Clone Sequence Records
MIP29231.complete Sequence
308 bp assembled on 2011-03-18
GenBank Submission: BT126143.1
> MIP29231.complete
AACTTTAAACTTTTCCAGCACGAAGATGTTGATAGCCCGACTGGCGTTTT
TAGTCTCTATTCTGGGCATTGTGGTTGGGTTCCAGAAACTGGACTCCACT
TCCAGTCCCACGACTACCAGCACTATGAGGTCTGCCCCTTATTGTCAGCC
AAGTGGAGGATATTGTCGGATGCATATGGATTGCTGTTCGCGAATGTGCA
TTCAAGTGTCAGCAGAGTGTCGCTAGAATAAATTGAATACCTTATGCTTG
GAGTTTGATATATTAAAACGATTTAATAGAGTGAAAAAAAAAAAAAAAAA
AAAAAAAA
MIP29231.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:31:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 17560449..17560611 | 163..1 | 815 | 100 | Minus |
chr3R | 27901430 | chr3R | 17560275..17560398 | 283..160 | 605 | 99.2 | Minus |
chr3R | 27901430 | chr3R | 3875405..3875516 | 160..283 | 330 | 86.3 | Plus |
chr3R | 27901430 | chr3R | 3875279..3875353 | 89..163 | 300 | 93.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21736687..21736849 | 163..1 | 815 | 100 | Minus |
3R | 32079331 | 3R | 21736513..21736636 | 283..160 | 605 | 99.2 | Minus |
3R | 32079331 | 3R | 8049209..8049283 | 89..163 | 315 | 94.7 | Plus |
3R | 32079331 | 3R | 8049345..8049456 | 160..283 | 315 | 85.5 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 21477518..21477680 | 163..1 | 815 | 100 | Minus |
3R | 31820162 | 3R | 21477344..21477467 | 283..160 | 605 | 99.1 | Minus |
3R | 31820162 | 3R | 7790040..7790114 | 89..163 | 315 | 94.6 | Plus |
3R | 31820162 | 3R | 7790176..7790249 | 160..233 | 310 | 94.5 | Plus |
3R | 31820162 | 3R | 7790248..7790287 | 244..283 | 170 | 95 | Plus |
Blast to na_te.dros performed on 2019-03-16 22:31:12 has no hits.
MIP29231.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:32:08 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 17560275..17560394 | 164..283 | 100 | <- | Minus |
chr3R | 17560449..17560611 | 1..163 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-18 09:53:56 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42869-RA | 1..102 | 125..226 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:56:38 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42869-RB | 1..201 | 26..226 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:28:53 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42869-RB | 1..201 | 26..226 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 09:53:55 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42869-RA | 1..249 | 35..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:56:38 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42869-RB | 1..283 | 1..283 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:53 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42869-RB | 1..283 | 1..283 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:08 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21736513..21736632 | 164..283 | 100 | <- | Minus |
3R | 21736687..21736849 | 1..163 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:08 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21736513..21736632 | 164..283 | 100 | <- | Minus |
3R | 21736687..21736849 | 1..163 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:32:08 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21736513..21736632 | 164..283 | 100 | <- | Minus |
3R | 21736687..21736849 | 1..163 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:56:38 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17562409..17562571 | 1..163 | 100 | | Minus |
arm_3R | 17562235..17562354 | 164..283 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:01:30 Download gff for
MIP29231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21477344..21477463 | 164..283 | 100 | <- | Minus |
3R | 21477518..21477680 | 1..163 | 100 | | Minus |
MIP29231.hyp Sequence
Translation from 0 to 230
> MIP29231.hyp
NFKLFQHEDVDSPTGVFSLYSGHCGWVPETGLHFQSHDYQHYEVCPLLSA
KWRILSDAYGLLFANVHSSVSRVSLE*
Sequence MIP29231.hyp has no blast hits.
MIP29231.pep Sequence
Translation from 1 to 225
> MIP29231.pep
TLNFSSTKMLIARLAFLVSILGIVVGFQKLDSTSSPTTTSTMRSAPYCQP
SGGYCRMHMDCCSRMCIQVSAECR*
MIP29231.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42869-PB | 66 | CG42869-PB | 1..66 | 9..74 | 349 | 100 | Plus |
CG43618-PA | 56 | CG43618-PA | 2..56 | 17..74 | 253 | 81 | Plus |