTACATAGAAACTAGGACAACTAGAGTTGAGCCCT
GTTGTTGCGGTGGATATAGATTGCCACGCCCGCCAAACCGCGCCCAACGC
CCCAGCCAACATAGCAACTAATTGCGAATAAAAACGTATTTGCCGTTTTC
AGCTTCTCTCTCTGCAGGATAAGTTTCGAGCCTCGAGCCTTGAGCCTTAG
CCTAGAAGCTCTGTGAGCCTAGAGTCTTGAGTGTGTCGTTCAGTTAGCCA
TCTGTAGCGGTAGCTCAGCCCTCCCAGGTTGCTCCTCTTCCCGCACGACT
GCCGCTGCACTGCTCCGCTCCACTCCAATCAAATCACCAACAGCGGATCG
TCACGGTAACAAGCGCGGACTCGGTGCCACAAGTCCAGCCTCCTGCAGTC
TGATGTGGTGTGGTGTCCTTGATGAAACAGTCAAAACCAAACTCTTTAAC
CAACTGAAATTCGAACCAAAGGAATATATTTATACAAAGTTTGCGCGCCC
TCGTTTCGATTCCGGATGAAACTTTGTGTAAATAAAGTCCTTTGATGGCC
TGGCCAAGAAGTTGAACAACACAACAACACGCCAAGAAGCAATGCGATTG
ATCCACACACGAGACGCAATTGCCATATGCAAATGCGAGTGCTTGGGCCA
AAATTGCAGCGCCGATGTGCGTGCTGCCTGCCTCATCTTTCACTCGATAC
CAAGCAAATATATCTATACTCAGTAATCTCGTATACATATATATATGTCC
AAGCGGCCGAATTGTGTGTATCAAGCTTGATTGTCCAATATAGAAAATCT
ATATACATATATTTAAAAATGCAAACAAAAATTGCGACCGAAATTTGCGT
TGCGCACCGCGAATGGAGAGTACTGAAGACGAGAGACGTCTGGTCGATCA
ACGTTTCCCGCAGCCATAAATTTCGTTCAATATTTTAATGCAAACTAACC
AACAAAAGAAATCAAGTTATTTCAAGTCGAAATTCAGTAAAATACAGTGA
AGTGCGCGCTCTAAGTGGAATTGCAACGGGTGGATGACGCCGAGTCCGAG
TCTCGAGCTTGCAATTCCGTTTACGAGTCCCCAAACGGAGATACCGATCC
CAGCACGCAAGTCGAACGAATCTCCTGTTTGCTGGGAGCCGAGCGAATAC
GAGGATCGTGGGAAGAAACAAACATTATTCGTGCTTTTCATACCGTGCAT
CAAGTCCCCATTTGAACAATATCAATATATATCTATATTCAATTGTTGCT
AATCACTATATTACGATGTATACATACGTGTATTTTGCGGGCCCACACTG
GAATTTTGTTTCACCCACAATGTTTGTCTCTTTTTCCAAGTCGAATCTAG
TATTTCGATGTATTGAGCTTCCTGCGAAAACGTCTTTGTCACATTTTCTC
CATTGCTCTCTTGATTTCAGGCGACACTCAGGTCAATTACCGCGTGGAGG
TCAACGCCGAGGAAGCCGCCCTAATTGTGCTGGATGAGTCTGTCTCCGTT
AAGATTACCCTCACCTCGCCTTTGCTGCGCGATGCCAATCCCGGGGAAGC
TGCCACCACTGATGAAGGTGAGGGCGATTCCGAATTCCTGCCTCGTGAGC
CCTGCCTACGTGCTTTGGCTGATTTGCGTCACGCCAAATGGTTCCAGGCT
CGAGCGACAGGCCTCCAGTCGTGCGTCATGGTCATACGCATCCTCAGGGA
TCTGTGCCAGCGCGTCTCTTCCTGGCAATCGCTGCCCCAATGGTCTTTGG
AGCTCCTCGTAGAGAAGGTCATCTCGTCGGCTGGCTTTCCCATTTCGCCC
GGTGACTGCATGCGTCGCATCATGGAGGCCTTATCGTCAGGCTTTCTAAT
CAACGGACCGGGCCTGCTGGATCCTTGCGAGAAGGACCCCACAGACGCTC
TACTCGAGTTGACCAAACAGGAGCGCGAGGATCTCACTGTGTCCGCACAG
CTCTTCCTGCGCTACATTGCCTTTCGACAGATTTACAAAGTGCTTGGCAT
GGAGCCATTGCCGGCGATGAAGTTTCCAATGCGTCCATGGCGTGTCAACC
GCAAGCGACGTAGGTCATCGGGCAAGGCAGGTGGTGCACCCGGCACGGAG
ACCGAGTCCAATGACATCGATGAGACCGGCTCCGATGAGAAGGTGGCCAA
GAAGGAGGGTGTCGGAGGCACTCCTGCCAGCACCTAAGCGGCGAGAATAG
GTTATATACACGTAGTCGGCTACTAATATTACAATTTCTCTCAAGATAAA
AGCGCGACCAGGCGTCACTTAACTATAACCAACTCTAATCTATACACGAG
TATTCAAACCGATTGGGGCACAAGGAGCTAAGCATGTCCAACATGTTGCC
CAATCGGCGATTAGTGAATCCCAAATTACCCCAACTTTAACTAACAATAT
TTAGTGGATCATAAAACTTGTATTTTTCTAGCATTAGTGCAAGGCAAGGC
AATGTATTCAGTTTGAATGTGAACATTATGGCCCTCACACTCATATACAC
AAATACTAGAACGAAGCGGATTTTAATAAAACGTATTGAACAATTATAAA
AAAAAAAAAAAAAAAAAAAAAA

