Clone MIP29956 Report

Search the DGRC for MIP29956

Clone and Library Details

Library:MIP
Tissue Source:Pooled D melanogaster cDNA libraries
Created by:
Date Registered:2008-10-08
Comments:
Original Plate Number:299
Well:56
Vector:pOT2
Associated Gene/TranscriptCG33299-RC
Protein status:MIP29956.pep: gold
Sequenced Size:770

Clone Sequence Records

MIP29956.complete Sequence

770 bp assembled on 2011-04-04

GenBank Submission: BT126204.1

> MIP29956.complete
CAGAGATCCGGCCAGGTAGCCACGGACATAGACAAAATGTGGAGATTCCT
TCTGATTTGTAGTATTCAGCTGATTTGCGCATCAGAGCATAGTGGCGAAG
GATATGGCGATGGTTACGGATACGGCGGAAGCGGAGGCGGCGGCAGTGGA
TCACTAGGCAGCGGCGGAGGAGGCGATGGCCACTTTCACCACCACACACC
CACCACGTACTCGGAGATCTCGAAGCATGTGCCGGTGCATGTGATCGAAA
AGGTGCCACTGCCCATTCCCCATCCGGTCGCCGTTCAGGTGCCCAACGTA
ATTCGGCTTCAAATTCCGGAACCCTATGCCGTCCACGTGCCCGTCCAGCA
GGAGATCCATGTGCCGGTGTATAAAATAGTGCCCGAAATAACCGAAAAGA
AGATACCCTACACCGTCGAGAAGCCATACCCCGTCGAGGTGGAGAAACCT
TATCCCGTCGAGGTGATTAAGCAGATCAAGATCCCGGTGCCTAAGCCCTA
TCCTGTTCCGTTTACCATCTACAAACACGTCCTGCAAAAGGAGCACGGCT
GGTGATGAAGATAGTCGTGGTTGGTTAGGTGTGTAAGTTTTGGAATGCCA
GCTCTAAATCGAAGAGTATTATTTTACAAAGCTAATGAGTAAAAATAGTG
TTTAAGATAAAGTACTGCGTTTTCAGAAAATACTGAAAAGAAAAGACGTT
ACTGAACCTAATTGAAGTCTATAAACAAACGAAAAAATACAATTTTCTTC
CATAAAAAAAAAAAAAAAAA

MIP29956.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-16 22:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9655521..9656225 49..753 3525 100 Plus
chr2L 23010047 chr2L 9655410..9655457 1..48 240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9656720..9657425 49..754 3530 100 Plus
2L 23513712 2L 9656609..9656656 1..48 240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 23:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9656720..9657425 49..754 3530 100 Plus
2L 23513712 2L 9656609..9656656 1..48 240 100 Plus
Blast to na_te.dros performed 2019-03-16 22:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 1305..1417 643..753 136 61.4 Plus

MIP29956.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 22:55:50 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9655410..9655457 1..48 100 -> Plus
chr2L 9655521..9656225 49..753 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-04-04 11:17:29 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 1..519 37..555 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:00:48 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 1..519 37..555 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:33:06 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 1..519 37..555 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-04-04 11:17:29 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 10..685 1..676 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:00:48 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 10..762 1..753 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:33:06 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
CG33299-RC 10..762 1..753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:50 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9656609..9656656 1..48 100 -> Plus
2L 9656720..9657424 49..753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:50 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9656609..9656656 1..48 100 -> Plus
2L 9656720..9657424 49..753 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 22:55:50 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9656609..9656656 1..48 100 -> Plus
2L 9656720..9657424 49..753 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:00:48 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9656609..9656656 1..48 100 -> Plus
arm_2L 9656720..9657424 49..753 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 20:04:17 Download gff for MIP29956.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9656720..9657424 49..753 100   Plus
2L 9656609..9656656 1..48 100 -> Plus

MIP29956.hyp Sequence

Translation from 0 to 554

> MIP29956.hyp
QRSGQVATDIDKMWRFLLICSIQLICASEHSGEGYGDGYGYGGSGGGGSG
SLGSGGGGDGHFHHHTPTTYSEISKHVPVHVIEKVPLPIPHPVAVQVPNV
IRLQIPEPYAVHVPVQQEIHVPVYKIVPEITEKKIPYTVEKPYPVEVEKP
YPVEVIKQIKIPVPKPYPVPFTIYKHVLQKEHGW*

MIP29956.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:17:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33299-PC 172 CG33299-PC 1..172 13..184 950 100 Plus
CG33299-PB 193 CG33299-PB 26..193 17..184 923 100 Plus
CG7031-PC 474 CG7031-PC 317..473 27..184 252 34.4 Plus
CG7031-PB 475 CG7031-PB 318..474 27..184 252 34.4 Plus
CG7031-PA 475 CG7031-PA 318..474 27..184 252 34.4 Plus

