MIP29442.complete Sequence
371 bp assembled on 2011-03-01
GenBank Submission: BT126109.1
> MIP29442.complete
CTTAGTATTGCATTTAATATTGTGATTCGGATGCTTTTGGGCATGGCCAT
CGCTTTTCCCACTCATCAGTTCGTGCCACACATACCTTATGGCATGGATG
ACTTTTACCCGTTTCTTGCCAGAAATTCCACCGATGTGCTGCCGTTGTCT
ACAAATCTAACTCAAATTGAACGACTAGGATGGGCCGATAAATGTGTGCA
GTTTAGAAATAAGTGCACATTAGCAGAGCATTGTTGCAGTCTTAGATGCC
TGAAACGTATTTATCGATGCATTACCTAAGCTGTATATCGAAGATTGTCT
CCTAAAAGTATTTTATAATAAAAATATGTTATTTAAATAAAAATCTTTTA
CTTGAAAAAAAAAAAAAAAAA
MIP29442.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-17 01:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 17560695..17560883 | 354..166 | 930 | 99.5 | Minus |
chr3R | 27901430 | chr3R | 17560948..17561112 | 165..1 | 810 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-17 01:46:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21736932..21737121 | 355..166 | 950 | 100 | Minus |
3R | 32079331 | 3R | 21737186..21737350 | 165..1 | 825 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 21477763..21477952 | 355..166 | 950 | 100 | Minus |
3R | 31820162 | 3R | 21478017..21478181 | 165..1 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-17 01:46:24 has no hits.
MIP29442.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-17 01:47:32 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 17560742..17560883 | 166..307 | 100 | <- | Minus |
chr3R | 17560948..17561112 | 1..165 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-01 11:05:54 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42870-RA | 1..186 | 94..279 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 20:52:19 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42870-RB | 7..285 | 1..279 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 18:10:46 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42870-RB | 7..285 | 1..279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-01 11:05:53 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42870-RA | 1..282 | 21..302 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 20:52:19 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42870-RB | 15..368 | 1..354 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 18:10:46 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42870-RB | 15..368 | 1..354 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:47:32 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21737186..21737350 | 1..165 | 100 | | Minus |
3R | 21736933..21737121 | 166..354 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:47:32 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21737186..21737350 | 1..165 | 100 | | Minus |
3R | 21736933..21737121 | 166..354 | 100 | <- | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-17 01:47:32 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21737186..21737350 | 1..165 | 100 | | Minus |
3R | 21736933..21737121 | 166..354 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 20:52:19 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17562908..17563072 | 1..165 | 100 | | Minus |
arm_3R | 17562655..17562843 | 166..354 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:49:24 Download gff for
MIP29442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21477764..21477952 | 166..354 | 100 | <- | Minus |
3R | 21478017..21478181 | 1..165 | 100 | | Minus |
MIP29442.hyp Sequence
Translation from 0 to 278
> MIP29442.hyp
LSIAFNIVIRMLLGMAIAFPTHQFVPHIPYGMDDFYPFLARNSTDVLPLS
TNLTQIERLGWADKCVQFRNKCTLAEHCCSLRCLKRIYRCIT*
MIP29442.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42870-PB | 94 | CG42870-PB | 3..94 | 1..92 | 499 | 100 | Plus |
MIP29442.pep Sequence
Translation from 0 to 278
> MIP29442.pep
LSIAFNIVIRMLLGMAIAFPTHQFVPHIPYGMDDFYPFLARNSTDVLPLS
TNLTQIERLGWADKCVQFRNKCTLAEHCCSLRCLKRIYRCIT*
MIP29442.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42870-PB | 94 | CG42870-PB | 3..94 | 1..92 | 499 | 100 | Plus |