Clone MIP29196 Report

Search the DGRC for MIP29196

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:291
Well:96
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptDNApol-alpha60-RA
Protein status:MIP29196.pep: gold
Sequenced Size:1703

Clone Sequence Records

MIP29196.complete Sequence

1703 bp assembled on 2012-04-30

GenBank Submission: BT133488.1

> MIP29196.complete
ATAGCAATTCCCGCGACTCACAATGGAGTTTGGTCTGAAGAAACGCGCGA
GACATGAGGTGAAGGTGGAGGTGGCCAGCCTGGAAACCAAGTACCCGCAC
AACGTCATGCTGTACCACTATCCGCCGACGGAGGACGTGCACATAGACGA
ATTCGAGGAGCTGGCTCTAGAGCGCTTGCGCCTTCTCCGCGTCCTGGATC
GCGCAAGCACCCGGAACCTGCGCGTGCTCTCAGATGAATGGAAGGAAATC
GTGAGTGCGGACCTGACCCGCGAGGGATTGCGCAGCTATTTAAGGCTCTG
CTCCACCGGCGGAAGCGCCAAGCACGAGGCGGATATCCAGACCCGCAGGC
GGGACTATCTTTCGCACTTCATCTTGCGGCTGGCCTACTGCCGCTCCGAG
GACCTTGCGCGCTGGTTCGTGGCCCGCGAAATGGAGCTCTTCCGGTACAA
ATTCGCTGCACTTAGCAGCTTCGAGGTGAAGCAGTTCCTTGAGGCCAACG
GCTTTGAGATTCACCCCCTCACCGAGGCCCAGAAGGACGAAGTCAAGGAC
GGCCTGTACGAGAGCACGGTCGGACAGAGCGTGGCGAAGATCGAGCTGTT
GGACTTCTACAAGGTGCCCTTCACCCAGGTGCTCGATCTGGTGCGCGGAC
GTCGCTGCTTTTTAAAGGCTGGCTACGCCTATGTTAACACCCACGACCTG
GTGTCCCTAGTGGGCACCAAGCAGCAGGACGAGATCGAGCAAGGCCTGCA
GGCTGCTAAGACTATGGTGGAGGATGTAGAAGCCGACGAGCGCATCTCCC
GCACACTTAAAGCTCTACATAACTCGTATACCGGTAGGGATTACACCGTT
TGTCGGGATGCAGCTGTGCCCATCGAGTCGCTCGATCAGCTCTCCAAGAC
CTCCATGCCGTTGTGTATGCGCATGTGCCACGAGCACATTCGTGCCAACC
ATCACATAAAACATAGCGGCCGAATGCAATACGGCCTGTTTCTCAAAGGA
ATTGGCGTGGCACTGGAGGATTCGCTGCGCTTCTGGCGCGAAGAGTTTAC
CAAGAAAATGGACGCGGATAAGTTTACACGCAGCTACGAGTACAATATTT
ACCATAACTACGGAAAGAAGGGTTCCATGGTCAACTACACACCCTACTCG
TGCGCCAAGATTATCAAGGATGTGGCGGGGCCGGGCGATTGCCACGGCTG
TCCGTATAAGAACATGGATCAGGGCTCGTTGAAAACCAAGCTGTCCTCCT
ATGGCCTGTCAGCCAGTGCCATCGACGAGGTGATGTTCTTTGTGTCCCGC
GGTCACTATCAAATTGGATGCGGCAAGTACTTCCAACTTACCCACAATTC
ACCCGTCGAGCCGAGCATCAATCACCCCAACAACTACTTCGAGGAGAGCC
AGATAGCGATGGGCAACCGGCAGAAGCGCGCCAATGGTTCTGCTCCGCCC
AAGGCCAGAATCCGTCCAGATATCAAGGGCCATGGGGATCGGTCCATGCT
GATGGGTGACGATGACGATGAGTTGTGGCGAATCGCGGAAACCCAGGAGC
GTATCATGCAGAGCCAAAAGGACATATCCGAGGCCTTCAATGATGATCTA
GATCTTACGCAAATCGATTACTAAACGTTGTACAACATAAATTAACTAAG
GTACATATATATTTAAGCATCGTAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

MIP29196.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 13:54:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20348916..20350588 1673..1 8335 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 13:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20359846..20361529 1684..1 8390 99.9 Minus
Blast to na_te.dros performed on 2019-03-15 13:54:52 has no hits.

