Clone MIP27969 Report

Search the DGRC for MIP27969

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:279
Well:69
Vector:pOT2
Associated Gene/TranscriptDeaf1-RC
Protein status:MIP27969.pep: gold
Sequenced Size:2060

Clone Sequence Records

MIP27969.complete Sequence

2060 bp assembled on 2010-12-13

GenBank Submission: BT125910.1

> MIP27969.complete
TTCCTGTGCAAATCGCATTGAATTAAATCGCAAACGCCATCAATTGGCCG
CTGGACACTCACCCACATACATGTGACGAACGTGGGAATATGTGCGCTAT
GGTAATGCAGTTGGACACCAAGGTTCGCATGGTCACATCCTCCTCCAACG
ACAACAGTGGTAGCGGCGGCGCCAGTGGCGGTACAAGCGGAGCGGGCGGA
GGAAACGGCGGTGGCGGTGTGGTTTCGGTGCCCGTATCCCTGCCCATCGG
TTCGATGATAACCGGCACTACCTTCAATGTGATCACGCCCGACCAGCTGC
CCCCTCACTTCAAGCCGATGCTGTGCGTCGACAACAATGGCTACCTGTCC
GGCAGCACGGTCAGCATGGGCAACGACCTCAAGACGATCGTCATCCAGCA
ACAGCAGACGCAACCAGGCGGCGGCGGTGGCGGCGCCAATAATGCGGGCA
CCAATACGACCGCCACAAATACGATTGGACTGAATCACGATGGCTCCGGG
AGCAACAATAGCCACGACAGCCTGGCCACCTTGGAGCACGCCGCGGGCGG
AGCGAGTGGCGTCGGCGGTGGCGGCGGCGGAACGGGTGGTGGCTCCTCGG
GATGGTCGGAGAACCCGTCAACCCAGCACAATGAGGTCTTCCAGATCCGC
TGCAAAACCACCTGCGCCGAGTTATACCGCAGCAAGCTGGGCTCCGGCGG
CCGTGGACGCTGTGTGAAGTACAAGGACAAGTGGCATACGCCCAGTGAGT
TTGAGCATGTGTGTGGCCGGGGCTCCAGCAAGGATTGGAAGCGTTCGATC
AAGTACGGCGGCAAATCGCTGCAGTCCCTCATCGATGAGGGTACGCTCAC
GCCGCACGCGACCAACTGCAGCTGCACCGTCTGCTGCGACGACGAAGCAG
GTGAGTCAGCTTCCGGCCCTGTCCGTCTCTTTACACCGTACAAGCGGCGG
AAGCGGAATCAAACTGATCTCGATATGGAGTCTGGACCCAAACGCAAGCG
TAACACCCATCATAGTAACAACAACAACAGTAACACCAATAACAACAACA
CGAGCGGGAGCGGCGCCAACAACTGTGTGGATGTAACTGCAGCTGTGGCT
GCTGCAACAGCCAGCGTGGTGGACGAGAACAACATGTTCCTGTCGGAAGA
GAACATCACGTCCAAGGATGAGCCGTGGGCAGCGCTCAACGACAGCCTGG
ACACCTCCACCGAGCTGGTCGATCAGTCGCAGATGGGCAACACGTACGAA
CGGGAAACGTTTGTGGTGAACATCAACGATGGATCCTCCATCGCCGTCCT
GGACACCAGCCAGTCGATGAAGAACATCGAGCACGTGTACTGCACCATGG
TCAAGGCCACCAATGACTTCAAACGCATGCTTAACGACATGAAGCAGTCC
TTCGAGCGTCGCATCGAGGTTCTGCAAAAGGAGCGCGATGCAGCGGTCAG
CGCGATGCGTGTCCAAGTGCACGCGGACATCGATGATCCAAATATTTCAG
GCTCCCTGCACGGCAACGAGATCATTTCGGCTAAGAAGTGCGCCAACTGT
AACCGCGAAGCATTGGCCGAGTGCTCACTGTGCCGAAAGACGCCGTACTG
CTCGGAGTTCTGCCAGCGGAAGGATTGGAATGCTCACCAGGTGGAGTGCA
CAAGGAATCCACAAACGACAACGCAGCAGGTCATGCTGTTGATCGACGAT
CAGTCCTAAGCAACGTAACGAAATGTACATACAAATTTTACTACTAATTA
ATACGATTATAGGAAGTCGACCCCCCCTCCCCCAAGTCGCTAAAGTCCTT
GCAGTTCGGTTCAGGTCAAACACCTGTAGTCCACTCCCACTCCCTTCCCC
CTCGACCCCTCTCTTCCCCCAAAGTTCCCATTAGAAGGCCTGCATCCTCT
TAGACGTATGTCCTACATTAATGTAATTCTTAACGTACATATAACTATAT
AAATATATATACATTTTACTATTGAACGTAGGGCAAGCCAGCAAAGAAAA
AAAAAATAACAAAAAACAAGCGAAACGAAAGTAAAATTAATTAAAAAAAA
AAAAAAAAAA

