Clone MIP29949 Report

Search the DGRC for MIP29949

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:299
Well:49
Vector:pOT2
Associated Gene/TranscriptCG43668-RA
Protein status:MIP29949.pep: gold
Sequenced Size:687

Clone Sequence Records

MIP29949.complete Sequence

687 bp assembled on 2011-03-30

GenBank Submission: BT126195.1

> MIP29949.complete
AACTCTCGAACTAAGAAGGCCTAACTAATAACTCCGTCATGTTAGCCACT
TTGATTGGTCTTGCTCTGCTGCTCCAAGCTAACACGATTGCAGGACAGGA
TTACCAAGTTTTTGGATCACCTGGCGTACAAGTAATCTACCCGTCCTCAT
CGCAAGTTCAGGTCATTGGCGGAAGACATTTCTTACGCAACGGATTGCGA
AGGAATCTCACGATCAATGCGAACGCAACTAGTCAAAATTTTCAACTTAT
CAGTAGCTTGAGCAACGGAAATTCAGGCAACACTCCTCTTCGGAATTTCT
TAAGGTCCTTGTTTGGCCGCCAGCCAAATATCCAGTATGTAAACCTGAAT
TCCAGAGCCTTTAACGACGTCTCCCAGGAGCCTCTATACTGGAATCCATA
TCGGTCCTTTGCGAGTCCAGTGGTTTTGCCCCGCGCACGAGTTAAGACTG
TAAGACAAGGTGTTCCACGACGGATTTTGGTACGGAATCTGATGTCCACC
AAATCCCAGACCACCAATGTGCAATCCTTTAGGATTCCGATTCTTGAGAA
CGAATGGCAGTATGACCCGACATATGTATAATATTGAGTGAACAATTGGA
TCAGCCTCCCCTGACTTTTCCGGACTAAAATATAAATAAAATGAAATTTT
TGAGATGATGAAAAAAAAAAAAAAAAAAAAAAAAAAA

MIP29949.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:53:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16678274..16678833 560..1 2755 99.5 Minus
chr2R 21145070 chr2R 16678131..16678220 660..559 280 87.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20791617..20792176 560..1 2800 100 Minus
2R 25286936 2R 20791460..20791563 662..559 520 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20792816..20793375 560..1 2800 100 Minus
2R 25260384 2R 20792659..20792762 662..559 520 100 Minus
Blast to na_te.dros performed on 2019-03-16 22:53:19 has no hits.

MIP29949.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:54:07 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16678274..16678833 1..560 99   Minus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:17 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15226-RA 1..524 39..563 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:01 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43668-RA 1..543 39..581 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:32:16 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43668-RA 1..543 39..581 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:17 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
CG15226-RA 1..524 39..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:01 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43668-RA 17..676 1..660 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:16 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
CG43668-RA 17..676 1..660 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:07 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20791462..20791561 561..660 100 <- Minus
2R 20791617..20792176 1..560 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:07 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20791462..20791561 561..660 100 <- Minus
2R 20791617..20792176 1..560 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:07 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20791462..20791561 561..660 100 <- Minus
2R 20791617..20792176 1..560 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:01 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16678967..16679066 561..660 100 <- Minus
arm_2R 16679122..16679681 1..560 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:03:49 Download gff for MIP29949.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20792816..20793375 1..560 100   Minus
2R 20792661..20792760 561..660 100 <- Minus

MIP29949.hyp Sequence

Translation from 38 to 580

> MIP29949.hyp
MLATLIGLALLLQANTIAGQDYQVFGSPGVQVIYPSSSQVQVIGGRHFLR
NGLRRNLTINANATSQNFQLISSLSNGNSGNTPLRNFLRSLFGRQPNIQY
VNLNSRAFNDVSQEPLYWNPYRSFASPVVLPRARVKTVRQGVPRRILVRN
LMSTKSQTTNVQSFRIPILENEWQYDPTYV*

MIP29949.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG43668-PA 180 CG43668-PA 1..180 1..180 920 100 Plus

MIP29949.pep Sequence

Translation from 38 to 580

> MIP29949.pep
MLATLIGLALLLQANTIAGQDYQVFGSPGVQVIYPSSSQVQVIGGRHFLR
NGLRRNLTINANATSQNFQLISSLSNGNSGNTPLRNFLRSLFGRQPNIQY
VNLNSRAFNDVSQEPLYWNPYRSFASPVVLPRARVKTVRQGVPRRILVRN
LMSTKSQTTNVQSFRIPILENEWQYDPTYV*

MIP29949.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG43668-PA 180 CG43668-PA 1..180 1..180 920 100 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17424-PA 353 GL17424-PA 1..190 1..173 230 37.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15775-PA 182 GM15775-PA 1..180 1..180 879 95 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:36:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25251-PA 328 GD25251-PA 1..174 1..174 838 93.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13770-PA 230 GE13770-PA 1..173 1..172 780 86.7 Plus