Clone MIP29271 Report

Search the DGRC for MIP29271

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:292
Well:71
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG30381-RB
Protein status:MIP29271.pep: gold
Sequenced Size:1268

Clone Sequence Records

MIP29271.complete Sequence

1268 bp assembled on 2011-03-28

GenBank Submission: BT126280.1

> MIP29271.complete
TCCAAATGTTTTTATTTACAATTTACTTCAGTCGCTTTTAATATAAGTTA
GTTTGCAAAAAATGCATTCCAAGGGAAATAACCAGTGCTTACTGTTCACC
TTGGTTTTGGGCTTACTGGGAGGCGCGGGACATTGTTATGTAGTCGAACC
ACCTATCGTTCACGTGGAAATGGAAAAAGCCGGCATGCACAGGACCCTTA
ATTACCGTCTGCGGTTCGATATACCCTTGGTGGGCAAGGACTGCGAGTAT
GCGCTGGTCCAGGATTTGCCCGCATCCGTTTACATAAGCACAGACGAACT
GGATGACCTGCAGCGTTTGAAGAGGTTAAATGCCATCTATCCTAAGTTCG
TCAACATTGAAGTAGCCACGGAACGGGCGCAGCCCTTCTCCGTTTTACTG
CGCGGTACACCAAAGATTACGGAATCGCTGGCTCTGCCCGTGCATTTTCG
CTACCATGCCCCCAGTGATAAGCGTTTGGCGGCAACGGTGGCCATACCCC
TACCCGAGCTCTATCTCAACTGCCCGATGGCTGATAGTGCGCTCATCGAA
AACGAGTTGGTTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGA
AAGCCGTTTCGACGAGAACCATATCAAGGATGGCCAACCCACGACCATGG
CTAATCTGGAGCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTA
AAGATGCCGCTGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGG
TCCAGTTCTGTGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGA
CCATCATCCACTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAAC
GAGCAGCGACTTCTGCAGCAAAAAGTCAAGTAACAGGCGACGAAGTCGGT
GCGATTCAAAGTCAGCGATGGCTAATTGAACAATACATTTTAGCGATGAC
ACAGGATTGTAAATATGTATTAATATGCTGTTTGCATAGAAAACTCACTT
ATTGATATAGTTAAAGCGACTTCAGCAGCTTCGAAACGTGCCACACATAG
TAAAGTCATATTTTGGGCTTATCACACAACTAAGTCATATTAAGCTTCCC
TAAGCATAAGCGTAAACATAAACCATTATCTTTAGTTATAGCTAGGCATA
TCCAAATAACGCTGTCACAGCGGCAAGCTTAAATAAGAATAACTTATAAT
TACTACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA

MIP29271.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3817051..3817783 1206..474 3635 99.7 Minus
chr2R 21145070 chr2R 3818246..3818438 193..1 965 100 Minus
chr2R 21145070 chr2R 3817845..3817994 474..325 750 100 Minus
chr2R 21145070 chr2R 3818053..3818188 325..190 650 98.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:00:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929656..7930390 1208..474 3675 100 Minus
2R 25286936 2R 7930853..7931045 193..1 965 100 Minus
2R 25286936 2R 7930452..7930601 474..325 750 100 Minus
2R 25286936 2R 7930660..7930795 325..190 680 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7930855..7931589 1208..474 3675 100 Minus
2R 25260384 2R 7932052..7932244 193..1 965 100 Minus
2R 25260384 2R 7931651..7931800 474..325 750 100 Minus
2R 25260384 2R 7931859..7931994 325..190 680 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:00:48 has no hits.

MIP29271.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:01:26 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3818247..3818438 1..192 100   Minus
chr2R 3817845..3817993 326..474 100 <- Minus
chr2R 3817051..3817782 475..1206 99 <- Minus
chr2R 3818053..3818185 193..325 98 <- Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-11 16:14:51 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 1..714 170..883 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:02:58 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 1..714 170..883 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:34:50 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 1..714 170..883 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-11 16:14:51 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 1..1177 30..1206 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:02:58 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 1..1177 30..1206 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:50 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 1..1177 30..1206 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:26 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7929658..7930389 475..1206 100 <- Minus
2R 7930452..7930600 326..474 100 <- Minus
2R 7930660..7930792 193..325 100 <- Minus
2R 7930854..7931045 1..192 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:26 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7929658..7930389 475..1206 100 <- Minus
2R 7930452..7930600 326..474 100 <- Minus
2R 7930660..7930792 193..325 100 <- Minus
2R 7930854..7931045 1..192 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:01:26 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7929658..7930389 475..1206 100 <- Minus
2R 7930452..7930600 326..474 100 <- Minus
2R 7930660..7930792 193..325 100 <- Minus
2R 7930854..7931045 1..192 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:02:58 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817163..3817894 475..1206 100 <- Minus
arm_2R 3817957..3818105 326..474 100 <- Minus
arm_2R 3818165..3818297 193..325 100 <- Minus
arm_2R 3818359..3818550 1..192 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:03:29 Download gff for MIP29271.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7930857..7931588 475..1206 100 <- Minus
2R 7931651..7931799 326..474 100 <- Minus
2R 7931859..7931991 193..325 100 <- Minus
2R 7932053..7932244 1..192 100   Minus

MIP29271.pep Sequence

Translation from 61 to 882

> MIP29271.pep
MHSKGNNQCLLFTLVLGLLGGAGHCYVVEPPIVHVEMEKAGMHRTLNYRL
RFDIPLVGKDCEYALVQDLPASVYISTDELDDLQRLKRLNAIYPKFVNIE
VATERAQPFSVLLRGTPKITESLALPVHFRYHAPSDKRLAATVAIPLPEL
YLNCPMADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLE
RCNWRRVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIH
SMANTRRINQRLNEQRLLQQKVK*

MIP29271.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19764-PA 115 GF19764-PA 3..114 161..272 480 79.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10697-PA 237 GG10697-PA 1..237 37..273 1231 96.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-X-PB 237 CG30381-PB 1..237 37..273 1243 100 Plus
PIG-X-PC 243 CG30381-PC 1..243 37..273 1226 97.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19731-PA 231 GI19731-PA 1..220 33..262 578 45.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10385-PA 237 GL10385-PA 1..237 37..273 955 71.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15804-PA 237 GA15804-PA 1..237 37..273 957 71.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:44:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20745-PA 237 GM20745-PA 1..237 37..273 1218 94.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10211-PA 224 GD10211-PA 1..224 50..273 1162 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18420-PA 233 GJ18420-PA 1..227 37..270 651 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21349-PA 234 GK21349-PA 1..234 37..273 807 62.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:44:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23519-PA 237 GE23519-PA 1..237 37..273 1193 93.7 Plus

MIP29271.hyp Sequence

Translation from 61 to 882

> MIP29271.hyp
MHSKGNNQCLLFTLVLGLLGGAGHCYVVEPPIVHVEMEKAGMHRTLNYRL
RFDIPLVGKDCEYALVQDLPASVYISTDELDDLQRLKRLNAIYPKFVNIE
VATERAQPFSVLLRGTPKITESLALPVHFRYHAPSDKRLAATVAIPLPEL
YLNCPMADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLE
RCNWRRVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIH
SMANTRRINQRLNEQRLLQQKVK*

MIP29271.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PB 237 CG30381-PB 1..237 37..273 1243 100 Plus
CG30381-PC 243 CG30381-PC 1..243 37..273 1226 97.5 Plus