MIP29196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 13:56:04 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20348916..20350588 1..1673 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2012-04-30 10:02:29 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 1..1602 23..1624 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 22:16:34 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 1..1602 23..1624 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:44:40 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 1..1602 23..1624 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-30 10:02:29 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 45..1717 1..1673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 22:16:34 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 57..1729 1..1673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:44:40 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
DNApol-alpha60-RA 57..1729 1..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:04 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20359857..20361529 1..1673 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:04 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20359857..20361529 1..1673 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 13:56:04 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20359857..20361529 1..1673 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 22:16:34 Download gff for MIP29196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20352957..20354629 1..1673 100   Minus

MIP29196.hyp Sequence

Translation from 22 to 1623

> MIP29196.hyp
MEFGLKKRARHEVKVEVASLETKYPHNVMLYHYPPTEDVHIDEFEELALE
RLRLLRVLDRASTRNLRVLSDEWKEIVSADLTREGLRSYLRLCSTGGSAK
HEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSSF
EVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLDFYKVPF
TQVLDLVRGRRCFLKAGYAYVNTHDLVSLVGTKQQDEIEQGLQAAKTMVE
DVEADERISRTLKALHNSYTGRDYTVCRDAAVPIESLDQLSKTSMPLCMR
MCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMDADK
FTRSYEYNIYHNYGKKGSMVNYTPYSCAKIIKDVAGPGDCHGCPYKNMDQ
GSLKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSIN
HPNNYFEESQIAMGNRQKRANGSAPPKARIRPDIKGHGDRSMLMGDDDDE
LWRIAETQERIMQSQKDISEAFNDDLDLTQIDY*

MIP29196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha60-PA 533 CG5553-PA 1..533 1..533 2803 100 Plus

MIP29196.pep Sequence

Translation from 22 to 1623

> MIP29196.pep
MEFGLKKRARHEVKVEVASLETKYPHNVMLYHYPPTEDVHIDEFEELALE
RLRLLRVLDRASTRNLRVLSDEWKEIVSADLTREGLRSYLRLCSTGGSAK
HEADIQTRRRDYLSHFILRLAYCRSEDLARWFVAREMELFRYKFAALSSF
EVKQFLEANGFEIHPLTEAQKDEVKDGLYESTVGQSVAKIELLDFYKVPF
TQVLDLVRGRRCFLKAGYAYVNTHDLVSLVGTKQQDEIEQGLQAAKTMVE
DVEADERISRTLKALHNSYTGRDYTVCRDAAVPIESLDQLSKTSMPLCMR
MCHEHIRANHHIKHSGRMQYGLFLKGIGVALEDSLRFWREEFTKKMDADK
FTRSYEYNIYHNYGKKGSMVNYTPYSCAKIIKDVAGPGDCHGCPYKNMDQ
GSLKTKLSSYGLSASAIDEVMFFVSRGHYQIGCGKYFQLTHNSPVEPSIN
HPNNYFEESQIAMGNRQKRANGSAPPKARIRPDIKGHGDRSMLMGDDDDE
LWRIAETQERIMQSQKDISEAFNDDLDLTQIDY*

MIP29196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-17 00:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24146-PA 532 GF24146-PA 1..532 1..533 2466 87.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-17 00:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13326-PA 532 GG13326-PA 1..532 1..533 2624 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-17 00:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16826-PA 533 GH16826-PA 1..531 1..531 2280 78.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
DNApol-alpha60-PA 533 CG5553-PA 1..533 1..533 2803 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-17 00:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11919-PA 533 GI11919-PA 1..531 1..531 2297 79.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-17 00:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25038-PA 537 GL25038-PA 1..537 1..533 2362 82.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-17 00:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18964-PA 537 GA18964-PA 1..537 1..533 2373 82.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-17 00:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22227-PA 533 GM22227-PA 1..533 1..533 2827 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-17 00:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12199-PA 533 GD12199-PA 1..533 1..533 2828 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-17 00:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13794-PA 533 GJ13794-PA 1..531 1..531 2295 79.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-17 00:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19278-PA 540 GK19278-PA 1..538 1..531 2229 76.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-17 00:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22414-PA 533 GE22414-PA 1..533 1..533 2649 93.8 Plus
Dyak\GE22752-PA 533 GE22752-PA 1..533 1..533 2649 93.8 Plus