MIP27969.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19808472..19809380 1..909 4515 99.8 Plus
chr3L 24539361 chr3L 19817677..19818307 908..1538 3155 100 Plus
chr3L 24539361 chr3L 19818380..19818885 1537..2042 2485 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:19:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19819102..19820010 1..909 4545 100 Plus
3L 28110227 3L 19828315..19828945 908..1538 3155 100 Plus
3L 28110227 3L 19829018..19829537 1537..2056 2570 99.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19812202..19813110 1..909 4545 100 Plus
3L 28103327 3L 19821415..19822045 908..1538 3155 100 Plus
3L 28103327 3L 19822118..19822637 1537..2056 2570 99.6 Plus
Blast to na_te.dros performed 2019-03-17 01:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 7729..7828 1901..1805 115 59 Minus

MIP27969.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:20:21 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19808472..19808619 1..148 100 == Plus
chr3L 19808691..19809380 220..909 99 -> Plus
chr3L 19817679..19818307 910..1538 94 -> Plus
chr3L 19818382..19818833 1539..1990 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2010-12-14 18:27:11 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RA 130..1731 108..1709 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:35:29 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RC 1..1620 90..1709 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:54:51 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RC 1..1620 90..1709 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2010-12-14 18:27:10 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RA 479..2413 108..2042 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:35:29 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RC 1..2042 1..2042 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:54:51 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
Deaf1-RC 1..2042 1..2042 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:20:21 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19819102..19820010 1..909 100 -> Plus
3L 19828317..19828945 910..1538 100 -> Plus
3L 19829020..19829523 1539..2042 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:20:21 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19819102..19820010 1..909 100 -> Plus
3L 19828317..19828945 910..1538 100 -> Plus
3L 19829020..19829523 1539..2042 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:20:21 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19819102..19820010 1..909 100 -> Plus
3L 19828317..19828945 910..1538 100 -> Plus
3L 19829020..19829523 1539..2042 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:35:29 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19812202..19813110 1..909 100 -> Plus
arm_3L 19821417..19822045 910..1538 100 -> Plus
arm_3L 19822120..19822623 1539..2042 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:52:51 Download gff for MIP27969.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19812202..19813110 1..909 100 -> Plus
3L 19821417..19822045 910..1538 100 -> Plus
3L 19822120..19822623 1539..2042 100   Plus