MIP27703.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16097362..16099899 4062..1533 12490 99.6 Minus
chr3L 24539361 chr3L 16100248..16101649 1537..136 6995 99.9 Minus
chr3L 24539361 chr3L 16096361..16097296 4997..4062 4650 99.8 Minus
chr3L 24539361 chr3L 16101766..16101869 135..32 520 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16107595..16110124 4062..1533 12650 100 Minus
3L 28110227 3L 16110480..16111881 1537..136 7010 100 Minus
3L 28110227 3L 16106592..16107529 4999..4062 4690 100 Minus
3L 28110227 3L 16111998..16112101 135..32 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16100695..16103224 4062..1533 12650 100 Minus
3L 28103327 3L 16103580..16104981 1537..136 7010 100 Minus
3L 28103327 3L 16099692..16100629 4999..4062 4690 100 Minus
3L 28103327 3L 16105098..16105201 135..32 520 100 Minus
3L 28103327 3L 16105432..16105465 34..1 170 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:37:45 has no hits.

MIP27703.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:38:40 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16096367..16097296 4062..4991 99 <- Minus
chr3L 16097363..16099897 1535..4061 99 <- Minus
chr3L 16100251..16101649 136..1534 99 <- Minus
chr3L 16101766..16101866 35..135 100 <- Minus
chr3L 16102100..16102133 1..34 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-02-14 12:08:24 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
Zn72D-RB 1..1889 148..2036 100 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:45:56 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
Zn72D-RE 1..1896 148..2043 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:04:40 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
Zn72D-RE 1..1896 148..2043 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 12:08:21 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
Zn72D-RB 24..2059 1..2036 100 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:45:56 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
Zn72D-RE 46..5042 1..4997 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:04:40 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
Zn72D-RE 46..5042 1..4997 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:38:40 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16106594..16107529 4062..4997 100 <- Minus
3L 16107596..16110122 1535..4061 100 <- Minus
3L 16110483..16111881 136..1534 100 <- Minus
3L 16111998..16112098 35..135 100 <- Minus
3L 16112332..16112365 1..34 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:38:40 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16106594..16107529 4062..4997 100 <- Minus
3L 16107596..16110122 1535..4061 100 <- Minus
3L 16110483..16111881 136..1534 100 <- Minus
3L 16111998..16112098 35..135 100 <- Minus
3L 16112332..16112365 1..34 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:38:40 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16106594..16107529 4062..4997 100 <- Minus
3L 16107596..16110122 1535..4061 100 <- Minus
3L 16110483..16111881 136..1534 100 <- Minus
3L 16111998..16112098 35..135 100 <- Minus
3L 16112332..16112365 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:45:56 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16099694..16100629 4062..4997 100 <- Minus
arm_3L 16100696..16103222 1535..4061 100 <- Minus
arm_3L 16103583..16104981 136..1534 100 <- Minus
arm_3L 16105098..16105198 35..135 100 <- Minus
arm_3L 16105432..16105465 1..34 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:57:25 Download gff for MIP27703.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16100696..16103222 1535..4061 100 <- Minus
3L 16099694..16100629 4062..4997 100 <- Minus
3L 16103583..16104981 136..1534 100 <- Minus
3L 16105098..16105198 35..135 100 <- Minus
3L 16105432..16105465 1..34 100   Minus

