Clone MIP29201 Report

Search the DGRC for MIP29201

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:292
Well:1
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG42688-RA
Protein status:MIP29201.pep: gold
Sequenced Size:543

Clone Sequence Records

MIP29201.complete Sequence

543 bp assembled on 2011-03-01

GenBank Submission: BT126110.1

> MIP29201.complete
AACACATCTAAAGTAACACAGGAACAGGAATCCCAATGACCAACACCTTT
TGGAAATAAATTTCTTGTCGTGACAATATTCTCGTTTCGGTTCTCGAGTG
AGTGCGTATCCGTGATCCTTGTTTACTTTGTGGATTCTCTCCATCCATTG
ACTTCCACCCAAATATCCTAATCCTATCCAAGATGTGCTGCAATCCTGGA
GGCTGCTGCAACCTGCCCTCCTGCATCCAGTGCACCAACTTTTGTTTCAA
CTGCTGGACGGGAACTGCTGCAGTGCCATGTTGCCGAGGTAGTTGCATTC
CGGGATGCAGTAGCAGCCCTGGATGCCGTTGCTGATTATCACCAAAATTA
TTACACAAGTCTACAACTAAAAACTGAAATAAACTAACAGATACCCCAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP29201.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 19180763..19181088 397..72 1615 99.7 Minus
chr2L 23010047 chr2L 19181149..19181220 72..1 360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19182188..19182516 400..72 1645 100 Minus
2L 23513712 2L 19182577..19182648 72..1 360 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19182188..19182516 400..72 1645 100 Minus
2L 23513712 2L 19182577..19182648 72..1 360 100 Minus
Blast to na_te.dros performed on 2019-03-17 01:46:29 has no hits.

MIP29201.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:47:35 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 19180763..19181087 73..397 99 <- Minus
chr2L 19181149..19181220 1..72 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-01 11:11:36 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
CG42688-RA 1..153 183..335 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:52:26 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
CG42688-RA 1..153 183..335 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:10:53 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
CG42688-RA 1..153 183..335 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-01 11:11:35 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
CG42688-RA 12..408 1..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:52:26 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
CG42688-RA 1..397 1..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:10:53 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
CG42688-RA 1..397 1..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:47:35 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19182191..19182515 73..397 100 <- Minus
2L 19182577..19182648 1..72 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:47:35 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19182191..19182515 73..397 100 <- Minus
2L 19182577..19182648 1..72 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:47:35 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19182191..19182515 73..397 100 <- Minus
2L 19182577..19182648 1..72 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:52:26 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19182191..19182515 73..397 100 <- Minus
arm_2L 19182577..19182648 1..72 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:49:31 Download gff for MIP29201.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19182191..19182515 73..397 100 <- Minus
2L 19182577..19182648 1..72 100   Minus

MIP29201.hyp Sequence

Translation from 182 to 334

> MIP29201.hyp
MCCNPGGCCNLPSCIQCTNFCFNCWTGTAAVPCCRGSCIPGCSSSPGCRC
*

MIP29201.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG42688-PB 50 CG42688-PB 1..50 1..50 323 100 Plus
CG42688-PA 50 CG42688-PA 1..50 1..50 323 100 Plus

MIP29201.pep Sequence

Translation from 182 to 334

> MIP29201.pep
MCCNPGGCCNLPSCIQCTNFCFNCWTGTAAVPCCRGSCIPGCSSSPGCRC
*

MIP29201.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:26:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG42688-PB 50 CG42688-PB 1..50 1..50 323 100 Plus
CG42688-PA 50 CG42688-PA 1..50 1..50 323 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 17:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21123-PA 119 GL21123-PA 64..105 1..42 164 76.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 17:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29078-PA 117 GA29078-PA 62..103 1..42 165 76.2 Plus
Dpse\GA28761-PA 119 GA28761-PA 64..105 1..42 164 76.2 Plus