Clone MIP28030 Report

Search the DGRC for MIP28030

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:280
Well:30
Vector:pOT2
Associated Gene/TranscriptCG13707-RC
Protein status:MIP28030.pep: gold
Sequenced Size:2126

Clone Sequence Records

MIP28030.complete Sequence

2126 bp assembled on 2010-11-12

GenBank Submission: BT125774.1

> MIP28030.complete
AGCGGAATTCCGCGGCAACATGTAGAGCAGCAACAAAGGCAGCGAACGAA
AAACTACAGAAAATAAATAAAAGGAAAACAACAAACACGAATTAGTGCTA
TATGTAAAAGTCCAAAAAACCACCCGAAAATTGGACAAGTGTCGCCGGCG
GTGGGCAATCAAAAAATAAAACATTCAGGGCATCACAGATGCCGCGATGA
CGGAGCCAATTAGTGCGGCGGTGCAGCGGCGGAGGCAACTGCTCCGCAGC
GTGGAAAGTTTGCGCGGTCGTGTTCGTCAAGTGCTAAAATGTGTTATTAA
TCTGCATATTGAGTTTTTGGTAATTGATCGACGAACCTCTTCCCTTTCTT
TCCCTGTCCAAATTGTTTTTACCACACAAGCGTAATCCACTTGGCCGCAG
AGTTACACTTTTGTTGCTGGTTTAAAGTGTTGCAAACACATTGACAGATT
CTATATCTGGTATATATGTACAACTGTGCCTCTGTCTGTATAATCTCCTT
CTTATCTGGCCTTTGTGCCACTTCTGTTATCGCTCCATCACTTTCGAAAT
ATTATCTGTGCTTTCACAAACAATTCTGTTCATTTCGGCTTTCATTCTAA
AAATAGCTCTTTTATTTGGATACAAAAATTAAATTGTAATGCATTAAGTA
AGCTAGTAGCAGTAAAATTATCTTACCATTTTTACTAAATGCCGTCTTCA
ACTAGTCGTATACGTAATCTTCATAAAAGTAACGTCACATTTTTGCATGC
TTTTCTTAATGAAAGCTTGTCAACAAACTCTTAGCATTTAGCTTAACAAT
GGTCAACCGACTATATCTCTTAACCCCTTTTAGCCATTGTAATTTGTTAT
CGCTATTTCTGCTGCCATTTCACCTGCTATCACCTGTTGTTCAACAATGC
GCGACCGGCAACTCTGTTAACAGCTGCAGCAGCGATTTGGAACATGTTAA
TGCAATTATAGCCAGTTATTGGGAACGAAATGTTAGAATGTTGGACGGGT
CAGAGAGGGTTGGGGGTGCGACGTGGGGGTAGTTGGGGACTGCAGTGATT
ACTAGCACCGCTAATTAGACAATGTCGGTTCGGCCATAGGCAAACGAACG
GTTTCGCAATGCATGGCACAGTCATGGCCAGATGAATAAGTATAAAGTTA
TTTCCGCACAGGATGATTACCCGCTTCTTCGTTTGATTTTAACTTTTGAT
AACTACCTTTTTGGTGTAGAGTGTTTGGGGTAGGGTTTACTTTTCACCCC
TTCGAAACATGCACCCAACATGAGCTTAGTTGGCCGTGTTCCTAGGCTTG
GCTAATTTGGCACTAATAGAGACGCTAGTGACGAGGCCTTTGGAAAGATA
TTAGAGCTGAAATCCGAGCCAACATCGCCGAATGAATGGCGCGAATAAGG
GGGTCCGGAATGGCGACCTGGATGGGTGGATAGCTCAGCCGGCGGGAAAG
TGCTCGAATCCGATGTGGCAGCTTTGCTGGATGAGGTGCGCGAATTCAAC
GACGACCACGAGGAGATGCAGCGCCTGGACAGGATGATCGAGGCTCTGCG
GGACTATAGCGGACCCACGATATGCCACGAGTGGCCCTATCCCCTTATCT
TCAAAGGCACAATCGACGAGGCACATGTCGCACAAATACTCAATGCCAGC
GAACTGGATTTGGATACGAAGTTGGTCAAGGTGTCCGGCGGAAGGAACTG
CATCCATGTGGAATCCGATGTGGTCACAGCTCAAAGGCGCTCCAGATTGC
TGTGGTTCTCCAGAAGAAGCAGGGGGAAACGAGCTGAGCGCTTAAAGGAA
CCTAATCCTGTAGTTTGAGCTTAGCTCTGAGATTGAAACTAGTCCGAAAT
GCATATGAACAAAGTATTGTAGCCCAAGCTATAATCTGCCATTACAAAAG
AGCCGAACATATTTGAGTATAGTATAATTAAGAAAGACTGCGCTGAGATG
TCATTAACCTCCTTTAATTGCAAATTATAAATTGACATCCTTAAGCACAT
AATTTTTGAAGAAGCATGACATGTTAAAAAAAAATATTTGAAATATCATA
TTCCATCTAAGTTAAGAACCTTGTGTGATTAATAAAACGATTTCACTTGA
AAGTATAAAAAAAAAAAAAAAAAAAA

