Clone Sequence Records
MIP29949.complete Sequence
687 bp assembled on 2011-03-30
GenBank Submission: BT126195.1
> MIP29949.complete
AACTCTCGAACTAAGAAGGCCTAACTAATAACTCCGTCATGTTAGCCACT
TTGATTGGTCTTGCTCTGCTGCTCCAAGCTAACACGATTGCAGGACAGGA
TTACCAAGTTTTTGGATCACCTGGCGTACAAGTAATCTACCCGTCCTCAT
CGCAAGTTCAGGTCATTGGCGGAAGACATTTCTTACGCAACGGATTGCGA
AGGAATCTCACGATCAATGCGAACGCAACTAGTCAAAATTTTCAACTTAT
CAGTAGCTTGAGCAACGGAAATTCAGGCAACACTCCTCTTCGGAATTTCT
TAAGGTCCTTGTTTGGCCGCCAGCCAAATATCCAGTATGTAAACCTGAAT
TCCAGAGCCTTTAACGACGTCTCCCAGGAGCCTCTATACTGGAATCCATA
TCGGTCCTTTGCGAGTCCAGTGGTTTTGCCCCGCGCACGAGTTAAGACTG
TAAGACAAGGTGTTCCACGACGGATTTTGGTACGGAATCTGATGTCCACC
AAATCCCAGACCACCAATGTGCAATCCTTTAGGATTCCGATTCTTGAGAA
CGAATGGCAGTATGACCCGACATATGTATAATATTGAGTGAACAATTGGA
TCAGCCTCCCCTGACTTTTCCGGACTAAAATATAAATAAAATGAAATTTT
TGAGATGATGAAAAAAAAAAAAAAAAAAAAAAAAAAA
MIP29949.complete Blast Records
Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:53:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2R | 21145070 | chr2R | 16678274..16678833 | 560..1 | 2755 | 99.5 | Minus |
chr2R | 21145070 | chr2R | 16678131..16678220 | 660..559 | 280 | 87.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:53:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20791617..20792176 | 560..1 | 2800 | 100 | Minus |
2R | 25286936 | 2R | 20791460..20791563 | 662..559 | 520 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:09:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25260384 | 2R | 20792816..20793375 | 560..1 | 2800 | 100 | Minus |
2R | 25260384 | 2R | 20792659..20792762 | 662..559 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 22:53:19 has no hits.
MIP29949.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:54:07 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2R | 16678274..16678833 | 1..560 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:17 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15226-RA | 1..524 | 39..563 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:01 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43668-RA | 1..543 | 39..581 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:32:16 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43668-RA | 1..543 | 39..581 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:17 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15226-RA | 1..524 | 39..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:01 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43668-RA | 17..676 | 1..660 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:16 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43668-RA | 17..676 | 1..660 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:07 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20791462..20791561 | 561..660 | 100 | <- | Minus |
2R | 20791617..20792176 | 1..560 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:07 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20791462..20791561 | 561..660 | 100 | <- | Minus |
2R | 20791617..20792176 | 1..560 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:54:07 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20791462..20791561 | 561..660 | 100 | <- | Minus |
2R | 20791617..20792176 | 1..560 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:01 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16678967..16679066 | 561..660 | 100 | <- | Minus |
arm_2R | 16679122..16679681 | 1..560 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:03:49 Download gff for
MIP29949.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20792816..20793375 | 1..560 | 100 | | Minus |
2R | 20792661..20792760 | 561..660 | 100 | <- | Minus |
MIP29949.hyp Sequence
Translation from 38 to 580
> MIP29949.hyp
MLATLIGLALLLQANTIAGQDYQVFGSPGVQVIYPSSSQVQVIGGRHFLR
NGLRRNLTINANATSQNFQLISSLSNGNSGNTPLRNFLRSLFGRQPNIQY
VNLNSRAFNDVSQEPLYWNPYRSFASPVVLPRARVKTVRQGVPRRILVRN
LMSTKSQTTNVQSFRIPILENEWQYDPTYV*
MIP29949.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43668-PA | 180 | CG43668-PA | 1..180 | 1..180 | 920 | 100 | Plus |
MIP29949.pep Sequence
Translation from 38 to 580
> MIP29949.pep
MLATLIGLALLLQANTIAGQDYQVFGSPGVQVIYPSSSQVQVIGGRHFLR
NGLRRNLTINANATSQNFQLISSLSNGNSGNTPLRNFLRSLFGRQPNIQY
VNLNSRAFNDVSQEPLYWNPYRSFASPVVLPRARVKTVRQGVPRRILVRN
LMSTKSQTTNVQSFRIPILENEWQYDPTYV*
MIP29949.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43668-PA | 180 | CG43668-PA | 1..180 | 1..180 | 920 | 100 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL17424-PA | 353 | GL17424-PA | 1..190 | 1..173 | 230 | 37.1 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM15775-PA | 182 | GM15775-PA | 1..180 | 1..180 | 879 | 95 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:36:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD25251-PA | 328 | GD25251-PA | 1..174 | 1..174 | 838 | 93.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE13770-PA | 230 | GE13770-PA | 1..173 | 1..172 | 780 | 86.7 | Plus |