MIP27703.pep Sequence

Translation from 147 to 2042

> MIP27703.pep
MANNNYAGFNYGGTQYNTGQVSYPAVTNATYANAAAYQNAAVAAGQGGYG
GAAGAGAGATSGPGAGGYGGYGDYRSAMQYDATKTFYQQSPASYNASGST
ASVSKTHYSAPPVKNQVKGKMDKSNGGPKPPSSAPPAGNNYSGYDTALYN
AASMYVAQQHQGNPNQKPNGGANNWYQRKMGATIPGATAIRGMRPKAPPR
PQQLHYCEVCKISCAGPQTYREHLEGQKHKKREASLKMSASANSATQNRG
NNYHCELCDVTCTGTDAYAAHVRGAKHQKVVKLHQKLGKPIPSEEPKKMG
KINFVPAAAGGAGVAKTEGGANESDAAGDLDDNLDDSLGENTDNIKPVGG
EYIEEVKDEEGKILSFNCKLCDCKFNDPNAKEMHMKGRRHRLQYKRKVQP
DLVVDFKPTPRQRRLAEARANRAMMSSHRGGDDHDGGYWEEQRNRQYNEE
YDYNNWMSRSFGGAQRFGRMGNGPPPHFGMMPGGNVRRPESTDDRHAIAR
HAEIYPKEEELQTIQRIVSHTERALKLVSDALAEQPSDAGAANKKDKAEK
PSEKDGRDNQIFSFQKDADNGGNVVRILKGVMRVGYLAKGLLLHGDNAVE
LVVLCAEKPTSGLLQRVANVLPDKLKEVAGK*

MIP27703.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 17:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10657-PA 883 GF10657-PA 1..636 1..630 2680 89.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 17:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13496-PA 890 GG13496-PA 1..636 1..630 3305 97.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 17:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14705-PA 923 GH14705-PA 1..669 1..631 2506 78.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Zn72D-PE 631 CG5215-PE 1..631 1..631 3377 100 Plus
Zn72D-PD 884 CG5215-PD 1..630 1..630 3372 100 Plus
Zn72D-PC 884 CG5215-PC 1..630 1..630 3372 100 Plus
Zn72D-PF 884 CG5215-PF 1..630 1..630 3372 100 Plus
Zn72D-PB 884 CG5215-PB 1..630 1..630 3372 100 Plus
Zn72D-PA 635 CG5215-PA 1..629 1..629 3366 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 17:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12251-PA 911 GI12251-PA 1..654 1..631 2543 81 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25096-PA 915 GL25096-PA 1..657 1..630 2523 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18742-PA 915 GA18742-PA 1..657 1..630 2523 82.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 17:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24445-PA 884 GM24445-PA 1..630 1..630 3342 98.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:38:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12514-PA 884 GD12514-PA 1..630 1..630 3343 98.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 17:38:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11483-PA 906 GJ11483-PA 1..649 1..630 2543 81.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 17:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23905-PA 948 GK23905-PA 1..679 1..630 2613 81.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 17:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19795-PA 1057 GE19795-PA 1..636 1..630 3301 97 Plus
Dyak\GE19795-PA 1057 GE19795-PA 632..804 459..631 884 96 Plus

MIP27703.hyp Sequence

Translation from 147 to 2042

> MIP27703.hyp
MANNNYAGFNYGGTQYNTGQVSYPAVTNATYANAAAYQNAAVAAGQGGYG
GAAGAGAGATSGPGAGGYGGYGDYRSAMQYDATKTFYQQSPASYNASGST
ASVSKTHYSAPPVKNQVKGKMDKSNGGPKPPSSAPPAGNNYSGYDTALYN
AASMYVAQQHQGNPNQKPNGGANNWYQRKMGATIPGATAIRGMRPKAPPR
PQQLHYCEVCKISCAGPQTYREHLEGQKHKKREASLKMSASANSATQNRG
NNYHCELCDVTCTGTDAYAAHVRGAKHQKVVKLHQKLGKPIPSEEPKKMG
KINFVPAAAGGAGVAKTEGGANESDAAGDLDDNLDDSLGENTDNIKPVGG
EYIEEVKDEEGKILSFNCKLCDCKFNDPNAKEMHMKGRRHRLQYKRKVQP
DLVVDFKPTPRQRRLAEARANRAMMSSHRGGDDHDGGYWEEQRNRQYNEE
YDYNNWMSRSFGGAQRFGRMGNGPPPHFGMMPGGNVRRPESTDDRHAIAR
HAEIYPKEEELQTIQRIVSHTERALKLVSDALAEQPSDAGAANKKDKAEK
PSEKDGRDNQIFSFQKDADNGGNVVRILKGVMRVGYLAKGLLLHGDNAVE
LVVLCAEKPTSGLLQRVANVLPDKLKEVAGK*

MIP27703.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
Zn72D-PE 631 CG5215-PE 1..631 1..631 3377 100 Plus
Zn72D-PD 884 CG5215-PD 1..630 1..630 3372 100 Plus
Zn72D-PC 884 CG5215-PC 1..630 1..630 3372 100 Plus
Zn72D-PF 884 CG5215-PF 1..630 1..630 3372 100 Plus
Zn72D-PB 884 CG5215-PB 1..630 1..630 3372 100 Plus