MIP29956.pep Sequence

Translation from 0 to 554

> MIP29956.pep
QRSGQVATDIDKMWRFLLICSIQLICASEHSGEGYGDGYGYGGSGGGGSG
SLGSGGGGDGHFHHHTPTTYSEISKHVPVHVIEKVPLPIPHPVAVQVPNV
IRLQIPEPYAVHVPVQQEIHVPVYKIVPEITEKKIPYTVEKPYPVEVEKP
YPVEVIKQIKIPVPKPYPVPFTIYKHVLQKEHGW*

MIP29956.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 18:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22786-PA 167 GF22786-PA 1..167 13..184 616 84.9 Plus
Dana\GF16714-PA 461 GF16714-PA 333..460 54..184 177 35.1 Plus
Dana\GF15610-PA 281 GF15610-PA 39..194 29..180 156 38 Plus
Dana\GF13116-PA 330 GF13116-PA 1..167 13..169 144 33 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 18:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10046-PA 193 GG10046-PA 26..193 17..184 806 96.4 Plus
Dere\GG11168-PA 466 GG11168-PA 338..465 54..184 176 35.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 18:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10679-PA 163 GH10679-PA 36..163 59..184 482 89.8 Plus
Dgri\GH22327-PA 450 GH22327-PA 337..449 72..184 171 35.4 Plus
Dgri\GH23916-PA 455 GH23916-PA 342..454 72..184 170 35.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33299-PC 172 CG33299-PC 1..172 13..184 950 100 Plus
CG33299-PB 193 CG33299-PB 26..193 17..184 923 100 Plus
CG7031-PC 474 CG7031-PC 317..473 27..184 252 34.4 Plus
CG7031-PB 475 CG7031-PB 318..474 27..184 252 34.4 Plus
CG7031-PA 475 CG7031-PA 318..474 27..184 252 34.4 Plus
CG16885-PA 270 CG16885-PA 39..189 29..180 211 35.8 Plus
CG16884-PA 277 CG16884-PA 59..234 31..169 188 32.8 Plus
CG30101-PA 328 CG30101-PA 42..165 60..169 187 36.4 Plus
CG30101-PA 328 CG30101-PA 112..239 65..169 184 38.9 Plus
CG13840-PC 466 CG13840-PC 320..448 64..181 184 34.1 Plus
CG30101-PA 328 CG30101-PA 164..320 72..184 182 32.5 Plus
CG16886-PB 358 CG16886-PB 135..295 64..177 171 33.5 Plus
CG16886-PA 373 CG16886-PA 135..295 64..177 171 33.5 Plus
CG13138-PC 549 CG13138-PC 172..270 61..173 165 35.4 Plus
CG13138-PB 549 CG13138-PB 172..270 61..173 165 35.4 Plus
CG16886-PB 358 CG16886-PB 194..327 64..181 152 36.8 Plus
CG16886-PA 373 CG16886-PA 194..327 64..181 152 36.8 Plus
CG16886-PB 358 CG16886-PB 72..233 61..177 147 32.1 Plus
CG16886-PA 373 CG16886-PA 72..233 61..177 147 32.1 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 18:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11117-PA 158 GI11117-PA 1..158 22..184 491 77.3 Plus
Dmoj\GI21995-PA 450 GI21995-PA 337..449 72..184 162 35.4 Plus
Dmoj\GI21035-PA 328 GI21035-PA 1..167 13..169 142 31.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 18:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18926-PA 169 GL18926-PA 1..169 13..184 595 79 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 18:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25861-PA 165 GA25861-PA 1..165 24..184 588 82.4 Plus
Dpse\GA20045-PA 375 GA20045-PA 243..374 48..184 158 32.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 18:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19551-PA 239 GM19551-PA 35..239 1..184 892 88.8 Plus
Dsec\GM26469-PA 474 GM26469-PA 346..473 54..184 175 34.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 18:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23621-PA 93 GD23621-PA 5..93 96..184 421 98.9 Plus
Dsim\GD20985-PA 471 GD20985-PA 343..470 54..184 178 35.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 18:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18318-PA 163 GJ18318-PA 1..163 13..184 509 76.2 Plus
Dvir\GJ14349-PA 465 GJ14349-PA 352..464 72..184 161 34.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 18:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14655-PA 168 GK14655-PA 1..168 13..184 609 80.2 Plus
Dwil\GK11477-PA 456 GK11477-PA 343..455 72..184 159 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 18:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18860-PA 174 GE18860-PA 1..174 13..184 828 97.1 Plus
Dyak\GE10334-PA 493 GE10334-PA 380..492 72..184 158 35.4 Plus
Dyak\GE25278-PA 270 GE25278-PA 39..189 29..180 145 37 Plus