MIP27969.pep Sequence

Translation from 89 to 1708

> MIP27969.pep
MCAMVMQLDTKVRMVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVS
LPIGSMITGTTFNVITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTI
VIQQQQTQPGGGGGGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEH
AAGGASGVGGGGGGTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKL
GSGGRGRCVKYKDKWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDE
GTLTPHATNCSCTVCCDDEAGESASGPVRLFTPYKRRKRNQTDLDMESGP
KRKRNTHHSNNNNSNTNNNNTSGSGANNCVDVTAAVAAATASVVDENNMF
LSEENITSKDEPWAALNDSLDTSTELVDQSQMGNTYERETFVVNINDGSS
IAVLDTSQSMKNIEHVYCTMVKATNDFKRMLNDMKQSFERRIEVLQKERD
AAVSAMRVQVHADIDDPNISGSLHGNEIISAKKCANCNREALAECSLCRK
TPYCSEFCQRKDWNAHQVECTRNPQTTTQQVMLLIDDQS*

MIP27969.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23595-PA 583 GF23595-PA 45..583 7..539 2069 86.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:44:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG16060-PA 572 GG16060-PA 44..572 7..539 2796 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14660-PA 561 GH14660-PA 44..561 7..539 1951 80 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Deaf1-PC 539 CG8567-PC 1..539 1..539 2868 100 Plus
Deaf1-PE 536 CG8567-PE 1..536 1..539 2839 99.4 Plus
Deaf1-PD 576 CG8567-PD 44..576 7..539 2836 100 Plus
Deaf1-PA 576 CG8567-PA 44..576 7..539 2836 100 Plus
Deaf1-PB 573 CG8567-PB 44..573 7..539 2807 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11644-PA 565 GI11644-PA 44..565 7..539 1940 80.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15737-PA 250 GL15737-PA 1..250 296..539 1035 86.1 Plus
Dper\GL15736-PA 243 GL15736-PA 49..231 7..206 533 75 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:44:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21169-PA 567 GA21169-PA 49..567 7..539 2008 81.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19656-PA 567 GM19656-PA 76..567 45..539 2645 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14830-PA 573 GD14830-PA 44..573 7..539 2829 99.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11325-PA 574 GJ11325-PA 44..574 7..539 1987 81.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:44:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16969-PA 626 GK16969-PA 60..626 8..539 2027 77.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:44:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19626-PA 569 GE19626-PA 44..569 7..539 2762 97.9 Plus
Dyak\GE23216-PA 327 GE23216-PA 9..326 85..406 1647 97.8 Plus

MIP27969.hyp Sequence

Translation from 89 to 1708

> MIP27969.hyp
MCAMVMQLDTKVRMVTSSSNDNSGSGGASGGTSGAGGGNGGGGVVSVPVS
LPIGSMITGTTFNVITPDQLPPHFKPMLCVDNNGYLSGSTVSMGNDLKTI
VIQQQQTQPGGGGGGANNAGTNTTATNTIGLNHDGSGSNNSHDSLATLEH
AAGGASGVGGGGGGTGGGSSGWSENPSTQHNEVFQIRCKTTCAELYRSKL
GSGGRGRCVKYKDKWHTPSEFEHVCGRGSSKDWKRSIKYGGKSLQSLIDE
GTLTPHATNCSCTVCCDDEAGESASGPVRLFTPYKRRKRNQTDLDMESGP
KRKRNTHHSNNNNSNTNNNNTSGSGANNCVDVTAAVAAATASVVDENNMF
LSEENITSKDEPWAALNDSLDTSTELVDQSQMGNTYERETFVVNINDGSS
IAVLDTSQSMKNIEHVYCTMVKATNDFKRMLNDMKQSFERRIEVLQKERD
AAVSAMRVQVHADIDDPNISGSLHGNEIISAKKCANCNREALAECSLCRK
TPYCSEFCQRKDWNAHQVECTRNPQTTTQQVMLLIDDQS*

MIP27969.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
Deaf1-PC 539 CG8567-PC 1..539 1..539 2868 100 Plus
Deaf1-PE 536 CG8567-PE 1..536 1..539 2839 99.4 Plus
Deaf1-PD 576 CG8567-PD 44..576 7..539 2836 100 Plus
Deaf1-PA 576 CG8567-PA 44..576 7..539 2836 100 Plus
Deaf1-PB 573 CG8567-PB 44..573 7..539 2807 99.4 Plus