Clone MIP29308 Report

Search the DGRC for MIP29308

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:293
Well:8
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG42848-RA
Protein status:MIP29308.pep: wuzgold
Sequenced Size:774

Clone Sequence Records

MIP29308.complete Sequence

774 bp assembled on 2011-03-01

GenBank Submission: BT126242.1

> MIP29308.complete
TTTGGTTTTTCCCAAATCCTGTTCTTCAGTTTGCTGTATGTGTCCTGCAC
TCCCGACCATGGCAATAGTACCAATTACCAACATCCACTCTATACGAGTG
AATCCTCTCCAGGGTCTAGAATTCTTTTACGTTCCATTGCAGTATGGTGT
GCACTTGACCACGACTTTGATTTCGGCCATCGGGAACTTTTTGTATCGCC
TGTGGTCGCCGCCCTTGAGGAGAAGTTGTTGATCCCAATTTACAATTTCT
TTAGCCGATATGCTATTTGGATCTCTTTTGTAGATGCTATGTAGTTTTCT
GTAAGTTATTTCTAAACCGACCCACGGTGCCACAGATGCAGTAGAAGCCT
CAGCAAAGGAGAGGTTAAAGAAGCCAGACTTGGACACCAAATGGAATGCG
AAGCTGCGGAGGGACGCGATTCGAGCGAGGCAGATGAAGAAGATGTTAGC
CCAAGCGGATGCAGAAGTAAAGTACGAAGAGGACAAGGGTCCATGACCAG
GACCAGTCTGGACTGGAGGCGCTGCCATGGATCGGGAGGAGGTCGAGGAG
CAGCAGGGCGATGGGAATTCGAGAAGGGGCAGCATCATCAGCAACAGCAG
CATAAACAAAACGACCATCAGAGCCGCAGGAACGGAAGAACCATACACTG
GACGAAATCAAACCAAAGTAAGGAAGGATGATACTTCAAACTACTTTTAC
ATTTTGGACAATTAATAATATGCTGTGAAAAAATAAATAATATAAATAAA
AGTGTAAAAAAAAAAAAAAAAAAA

MIP29308.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 18945015..18945769 1..755 3745 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18946328..18947083 1..756 3780 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18946328..18947083 1..756 3780 100 Plus
Blast to na_te.dros performed 2019-03-16 22:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2290..2416 519..643 161 60.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2256..2405 527..671 160 61.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6870 549..643 157 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2359..2439 572..653 155 68.7 Plus
roo 9092 roo DM_ROO 9092bp 1086..1162 546..621 147 70.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6735..6804 575..643 140 68.6 Plus
roo 9092 roo DM_ROO 9092bp 1083..1176 575..666 140 63.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2490..2539 580..628 139 78 Plus
roo 9092 roo DM_ROO 9092bp 1092..1155 572..634 137 70.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2779..2858 566..644 136 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6756..6825 575..643 131 67.1 Plus
roo 9092 roo DM_ROO 9092bp 1056..1238 569..753 128 55.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2336..2401 579..645 125 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6777..6843 575..643 124 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6796 581..656 121 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6837..6913 546..621 121 63.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2808..2888 580..661 119 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6862 580..648 119 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6831..6896 581..641 119 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2427 575..633 117 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2390..2445 579..633 115 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6837 580..643 115 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6849..6898 572..621 115 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2277..2356 564..643 112 63.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1558..1601 575..617 109 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6797 567..641 109 63.7 Plus

MIP29308.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:15:49 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 18945015..18945738 1..724 99 -> Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-01 11:28:27 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
CG42848-RA 1..291 391..681 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-01 11:28:26 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
CG42848-RA 24..778 1..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:15:49 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18946328..18947082 1..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:15:49 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18946328..18947082 1..755 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:15:49 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18946328..18947082 1..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:52:34 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18946328..18947082 1..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:52:34 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18946328..18947082 1..755 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:52:34 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18946328..18947082 1..755 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:00:10 Download gff for MIP29308.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18946328..18947082 1..755 100   Plus

MIP29308.hyp Sequence

Translation from 0 to 293

> MIP29308.hyp
FGFSQILFFSLLYVSCTPDHGNSTNYQHPLYTSESSPGSRILLRSIAVWC
ALDHDFDFGHRELFVSPVVAALEEKLLIPIYNFFSRYAIWISFVDAM*
Sequence MIP29308.hyp has no blast hits.

MIP29308.pep Sequence

Translation from 390 to 680

> MIP29308.pep
MECEAAEGRDSSEADEEDVSPSGCRSKVRRGQGSMTRTSLDWRRCHGSGG
GRGAAGRWEFEKGQHHQQQQHKQNDHQSRRNGRTIHWTKSNQSKEG*
Sequence MIP29308.pep has no blast hits.