Clone MIP29309 Report

Search the DGRC for MIP29309

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:293
Well:9
Vector:pOT2|pOTB7_DraIII
Associated Gene/TranscriptCG42841-RA
Protein status:MIP29309.pep: gold
Sequenced Size:517

Clone Sequence Records

MIP29309.complete Sequence

517 bp assembled on 2011-03-01

GenBank Submission: BT126310.1

> MIP29309.complete
AATCAGTTTGAGTAGATTCAGGCGAAAACAGACGTTTACCAGCTGTCTGC
TTCACTCGTCTCCAAAATTCAAAGTTTTTAAAAATAGAAAAAAAAAAAGT
GCCACTTCCAAGGAAACCAACAAATAGGCTTGCAGTTCCATCTCGCACCC
ATAATGGACCACTCATTTCCCAGCATGCCACCAAATATTTATCCGGAGTG
GAGTGACGCACGCACCTCAAGCATTAGCAATGGAAATCTCGTAGACCCAA
AACTAGACCTGTTCTTCCTGATGAGGTCATATCAGTTTCCACTGCCGCCT
CTCTACTCCCGTAGAGAATTTCGTTGGAGCCTCGAGGGATCTCCGCTGTC
GGACGACGAGAAACGTGCTTATAACGATTCCATGATCGAGTAATGTATGA
CGCTGGTGCAGATTGGCCCGCATTGGCCAGTGAACGTCGGGATTGAACTG
GAAATATTATTTCAATAGAGCAGCAGCACCTACTACCCACAAAAAAAAAA
AAAAAAAAAAAAAAAAA

MIP29309.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:15:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 2004761..2005246 488..1 2315 98.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:15:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2005208..2005699 492..1 2445 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:06:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 2005208..2005699 492..1 2445 99.7 Minus
Blast to na_te.dros performed on 2019-03-16 22:15:33 has no hits.

MIP29309.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:16:12 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 2004759..2005246 1..490 98   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-01 15:46:45 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
CG42841-RA 1..240 154..393 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:53:16 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
CG42841-RB 1..240 154..393 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:25:45 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
CG42841-RB 1..240 154..393 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-01 15:46:44 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
CG42841-RA 1..442 49..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:53:16 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
CG42841-RB 1..442 49..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:25:45 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
CG42841-RB 1..442 49..490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:16:12 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2005210..2005699 1..490 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:16:12 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2005210..2005699 1..490 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:16:12 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2005210..2005699 1..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:53:16 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2005210..2005699 1..490 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:57:00 Download gff for MIP29309.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2005210..2005699 1..490 99   Minus

MIP29309.pep Sequence

Translation from 153 to 392

> MIP29309.pep
MDHSFPSMPPNIYPEWSDARTSSISNGNLVDPKLDLFFLMRSYQFPLPPL
YSRREFRWSLEGSPLSDDEKRAYNDSMIE*

MIP29309.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG42841-PA 79 CG42841-PA 1..79 1..79 428 100 Plus
CG42841-PB 79 CG42841-PB 1..79 1..79 428 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 17:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13417-PA 79 GD13417-PA 1..79 1..79 357 86.1 Plus

MIP29309.hyp Sequence

Translation from 153 to 392

> MIP29309.hyp
MDHSFPSMPPNIYPEWSDARTSSISNGNLVDPKLDLFFLMRSYQFPLPPL
YSRREFRWSLEGSPLSDDEKRAYNDSMIE*

MIP29309.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG42841-PA 79 CG42841-PA 1..79 1..79 428 100 Plus
CG42841-PB 79 CG42841-PB 1..79 1..79 428 100 Plus