MIP28030.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4838336..4839510 1173..1 5415 97.8 Minus
chr3L 24539361 chr3L 4837202..4837858 2106..1450 3255 99.7 Minus
chr3L 24539361 chr3L 4837972..4838250 1451..1173 1290 97.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4838924..4840096 1173..1 5865 100 Minus
3L 28110227 3L 4837790..4838447 2107..1450 3290 100 Minus
3L 28110227 3L 4838561..4838839 1451..1173 1395 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:03:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4838924..4840096 1173..1 5865 100 Minus
3L 28103327 3L 4837790..4838447 2107..1450 3290 100 Minus
3L 28103327 3L 4838561..4838839 1451..1173 1395 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:07:17 has no hits.

MIP28030.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:07:56 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4837202..4837858 1450..2106 99 <- Minus
chr3L 4837974..4838249 1174..1449 97 <- Minus
chr3L 4838336..4839510 1..1173 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-11-12 11:12:43 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RA 9..378 1449..1818 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:44:10 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RA 9..378 1449..1818 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed on 2013-08-03 20:23:50 has no hits.
Sim4 to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 17:44:56 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 11:12:43 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RA 9..378 1449..1818 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:44:09 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RA 9..378 1449..1818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:23:50 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RD 1..2106 1..2106 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:44:56 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
CG13707-RD 1..2106 1..2106 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:07:56 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4837791..4838447 1450..2106 100 <- Minus
3L 4838563..4838838 1174..1449 100 <- Minus
3L 4838924..4840096 1..1173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:07:56 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4837791..4838447 1450..2106 100 <- Minus
3L 4838563..4838838 1174..1449 100 <- Minus
3L 4838924..4840096 1..1173 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:07:56 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4837791..4838447 1450..2106 100 <- Minus
3L 4838563..4838838 1174..1449 100 <- Minus
3L 4838924..4840096 1..1173 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:23:50 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4837791..4838447 1450..2106 100 <- Minus
arm_3L 4838563..4838838 1174..1449 100 <- Minus
arm_3L 4838924..4840096 1..1173 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:51:19 Download gff for MIP28030.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4837791..4838447 1450..2106 100 <- Minus
3L 4838563..4838838 1174..1449 100 <- Minus
3L 4838924..4840096 1..1173 100   Minus

MIP28030.pep Sequence

Translation from 1515 to 1817

> MIP28030.pep
MQRLDRMIEALRDYSGPTICHEWPYPLIFKGTIDEAHVAQILNASELDLD
TKLVKVSGGRNCIHVESDVVTAQRRSRLLWFSRRSRGKRAERLKEPNPVV
*

MIP28030.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 10:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20087-PA 93 GF20087-PA 1..93 1..97 286 60.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14157-PA 138 GG14157-PA 37..135 1..99 488 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15787-PA 153 GH15787-PA 73..116 1..44 229 88.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13707-PD 100 CG13707-PD 1..100 1..100 522 100 Plus
CG13707-PC 100 CG13707-PC 1..100 1..100 522 100 Plus
CG13707-PB 163 CG13707-PB 64..163 1..100 522 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 10:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12566-PA 144 GI12566-PA 46..139 1..91 256 56.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 10:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17923-PA 137 GL17923-PA 48..132 1..88 274 62.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 10:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12473-PA 137 GA12473-PA 48..132 1..88 279 62.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 10:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13943-PA 220 GM13943-PA 121..220 1..100 509 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 10:49:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13227-PA 164 GD13227-PA 64..164 1..100 498 93.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 10:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15470-PA 143 GJ15470-PA 53..133 1..83 239 55.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 10:49:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17592-PA 162 GK17592-PA 43..89 1..47 229 80.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 10:49:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20582-PA 163 GE20582-PA 64..163 1..100 489 92 Plus

MIP28030.hyp Sequence

Translation from 1515 to 1817

> MIP28030.hyp
MQRLDRMIEALRDYSGPTICHEWPYPLIFKGTIDEAHVAQILNASELDLD
TKLVKVSGGRNCIHVESDVVTAQRRSRLLWFSRRSRGKRAERLKEPNPVV
*

MIP28030.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-26 14:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13707-PD 100 CG13707-PD 1..100 1..100 522 100 Plus
CG13707-PC 100 CG13707-PC 1..100 1..100 522 100 Plus
CG13707-PB 163 CG13707-PB 64..163 1..100 522 100 Plus