Clone MIP29913 Report

Search the DGRC for MIP29913

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:299
Well:13
Vector:pOT2
Associated Gene/TranscriptCG42815-RA
Protein status:MIP29913.pep: gold
Sequenced Size:426

Clone Sequence Records

MIP29913.complete Sequence

426 bp assembled on 2011-03-30

GenBank Submission: BT126237.1

> MIP29913.complete
TTCCACACGACAAACGTCTTTCAAGATGAAGCTACTTCTTCCTTTGACTT
TGGCAGTGATTGCCATTTGCTGCATGTCCTTTATTGAGTGCGCCTCGTCG
GGCGACACAGCAACCAAAACTGGGACAGGCACTGGAACTGGAACTGGTAC
CGGCACCGGCACCGGCACCGGAACAGCCACCACATCGACAACTGTTGCTC
CAACAACCACCTCTACCACGACCGCAGAAGCGACCGTGCACCACAGAAGG
ATACATCGGCGCAGGCGTCGCAACCTAAGGAGACTCCGACACAGGCGCGC
AGAGGCCGAGCGAAGACGCCGATTGGGCTAGTCGGTAAAAAGTTTACCTT
ACATTTTTCAAAGCCTGCAGACATGTAAATCCACGCTTTTCCGAAATAAA
GTTTCTTTAAAAAAAAAAAAAAAAAA

MIP29913.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17780678..17781085 408..1 2040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17791072..17791486 415..1 2075 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17784172..17784586 415..1 2075 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:53:33 has no hits.

MIP29913.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:54:14 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17780678..17781085 1..408 100   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:19 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..306 26..331 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:10 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..306 26..331 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:32:26 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..306 26..331 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:19 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..306 26..331 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:10 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..408 1..408 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:26 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
CG42815-RA 1..408 1..408 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:14 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17791079..17791486 1..408 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:14 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17791079..17791486 1..408 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:14 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17791079..17791486 1..408 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:10 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17784179..17784586 1..408 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:03:53 Download gff for MIP29913.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17784179..17784586 1..408 100   Minus

MIP29913.hyp Sequence

Translation from 0 to 330

> MIP29913.hyp
STRQTSFKMKLLLPLTLAVIAICCMSFIECASSGDTATKTGTGTGTGTGT
GTGTGTGTATTSTTVAPTTTSTTTAEATVHHRRIHRRRRRNLRRLRHRRA
EAERRRRLG*

MIP29913.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG42815-PA 101 CG32186-PA 1..101 9..109 517 100 Plus
CG32073-PB 109 CG32073-PB 1..108 9..107 214 46.8 Plus
CG32073-PA 109 CG32073-PA 1..108 9..107 214 46.8 Plus
CG32453-PB 120 CG32453-PB 1..104 9..108 138 35.2 Plus
CG32453-PA 120 CG32453-PA 1..104 9..108 138 35.2 Plus

MIP29913.pep Sequence

Translation from 1 to 330

> MIP29913.pep
STRQTSFKMKLLLPLTLAVIAICCMSFIECASSGDTATKTGTGTGTGTGT
GTGTGTGTATTSTTVAPTTTSTTTAEATVHHRRIHRRRRRNLRRLRHRRA
EAERRRRLG*

MIP29913.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:20:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG42815-PA 101 CG32186-PA 1..101 9..109 517 100 Plus
CG32073-PB 109 CG32073-PB 1..108 9..107 214 46.8 Plus
CG32073-PA 109 CG32073-PA 1..108 9..107 214 46.8 Plus
per-PB 1218 CG2647-PB 693..740 31..78 145 62.5 Plus
per-PA 1218 CG2647-PA 693..740 31..78 145 62.5 Plus
CG14454-PB 120 CG14454-PB 1..104 9..108 138 35.2 Plus
CG14454-PA 120 CG14454-PA 1..104 9..108 138 35.2 Plus
CG32453-PB 120 CG32453-PB 1..104 9..108 138 35.2 Plus
CG32453-PA 120 CG32453-PA 1..104 9..108 138 35.2 Plus
CG32071-PA 150 CG32071-PA 17..115 9..107 136 33.3 Plus